Ggra8440.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8440.t1
Unique Name	Ggra8440.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	832

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000041_pilon	contig	tig00000041_pilon:717536..720031 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	80637.XP_007765569.1
Max annot lvl	4751\|Fungi
Evalue	4.91e-56
EggNOG OGs	2F7A6@1\|root,2T8DC@2759\|Eukaryota,3AHF5@33154\|Opisthokonta,3PA5N@4751\|Fungi

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8440	Ggra8440	Gracilaria gracilis GNS1m male	gene	tig00000041_pilon 717536..720031 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8440.t1.stop1	Ggra8440.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000041_pilon 717536..717538 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8440.t1.CDS1	Ggra8440.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000041_pilon 717536..720031 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8440.t1.exon1	Ggra8440.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000041_pilon 717536..720031 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8440.t1.start1	Ggra8440.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000041_pilon 720029..720031 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8440.t1	Ggra8440.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000041_pilon 717536..720031 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000041_pilon:717536..720031-
coding sequence from alignment at tig00000041_pilon:717536..720031-

mRNA sequence

>Ggra8440.t1 ID=Ggra8440.t1|Name=Ggra8440.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=832bp
MFSTDSEETHSTHSFSDGLEESAFDLLLVGGGPRSIIQVTSEIIFMLLYR
QHFEDLISLGAHYDINTLIVEKQRFVGVGGAYNAGQTGMMNSGVEADITF
PISLPDSSKNMEYVKDFLSYKKRYDRFIGKGAESYYQLLKKFNLPGAVMF
NRSVGPASNTPNGELAHQGAYLMRRTVGEEEVANFHKVKMLANVLLPFYK
LHIMESTALRHLMVHKNGQQIASVQTEGEGFFEYITADQVRLNTGTVSRN
PVSDPAVRKLMFCQPMNVHHFKQFCAVHDLLDSDGMLQAEKKMLSGGMGL
SGLDEISMLDGVMKLFEVDSNSVLGYKVSEEAKQKYQGAITIISRSQGRA
CYPRHSHTAEWQQGSPVMGNSKQVHALFLHNFGEELYQVWTDIITASVAR
ARNSTPDEVSYQRVSTKNLLSSQFEGTKWFLEHRKRAGEEEIAGNLSKKM
ELLKESTKTLYGAWRQAALCLIFGFGLEEDLGEATEAMSDYAPLTWKGRE
VWLFHRTQIASLTDERFAATKSNRSHFQNWVEIMRHVTSSPVEIHSMFHL
LLESGIAHHEVGNYTDVVASEDGAKVALHGVEYDSFLVSPVFDHESDGVA
KSLANHLKTIDKNHGVFGKVGKFRRYLDNDGNVLPIADNGLGGKGFDEHN
KLVDSHEGSFAVDVNNRESGTSVASSFTLRRMAMAHLKAAGVADPEKVVD
EIYESGKPNLDDYNAEVEKFREHFEDAFETWAYLQAIKLLAGDDAKMYTS
LYDEGITKNSRQAQIAKMSESSDLLMKRAVELYHEELKNMPTYNPPSRDE
YLGRFVDTTEEEDTHIYTNAMKIAKEHLTRK*

