Ggra8444.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8444.t1
Unique NameGgra8444.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length359
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:733693..734769 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4533.OB05G19770.1
Max annot lvl35493|Streptophyta
Evalue3.52e-41
EggNOG OGs28K8E@1|root,2QSP4@2759|Eukaryota,37SP7@33090|Viridiplantae,3GA9I@35493|Streptophyta,3KQDA@4447|Liliopsida,3I8KM@38820|Poales
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8444Ggra8444Gracilaria gracilis GNS1m malegenetig00000041_pilon 733693..734769 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8444.t1.stop1Ggra8444.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 733693..733695 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8444.t1.CDS1Ggra8444.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 733693..734769 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8444.t1.exon1Ggra8444.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 733693..734769 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8444.t1.start1Ggra8444.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 734767..734769 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8444.t1Ggra8444.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 733693..734769 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8444.t1 ID=Ggra8444.t1|Name=Ggra8444.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=359bp
MLAAIPSALVVCDAPEQQPPASSMMPRTALDSFRRRRSAEVSQQPAAQHS
SERVRAVTSRGALAQYYNTFPDPVVSDAFLTALKPLTELSNGVVASLSDA
QGEGARQIRTTAIPSGLDSGMYCIRCAFEEASQNLRSIPTLQPLAPRVQA
IATRFETFQFKQSEHISSVIASFLPNDFRGSIFSAYKQRSERVNRQAVEQ
LLNDGGTIREKYDLLWQQQWKRRESLAMIGNATGVWRWLVRLLAGVPDNL
LVFAREINAPNGLTEPLRAKFSPALHDLANCAIEIDALSAALLSVEDEHV
VRDAKAVLEKCVAQYEAELETFVQLLQTVIVNSPFFVEPDEVEGIMNNAE
VDDATGRT*
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spliced messenger RNA

>Ggra8444.t1 ID=Ggra8444.t1|Name=Ggra8444.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00000041_pilon:733693..734769- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGCTGCCATCCCTTCCGCACTCGTCGTTTGCGACGCGCCGGAGCA
GCAGCCGCCTGCCTCTTCCATGATGCCGCGCACCGCGCTTGATTCGTTCC
GACGACGGAGGAGTGCTGAGGTTTCGCAACAACCTGCTGCGCAGCATTCC
TCTGAGCGAGTGCGCGCCGTCACTTCTAGAGGCGCTTTGGCTCAGTATTA
CAATACGTTCCCCGATCCAGTTGTTTCGGACGCGTTTTTGACCGCTTTGA
AACCGCTCACAGAGTTGAGTAACGGCGTCGTCGCTTCCCTTTCAGACGCC
CAAGGAGAGGGTGCGCGCCAAATTCGCACCACTGCCATTCCGAGCGGATT
GGATAGTGGCATGTATTGTATTCGATGCGCATTTGAAGAAGCTTCACAGA
ATCTGCGATCCATCCCGACGCTACAACCGCTCGCACCGAGGGTGCAAGCC
ATCGCAACTCGCTTCGAGACATTCCAATTCAAGCAGAGCGAACACATCTC
CAGCGTGATCGCCAGCTTTCTACCAAACGACTTTCGCGGCTCGATATTTT
CTGCGTACAAGCAGAGAAGCGAGCGCGTGAACCGACAAGCCGTTGAGCAA
CTGCTCAACGACGGCGGCACAATTCGTGAAAAGTACGATCTCTTATGGCA
GCAGCAGTGGAAACGACGCGAGTCTCTGGCCATGATTGGCAACGCAACGG
GCGTTTGGCGCTGGCTTGTGCGCTTGTTGGCGGGCGTTCCGGACAATTTG
TTGGTGTTTGCAAGGGAGATTAACGCGCCTAACGGACTCACTGAGCCGTT
GAGAGCCAAGTTTTCTCCCGCTTTGCATGACCTTGCAAACTGTGCGATTG
AGATTGATGCGCTGTCGGCGGCGCTTTTGAGCGTTGAGGATGAACACGTT
GTGCGCGATGCGAAGGCAGTTTTGGAGAAGTGCGTCGCACAGTATGAAGC
TGAACTGGAGACATTTGTTCAGCTTCTGCAGACGGTCATTGTCAACTCGC
CGTTCTTCGTGGAGCCTGATGAGGTTGAGGGGATCATGAACAACGCTGAG
GTGGATGATGCAACTGGGCGGACGTAG
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protein sequence of Ggra8444.t1

