Ggra8441.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8441.t1
Unique NameGgra8441.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length372
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:722628..723802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog242159.ABO96940
Preferred nameVAT1L
PFAMsADH_N,ADH_zinc_N,ADH_zinc_N_2
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00014,RC00029,RC00039,RC00052,RC00076,RC00117,RC00120,RC00831,RC01095,RC02727,RC02728,RC02729,RC02857,RC02888
KEGG koko:K00665
KEGG ReactionR01404,R01624,R01626,R01706,R04355,R04428,R04430,R04533,R04534,R04535,R04536,R04537,R04543,R04544,R04566,R04568,R04725,R04726,R04952,R04953,R04954,R04956,R04957,R04959,R04960,R04962,R04963,R04965,R04967,R04968,R04970,R08159
KEGG Pathwayko00061,ko01100,ko01212,ko04152,ko04910,map00061,map01100,map01212,map04152,map04910
KEGG ModuleM00082,M00083
Evalue1.28e-78
EggNOG OGsCOG0604@1|root,KOG1198@2759|Eukaryota
EC2.3.1.85
Descriptionoxidoreductase activity
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8441Ggra8441Gracilaria gracilis GNS1m malegenetig00000041_pilon 722628..723802 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8441.t1Ggra8441.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 722628..723802 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8441.t1.start1Ggra8441.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 722628..722630 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8441.t1.CDS1Ggra8441.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 722628..722723 +
Ggra8441.t1.CDS2Ggra8441.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000041_pilon 722783..723802 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8441.t1.exon1Ggra8441.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 722628..722723 +
Ggra8441.t1.exon2Ggra8441.t1.exon2Gracilaria gracilis GNS1m maleexontig00000041_pilon 722783..723802 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8441.t1.intron1Ggra8441.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000041_pilon 722724..722782 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8441.t1.stop1Ggra8441.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 723800..723802 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8441.t1 ID=Ggra8441.t1|Name=Ggra8441.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=372bp
MSTSDTQSKRWVTRSYGDIDNLKLEPFAPAEPTGNEVRIRVKAIGMNFAD
VIAVLGFYAAAGDPPFCPGFEISGVVESVGEHVTKFAPDDRVYALVRFGA
YTTTVNVDYRRVRSLPSAWSFEEGAAFGAQVFTAWYALCVLGGIPSSGER
PLLTTSDRKVVLVHSAAGGVGLNLVKMVQKVGGELVAVVGSERKVLSLQD
HGVDREHIIVRGQDDRDGFEQTVRKILGGDGVDVVVDSFLGDYFNDGYKL