spliced messenger RNA

>Ggra8440.t1 ID=Ggra8440.t1|Name=Ggra8440.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2496bp|location=Sequence derived from alignment at tig00000041_pilon:717536..720031- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTAGCACAGACTCAGAGGAGACTCATTCCACACATTCCTTTTCAGA
TGGCCTCGAAGAGAGTGCTTTCGATCTTCTTCTCGTGGGTGGGGGCCCCA
GAAGTATCATTCAGGTTACTTCTGAAATCATTTTCATGCTCCTCTACCGC
CAACATTTTGAGGATCTCATCAGTCTCGGAGCGCATTATGATATCAATAC
CCTCATCGTAGAGAAGCAGCGCTTCGTCGGTGTCGGCGGTGCATACAACG
CCGGGCAGACCGGAATGATGAACAGCGGTGTCGAAGCCGACATTACCTTC
CCAATTTCCCTGCCGGATTCTTCCAAAAACATGGAGTACGTGAAGGACTT
CTTGAGTTACAAGAAGCGATACGACAGGTTTATTGGAAAGGGAGCCGAAT
CATACTACCAATTGCTGAAGAAGTTCAACCTGCCCGGCGCTGTGATGTTT
AATAGATCGGTTGGACCGGCGTCTAACACCCCCAACGGTGAATTGGCTCA
CCAAGGCGCATACCTGATGCGCCGCACCGTGGGTGAAGAAGAAGTGGCGA
ACTTCCACAAGGTCAAAATGTTGGCCAACGTGCTACTTCCGTTTTACAAG
CTCCATATCATGGAATCTACAGCTCTCCGTCATCTCATGGTGCACAAGAA
TGGACAACAAATCGCCTCAGTGCAAACGGAAGGTGAAGGTTTCTTCGAGT
ATATCACTGCAGACCAAGTCCGCCTCAATACCGGCACTGTTTCACGCAAC
CCCGTTTCTGACCCGGCAGTTCGCAAGCTCATGTTTTGTCAGCCCATGAA
TGTTCACCATTTCAAACAGTTTTGTGCAGTCCACGATCTCCTCGACAGCG
ATGGTATGCTTCAAGCCGAGAAGAAGATGTTGAGCGGAGGCATGGGTCTT
TCTGGCCTTGATGAAATCTCTATGTTGGATGGTGTGATGAAGCTGTTTGA
AGTAGATTCGAACAGCGTGCTTGGGTACAAGGTGAGCGAGGAAGCTAAAC
AGAAGTACCAGGGTGCCATCACCATCATAAGTCGATCCCAGGGTAGGGCA
TGTTACCCGAGACACTCGCACACAGCTGAGTGGCAACAGGGGAGTCCGGT
TATGGGCAATTCTAAACAAGTTCATGCGCTGTTCCTCCACAACTTTGGCG
AAGAACTGTACCAGGTGTGGACTGATATCATCACTGCCTCAGTCGCTAGG
GCCAGAAATAGCACACCCGATGAAGTGTCGTACCAGCGCGTGTCGACCAA
GAATCTGTTAAGCTCGCAGTTTGAGGGTACCAAGTGGTTCCTGGAGCACA
GGAAGCGCGCAGGTGAGGAAGAAATTGCCGGCAATCTCTCGAAGAAGATG
GAGCTCTTGAAGGAGTCTACAAAGACCTTGTACGGTGCATGGCGTCAAGC
CGCTTTGTGCCTTATCTTCGGGTTCGGTTTGGAAGAAGACTTGGGGGAAG
CAACCGAAGCCATGTCCGACTACGCTCCCCTCACATGGAAGGGCAGGGAG
GTATGGTTGTTCCATCGCACACAGATTGCTAGTCTGACTGACGAGCGATT
CGCGGCAACCAAGTCCAACCGCTCACACTTCCAAAACTGGGTGGAGATCA
TGCGCCATGTCACATCCTCGCCGGTGGAGATCCACAGCATGTTCCATCTG
CTTCTGGAGTCTGGAATTGCCCACCATGAAGTTGGCAACTACACAGACGT
TGTCGCCAGTGAAGACGGAGCCAAGGTTGCCCTGCATGGTGTGGAATACG
ATTCGTTTTTGGTTTCGCCGGTGTTCGACCACGAATCAGATGGCGTTGCA
AAGTCTCTCGCAAATCATCTCAAGACTATTGACAAGAACCATGGTGTTTT
CGGAAAAGTAGGAAAGTTCCGCAGATACTTGGATAACGACGGCAACGTTC
TGCCCATTGCAGATAATGGACTTGGTGGAAAAGGTTTCGATGAACACAAC
AAACTTGTTGACTCTCATGAGGGCAGTTTTGCAGTCGATGTGAACAACAG
GGAATCTGGAACAAGTGTGGCCTCGTCGTTCACCCTTCGACGAATGGCTA
TGGCTCATCTCAAGGCCGCTGGCGTTGCCGACCCTGAAAAGGTGGTTGAC
GAGATCTACGAAAGCGGAAAGCCAAATCTCGATGACTACAATGCGGAAGT
TGAGAAGTTCAGAGAGCACTTTGAAGACGCGTTCGAGACGTGGGCATATC
TACAAGCCATCAAGCTTTTGGCTGGAGATGACGCGAAGATGTATACGTCT
CTTTACGATGAGGGTATCACAAAGAACTCGAGGCAGGCTCAGATTGCGAA
GATGAGCGAAAGCTCGGACTTGCTGATGAAGAGAGCGGTTGAGTTGTACC
ATGAGGAGCTGAAGAACATGCCCACATATAATCCACCGTCGCGTGACGAA
TATCTTGGTAGATTTGTGGACACGACTGAGGAGGAAGATACACATATCTA
TACGAATGCGATGAAGATTGCCAAGGAACACTTGACGAGGAAGTGA