>Ggra8444.t1 ID=Ggra8444.t1|Name=Ggra8444.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=359bp
MLAAIPSALVVCDAPEQQPPASSMMPRTALDSFRRRRSAEVSQQPAAQHS
SERVRAVTSRGALAQYYNTFPDPVVSDAFLTALKPLTELSNGVVASLSDA
QGEGARQIRTTAIPSGLDSGMYCIRCAFEEASQNLRSIPTLQPLAPRVQA
IATRFETFQFKQSEHISSVIASFLPNDFRGSIFSAYKQRSERVNRQAVEQ
LLNDGGTIREKYDLLWQQQWKRRESLAMIGNATGVWRWLVRLLAGVPDNL
LVFAREINAPNGLTEPLRAKFSPALHDLANCAIEIDALSAALLSVEDEHV
VRDAKAVLEKCVAQYEAELETFVQLLQTVIVNSPFFVEPDEVEGIMNNAE
VDDATGRT*
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mRNA from alignment at tig00000041_pilon:733693..734769-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8444.t1 ID=Ggra8444.t1|Name=Ggra8444.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00000041_pilon:733693..734769- (Gracilaria gracilis GNS1m male)
ATGCTTGCTGCCATCCCTTCCGCACTCGTCGTTTGCGACGCGCCGGAGCA
GCAGCCGCCTGCCTCTTCCATGATGCCGCGCACCGCGCTTGATTCGTTCC
GACGACGGAGGAGTGCTGAGGTTTCGCAACAACCTGCTGCGCAGCATTCC
TCTGAGCGAGTGCGCGCCGTCACTTCTAGAGGCGCTTTGGCTCAGTATTA
CAATACGTTCCCCGATCCAGTTGTTTCGGACGCGTTTTTGACCGCTTTGA
AACCGCTCACAGAGTTGAGTAACGGCGTCGTCGCTTCCCTTTCAGACGCC
CAAGGAGAGGGTGCGCGCCAAATTCGCACCACTGCCATTCCGAGCGGATT
GGATAGTGGCATGTATTGTATTCGATGCGCATTTGAAGAAGCTTCACAGA
ATCTGCGATCCATCCCGACGCTACAACCGCTCGCACCGAGGGTGCAAGCC
ATCGCAACTCGCTTCGAGACATTCCAATTCAAGCAGAGCGAACACATCTC
CAGCGTGATCGCCAGCTTTCTACCAAACGACTTTCGCGGCTCGATATTTT
CTGCGTACAAGCAGAGAAGCGAGCGCGTGAACCGACAAGCCGTTGAGCAA
CTGCTCAACGACGGCGGCACAATTCGTGAAAAGTACGATCTCTTATGGCA
GCAGCAGTGGAAACGACGCGAGTCTCTGGCCATGATTGGCAACGCAACGG
GCGTTTGGCGCTGGCTTGTGCGCTTGTTGGCGGGCGTTCCGGACAATTTG
TTGGTGTTTGCAAGGGAGATTAACGCGCCTAACGGACTCACTGAGCCGTT
GAGAGCCAAGTTTTCTCCCGCTTTGCATGACCTTGCAAACTGTGCGATTG
AGATTGATGCGCTGTCGGCGGCGCTTTTGAGCGTTGAGGATGAACACGTT
GTGCGCGATGCGAAGGCAGTTTTGGAGAAGTGCGTCGCACAGTATGAAGC
TGAACTGGAGACATTTGTTCAGCTTCTGCAGACGGTCATTGTCAACTCGC
CGTTCTTCGTGGAGCCTGATGAGGTTGAGGGGATCATGAACAACGCTGAG
GTGGATGATGCAACTGGGCGGACGTAG
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Coding sequence (CDS) from alignment at tig00000041_pilon:733693..734769-

>Ggra8444.t1 ID=Ggra8444.t1|Name=Ggra8444.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1077bp|location=Sequence derived from alignment at tig00000041_pilon:733693..734769- (Gracilaria gracilis GNS1m male)
ATGCTTGCTGCCATCCCTTCCGCACTCGTCGTTTGCGACGCGCCGGAGCA
GCAGCCGCCTGCCTCTTCCATGATGCCGCGCACCGCGCTTGATTCGTTCC
GACGACGGAGGAGTGCTGAGGTTTCGCAACAACCTGCTGCGCAGCATTCC
TCTGAGCGAGTGCGCGCCGTCACTTCTAGAGGCGCTTTGGCTCAGTATTA
CAATACGTTCCCCGATCCAGTTGTTTCGGACGCGTTTTTGACCGCTTTGA
AACCGCTCACAGAGTTGAGTAACGGCGTCGTCGCTTCCCTTTCAGACGCC
CAAGGAGAGGGTGCGCGCCAAATTCGCACCACTGCCATTCCGAGCGGATT
GGATAGTGGCATGTATTGTATTCGATGCGCATTTGAAGAAGCTTCACAGA
ATCTGCGATCCATCCCGACGCTACAACCGCTCGCACCGAGGGTGCAAGCC
ATCGCAACTCGCTTCGAGACATTCCAATTCAAGCAGAGCGAACACATCTC
CAGCGTGATCGCCAGCTTTCTACCAAACGACTTTCGCGGCTCGATATTTT
CTGCGTACAAGCAGAGAAGCGAGCGCGTGAACCGACAAGCCGTTGAGCAA
CTGCTCAACGACGGCGGCACAATTCGTGAAAAGTACGATCTCTTATGGCA
GCAGCAGTGGAAACGACGCGAGTCTCTGGCCATGATTGGCAACGCAACGG
GCGTTTGGCGCTGGCTTGTGCGCTTGTTGGCGGGCGTTCCGGACAATTTG
TTGGTGTTTGCAAGGGAGATTAACGCGCCTAACGGACTCACTGAGCCGTT
GAGAGCCAAGTTTTCTCCCGCTTTGCATGACCTTGCAAACTGTGCGATTG
AGATTGATGCGCTGTCGGCGGCGCTTTTGAGCGTTGAGGATGAACACGTT
GTGCGCGATGCGAAGGCAGTTTTGGAGAAGTGCGTCGCACAGTATGAAGC
TGAACTGGAGACATTTGTTCAGCTTCTGCAGACGGTCATTGTCAACTCGC
CGTTCTTCGTGGAGCCTGATGAGGTTGAGGGGATCATGAACAACGCTGAG
GTGGATGATGCAACTGGGCGGACGTAG
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