LNRGGRYILMGSASIVPSGTMSVLKGGLKNLIEVGWKFLRRPKLDLLSSI
DEGKTVSSFNLVYFFDDYDLLERGFSEIEAMQLARPTVGKTYRFEETPDA
IRYFQSGRNVGKIVLTVGDEN*
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spliced messenger RNA

>Ggra8441.t1 ID=Ggra8441.t1|Name=Ggra8441.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1116bp|location=Sequence derived from alignment at tig00000041_pilon:722628..723802+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGACGTCGGACACCCAATCGAAGCGCTGGGTTACGCGTTCCTATGG
TGATATTGACAACCTCAAGCTCGAACCGTTTGCTCCAGCCGAACCGACTG
GAAATGAAGTCCGCATCCGTGTCAAGGCCATCGGAATGAACTTTGCAGAT
GTGATCGCCGTGCTTGGCTTCTACGCGGCAGCTGGAGACCCTCCTTTCTG
CCCTGGATTTGAAATCAGTGGTGTGGTAGAGTCCGTTGGTGAACACGTCA
CCAAGTTTGCGCCGGATGATCGTGTGTACGCGCTCGTTAGATTTGGTGCC
TACACAACGACGGTGAACGTTGATTATAGACGAGTCAGATCTTTACCCAG
TGCGTGGAGCTTTGAGGAGGGAGCTGCGTTCGGCGCTCAGGTCTTTACTG
CCTGGTATGCTCTATGTGTGTTGGGAGGTATTCCTAGCAGTGGAGAACGG
CCATTGTTGACAACTAGCGATCGAAAGGTTGTCCTTGTGCATTCCGCTGC
AGGAGGAGTGGGGTTAAACTTGGTTAAAATGGTTCAAAAAGTGGGCGGTG
AACTTGTTGCAGTTGTAGGTTCAGAGAGGAAGGTTCTGTCTCTTCAGGAT
CATGGAGTTGATCGAGAACACATTATTGTGAGAGGACAAGATGATCGAGA
TGGATTTGAACAAACAGTACGGAAGATACTTGGTGGTGATGGAGTGGATG
TCGTAGTCGACTCCTTTCTCGGAGATTACTTTAACGATGGGTACAAGCTC
TTGAATCGGGGTGGACGATATATATTGATGGGGTCTGCAAGCATAGTGCC
TTCTGGAACGATGAGTGTCTTAAAGGGTGGATTGAAGAATCTCATCGAAG
TTGGGTGGAAGTTCCTCAGGCGGCCAAAGTTGGATCTTCTTTCGAGCATC
GATGAAGGAAAGACCGTATCCAGCTTCAACTTGGTGTACTTTTTCGATGA
TTACGATCTTCTAGAAAGGGGTTTCAGTGAGATAGAAGCAATGCAGTTAG
CGAGACCAACCGTGGGAAAAACGTATCGGTTTGAAGAGACTCCAGATGCG
ATTCGATATTTCCAGAGTGGTCGAAACGTAGGAAAAATAGTTCTCACGGT
GGGAGATGAAAACTGA
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protein sequence of Ggra8441.t1

>Ggra8441.t1 ID=Ggra8441.t1|Name=Ggra8441.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=372bp
MSTSDTQSKRWVTRSYGDIDNLKLEPFAPAEPTGNEVRIRVKAIGMNFAD
VIAVLGFYAAAGDPPFCPGFEISGVVESVGEHVTKFAPDDRVYALVRFGA
YTTTVNVDYRRVRSLPSAWSFEEGAAFGAQVFTAWYALCVLGGIPSSGER
PLLTTSDRKVVLVHSAAGGVGLNLVKMVQKVGGELVAVVGSERKVLSLQD
HGVDREHIIVRGQDDRDGFEQTVRKILGGDGVDVVVDSFLGDYFNDGYKL
LNRGGRYILMGSASIVPSGTMSVLKGGLKNLIEVGWKFLRRPKLDLLSSI
DEGKTVSSFNLVYFFDDYDLLERGFSEIEAMQLARPTVGKTYRFEETPDA
IRYFQSGRNVGKIVLTVGDEN*
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mRNA from alignment at tig00000041_pilon:722628..723802+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8441.t1 ID=Ggra8441.t1|Name=Ggra8441.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1175bp|location=Sequence derived from alignment at tig00000041_pilon:722628..723802+ (Gracilaria gracilis GNS1m male)
ATGTCGACGTCGGACACCCAATCGAAGCGCTGGGTTACGCGTTCCTATGG
TGATATTGACAACCTCAAGCTCGAACCGTTTGCTCCAGCCGAACCGGTAA