protein sequence of Ggra8440.t1

>Ggra8440.t1 ID=Ggra8440.t1|Name=Ggra8440.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=832bp
MFSTDSEETHSTHSFSDGLEESAFDLLLVGGGPRSIIQVTSEIIFMLLYR
QHFEDLISLGAHYDINTLIVEKQRFVGVGGAYNAGQTGMMNSGVEADITF
PISLPDSSKNMEYVKDFLSYKKRYDRFIGKGAESYYQLLKKFNLPGAVMF
NRSVGPASNTPNGELAHQGAYLMRRTVGEEEVANFHKVKMLANVLLPFYK
LHIMESTALRHLMVHKNGQQIASVQTEGEGFFEYITADQVRLNTGTVSRN
PVSDPAVRKLMFCQPMNVHHFKQFCAVHDLLDSDGMLQAEKKMLSGGMGL
SGLDEISMLDGVMKLFEVDSNSVLGYKVSEEAKQKYQGAITIISRSQGRA
CYPRHSHTAEWQQGSPVMGNSKQVHALFLHNFGEELYQVWTDIITASVAR
ARNSTPDEVSYQRVSTKNLLSSQFEGTKWFLEHRKRAGEEEIAGNLSKKM
ELLKESTKTLYGAWRQAALCLIFGFGLEEDLGEATEAMSDYAPLTWKGRE
VWLFHRTQIASLTDERFAATKSNRSHFQNWVEIMRHVTSSPVEIHSMFHL
LLESGIAHHEVGNYTDVVASEDGAKVALHGVEYDSFLVSPVFDHESDGVA
KSLANHLKTIDKNHGVFGKVGKFRRYLDNDGNVLPIADNGLGGKGFDEHN
KLVDSHEGSFAVDVNNRESGTSVASSFTLRRMAMAHLKAAGVADPEKVVD
EIYESGKPNLDDYNAEVEKFREHFEDAFETWAYLQAIKLLAGDDAKMYTS
LYDEGITKNSRQAQIAKMSESSDLLMKRAVELYHEELKNMPTYNPPSRDE
YLGRFVDTTEEEDTHIYTNAMKIAKEHLTRK*

mRNA from alignment at tig00000041_pilon:717536..720031-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8440.t1 ID=Ggra8440.t1|Name=Ggra8440.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2496bp|location=Sequence derived from alignment at tig00000041_pilon:717536..720031- (Gracilaria gracilis GNS1m male)
ATGTTTAGCACAGACTCAGAGGAGACTCATTCCACACATTCCTTTTCAGA
TGGCCTCGAAGAGAGTGCTTTCGATCTTCTTCTCGTGGGTGGGGGCCCCA
GAAGTATCATTCAGGTTACTTCTGAAATCATTTTCATGCTCCTCTACCGC
CAACATTTTGAGGATCTCATCAGTCTCGGAGCGCATTATGATATCAATAC
CCTCATCGTAGAGAAGCAGCGCTTCGTCGGTGTCGGCGGTGCATACAACG
CCGGGCAGACCGGAATGATGAACAGCGGTGTCGAAGCCGACATTACCTTC
CCAATTTCCCTGCCGGATTCTTCCAAAAACATGGAGTACGTGAAGGACTT
CTTGAGTTACAAGAAGCGATACGACAGGTTTATTGGAAAGGGAGCCGAAT
CATACTACCAATTGCTGAAGAAGTTCAACCTGCCCGGCGCTGTGATGTTT
AATAGATCGGTTGGACCGGCGTCTAACACCCCCAACGGTGAATTGGCTCA
CCAAGGCGCATACCTGATGCGCCGCACCGTGGGTGAAGAAGAAGTGGCGA
ACTTCCACAAGGTCAAAATGTTGGCCAACGTGCTACTTCCGTTTTACAAG
CTCCATATCATGGAATCTACAGCTCTCCGTCATCTCATGGTGCACAAGAA
TGGACAACAAATCGCCTCAGTGCAAACGGAAGGTGAAGGTTTCTTCGAGT
ATATCACTGCAGACCAAGTCCGCCTCAATACCGGCACTGTTTCACGCAAC
CCCGTTTCTGACCCGGCAGTTCGCAAGCTCATGTTTTGTCAGCCCATGAA
TGTTCACCATTTCAAACAGTTTTGTGCAGTCCACGATCTCCTCGACAGCG
ATGGTATGCTTCAAGCCGAGAAGAAGATGTTGAGCGGAGGCATGGGTCTT
TCTGGCCTTGATGAAATCTCTATGTTGGATGGTGTGATGAAGCTGTTTGA
AGTAGATTCGAACAGCGTGCTTGGGTACAAGGTGAGCGAGGAAGCTAAAC
AGAAGTACCAGGGTGCCATCACCATCATAAGTCGATCCCAGGGTAGGGCA
TGTTACCCGAGACACTCGCACACAGCTGAGTGGCAACAGGGGAGTCCGGT
TATGGGCAATTCTAAACAAGTTCATGCGCTGTTCCTCCACAACTTTGGCG
AAGAACTGTACCAGGTGTGGACTGATATCATCACTGCCTCAGTCGCTAGG
GCCAGAAATAGCACACCCGATGAAGTGTCGTACCAGCGCGTGTCGACCAA
GAATCTGTTAAGCTCGCAGTTTGAGGGTACCAAGTGGTTCCTGGAGCACA
GGAAGCGCGCAGGTGAGGAAGAAATTGCCGGCAATCTCTCGAAGAAGATG
GAGCTCTTGAAGGAGTCTACAAAGACCTTGTACGGTGCATGGCGTCAAGC
CGCTTTGTGCCTTATCTTCGGGTTCGGTTTGGAAGAAGACTTGGGGGAAG
CAACCGAAGCCATGTCCGACTACGCTCCCCTCACATGGAAGGGCAGGGAG
GTATGGTTGTTCCATCGCACACAGATTGCTAGTCTGACTGACGAGCGATT
CGCGGCAACCAAGTCCAACCGCTCACACTTCCAAAACTGGGTGGAGATCA
TGCGCCATGTCACATCCTCGCCGGTGGAGATCCACAGCATGTTCCATCTG
CTTCTGGAGTCTGGAATTGCCCACCATGAAGTTGGCAACTACACAGACGT
TGTCGCCAGTGAAGACGGAGCCAAGGTTGCCCTGCATGGTGTGGAATACG
ATTCGTTTTTGGTTTCGCCGGTGTTCGACCACGAATCAGATGGCGTTGCA
AAGTCTCTCGCAAATCATCTCAAGACTATTGACAAGAACCATGGTGTTTT
CGGAAAAGTAGGAAAGTTCCGCAGATACTTGGATAACGACGGCAACGTTC
TGCCCATTGCAGATAATGGACTTGGTGGAAAAGGTTTCGATGAACACAAC
AAACTTGTTGACTCTCATGAGGGCAGTTTTGCAGTCGATGTGAACAACAG
GGAATCTGGAACAAGTGTGGCCTCGTCGTTCACCCTTCGACGAATGGCTA
TGGCTCATCTCAAGGCCGCTGGCGTTGCCGACCCTGAAAAGGTGGTTGAC
GAGATCTACGAAAGCGGAAAGCCAAATCTCGATGACTACAATGCGGAAGT
TGAGAAGTTCAGAGAGCACTTTGAAGACGCGTTCGAGACGTGGGCATATC
TACAAGCCATCAAGCTTTTGGCTGGAGATGACGCGAAGATGTATACGTCT
CTTTACGATGAGGGTATCACAAAGAACTCGAGGCAGGCTCAGATTGCGAA
GATGAGCGAAAGCTCGGACTTGCTGATGAAGAGAGCGGTTGAGTTGTACC
ATGAGGAGCTGAAGAACATGCCCACATATAATCCACCGTCGCGTGACGAA
TATCTTGGTAGATTTGTGGACACGACTGAGGAGGAAGATACACATATCTA
TACGAATGCGATGAAGATTGCCAAGGAACACTTGACGAGGAAGTGA