GTCGCGCCCAACAAACGCCTCAACATCCCGAACGCTAATCTCACATCACT
TAAAGACTGGAAATGAAGTCCGCATCCGTGTCAAGGCCATCGGAATGAAC
TTTGCAGATGTGATCGCCGTGCTTGGCTTCTACGCGGCAGCTGGAGACCC
TCCTTTCTGCCCTGGATTTGAAATCAGTGGTGTGGTAGAGTCCGTTGGTG
AACACGTCACCAAGTTTGCGCCGGATGATCGTGTGTACGCGCTCGTTAGA
TTTGGTGCCTACACAACGACGGTGAACGTTGATTATAGACGAGTCAGATC
TTTACCCAGTGCGTGGAGCTTTGAGGAGGGAGCTGCGTTCGGCGCTCAGG
TCTTTACTGCCTGGTATGCTCTATGTGTGTTGGGAGGTATTCCTAGCAGT
GGAGAACGGCCATTGTTGACAACTAGCGATCGAAAGGTTGTCCTTGTGCA
TTCCGCTGCAGGAGGAGTGGGGTTAAACTTGGTTAAAATGGTTCAAAAAG
TGGGCGGTGAACTTGTTGCAGTTGTAGGTTCAGAGAGGAAGGTTCTGTCT
CTTCAGGATCATGGAGTTGATCGAGAACACATTATTGTGAGAGGACAAGA
TGATCGAGATGGATTTGAACAAACAGTACGGAAGATACTTGGTGGTGATG
GAGTGGATGTCGTAGTCGACTCCTTTCTCGGAGATTACTTTAACGATGGG
TACAAGCTCTTGAATCGGGGTGGACGATATATATTGATGGGGTCTGCAAG
CATAGTGCCTTCTGGAACGATGAGTGTCTTAAAGGGTGGATTGAAGAATC
TCATCGAAGTTGGGTGGAAGTTCCTCAGGCGGCCAAAGTTGGATCTTCTT
TCGAGCATCGATGAAGGAAAGACCGTATCCAGCTTCAACTTGGTGTACTT
TTTCGATGATTACGATCTTCTAGAAAGGGGTTTCAGTGAGATAGAAGCAA
TGCAGTTAGCGAGACCAACCGTGGGAAAAACGTATCGGTTTGAAGAGACT
CCAGATGCGATTCGATATTTCCAGAGTGGTCGAAACGTAGGAAAAATAGT
TCTCACGGTGGGAGATGAAAACTGA
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Coding sequence (CDS) from alignment at tig00000041_pilon:722628..723802+

>Ggra8441.t1 ID=Ggra8441.t1|Name=Ggra8441.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1116bp|location=Sequence derived from alignment at tig00000041_pilon:722628..723802+ (Gracilaria gracilis GNS1m male)
ATGTCGACGTCGGACACCCAATCGAAGCGCTGGGTTACGCGTTCCTATGG
TGATATTGACAACCTCAAGCTCGAACCGTTTGCTCCAGCCGAACCGACTG
GAAATGAAGTCCGCATCCGTGTCAAGGCCATCGGAATGAACTTTGCAGAT
GTGATCGCCGTGCTTGGCTTCTACGCGGCAGCTGGAGACCCTCCTTTCTG
CCCTGGATTTGAAATCAGTGGTGTGGTAGAGTCCGTTGGTGAACACGTCA
CCAAGTTTGCGCCGGATGATCGTGTGTACGCGCTCGTTAGATTTGGTGCC
TACACAACGACGGTGAACGTTGATTATAGACGAGTCAGATCTTTACCCAG
TGCGTGGAGCTTTGAGGAGGGAGCTGCGTTCGGCGCTCAGGTCTTTACTG
CCTGGTATGCTCTATGTGTGTTGGGAGGTATTCCTAGCAGTGGAGAACGG
CCATTGTTGACAACTAGCGATCGAAAGGTTGTCCTTGTGCATTCCGCTGC
AGGAGGAGTGGGGTTAAACTTGGTTAAAATGGTTCAAAAAGTGGGCGGTG
AACTTGTTGCAGTTGTAGGTTCAGAGAGGAAGGTTCTGTCTCTTCAGGAT
CATGGAGTTGATCGAGAACACATTATTGTGAGAGGACAAGATGATCGAGA
TGGATTTGAACAAACAGTACGGAAGATACTTGGTGGTGATGGAGTGGATG
TCGTAGTCGACTCCTTTCTCGGAGATTACTTTAACGATGGGTACAAGCTC
TTGAATCGGGGTGGACGATATATATTGATGGGGTCTGCAAGCATAGTGCC
TTCTGGAACGATGAGTGTCTTAAAGGGTGGATTGAAGAATCTCATCGAAG
TTGGGTGGAAGTTCCTCAGGCGGCCAAAGTTGGATCTTCTTTCGAGCATC
GATGAAGGAAAGACCGTATCCAGCTTCAACTTGGTGTACTTTTTCGATGA
TTACGATCTTCTAGAAAGGGGTTTCAGTGAGATAGAAGCAATGCAGTTAG
CGAGACCAACCGTGGGAAAAACGTATCGGTTTGAAGAGACTCCAGATGCG
ATTCGATATTTCCAGAGTGGTCGAAACGTAGGAAAAATAGTTCTCACGGT
GGGAGATGAAAACTGA
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