Coding sequence (CDS) from alignment at tig00000041_pilon:717536..720031-

>Ggra8440.t1 ID=Ggra8440.t1|Name=Ggra8440.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2496bp|location=Sequence derived from alignment at tig00000041_pilon:717536..720031- (Gracilaria gracilis GNS1m male)
ATGTTTAGCACAGACTCAGAGGAGACTCATTCCACACATTCCTTTTCAGA
TGGCCTCGAAGAGAGTGCTTTCGATCTTCTTCTCGTGGGTGGGGGCCCCA
GAAGTATCATTCAGGTTACTTCTGAAATCATTTTCATGCTCCTCTACCGC
CAACATTTTGAGGATCTCATCAGTCTCGGAGCGCATTATGATATCAATAC
CCTCATCGTAGAGAAGCAGCGCTTCGTCGGTGTCGGCGGTGCATACAACG
CCGGGCAGACCGGAATGATGAACAGCGGTGTCGAAGCCGACATTACCTTC
CCAATTTCCCTGCCGGATTCTTCCAAAAACATGGAGTACGTGAAGGACTT
CTTGAGTTACAAGAAGCGATACGACAGGTTTATTGGAAAGGGAGCCGAAT
CATACTACCAATTGCTGAAGAAGTTCAACCTGCCCGGCGCTGTGATGTTT
AATAGATCGGTTGGACCGGCGTCTAACACCCCCAACGGTGAATTGGCTCA
CCAAGGCGCATACCTGATGCGCCGCACCGTGGGTGAAGAAGAAGTGGCGA
ACTTCCACAAGGTCAAAATGTTGGCCAACGTGCTACTTCCGTTTTACAAG
CTCCATATCATGGAATCTACAGCTCTCCGTCATCTCATGGTGCACAAGAA
TGGACAACAAATCGCCTCAGTGCAAACGGAAGGTGAAGGTTTCTTCGAGT
ATATCACTGCAGACCAAGTCCGCCTCAATACCGGCACTGTTTCACGCAAC
CCCGTTTCTGACCCGGCAGTTCGCAAGCTCATGTTTTGTCAGCCCATGAA
TGTTCACCATTTCAAACAGTTTTGTGCAGTCCACGATCTCCTCGACAGCG
ATGGTATGCTTCAAGCCGAGAAGAAGATGTTGAGCGGAGGCATGGGTCTT
TCTGGCCTTGATGAAATCTCTATGTTGGATGGTGTGATGAAGCTGTTTGA
AGTAGATTCGAACAGCGTGCTTGGGTACAAGGTGAGCGAGGAAGCTAAAC
AGAAGTACCAGGGTGCCATCACCATCATAAGTCGATCCCAGGGTAGGGCA
TGTTACCCGAGACACTCGCACACAGCTGAGTGGCAACAGGGGAGTCCGGT
TATGGGCAATTCTAAACAAGTTCATGCGCTGTTCCTCCACAACTTTGGCG
AAGAACTGTACCAGGTGTGGACTGATATCATCACTGCCTCAGTCGCTAGG
GCCAGAAATAGCACACCCGATGAAGTGTCGTACCAGCGCGTGTCGACCAA
GAATCTGTTAAGCTCGCAGTTTGAGGGTACCAAGTGGTTCCTGGAGCACA
GGAAGCGCGCAGGTGAGGAAGAAATTGCCGGCAATCTCTCGAAGAAGATG
GAGCTCTTGAAGGAGTCTACAAAGACCTTGTACGGTGCATGGCGTCAAGC
CGCTTTGTGCCTTATCTTCGGGTTCGGTTTGGAAGAAGACTTGGGGGAAG
CAACCGAAGCCATGTCCGACTACGCTCCCCTCACATGGAAGGGCAGGGAG
GTATGGTTGTTCCATCGCACACAGATTGCTAGTCTGACTGACGAGCGATT
CGCGGCAACCAAGTCCAACCGCTCACACTTCCAAAACTGGGTGGAGATCA
TGCGCCATGTCACATCCTCGCCGGTGGAGATCCACAGCATGTTCCATCTG
CTTCTGGAGTCTGGAATTGCCCACCATGAAGTTGGCAACTACACAGACGT
TGTCGCCAGTGAAGACGGAGCCAAGGTTGCCCTGCATGGTGTGGAATACG
ATTCGTTTTTGGTTTCGCCGGTGTTCGACCACGAATCAGATGGCGTTGCA
AAGTCTCTCGCAAATCATCTCAAGACTATTGACAAGAACCATGGTGTTTT
CGGAAAAGTAGGAAAGTTCCGCAGATACTTGGATAACGACGGCAACGTTC
TGCCCATTGCAGATAATGGACTTGGTGGAAAAGGTTTCGATGAACACAAC
AAACTTGTTGACTCTCATGAGGGCAGTTTTGCAGTCGATGTGAACAACAG
GGAATCTGGAACAAGTGTGGCCTCGTCGTTCACCCTTCGACGAATGGCTA
TGGCTCATCTCAAGGCCGCTGGCGTTGCCGACCCTGAAAAGGTGGTTGAC
GAGATCTACGAAAGCGGAAAGCCAAATCTCGATGACTACAATGCGGAAGT
TGAGAAGTTCAGAGAGCACTTTGAAGACGCGTTCGAGACGTGGGCATATC
TACAAGCCATCAAGCTTTTGGCTGGAGATGACGCGAAGATGTATACGTCT
CTTTACGATGAGGGTATCACAAAGAACTCGAGGCAGGCTCAGATTGCGAA
GATGAGCGAAAGCTCGGACTTGCTGATGAAGAGAGCGGTTGAGTTGTACC
ATGAGGAGCTGAAGAACATGCCCACATATAATCCACCGTCGCGTGACGAA
TATCTTGGTAGATTTGTGGACACGACTGAGGAGGAAGATACACATATCTA
TACGAATGCGATGAAGATTGCCAAGGAACACTTGACGAGGAAGTGA