Ggra8432.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8432.t1
Unique NameGgra8432.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length526
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:609874..611800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMI230CT
Preferred nameNTH1
PFAMsEndIII_4Fe-2S,HhH-GPD
Max annot lvl2759|Eukaryota
KEGG koko:K10773
KEGG Pathwayko03410,map03410
Evalue5.37e-86
EggNOG OGsCOG0177@1|root,KOG1921@2759|Eukaryota
EC4.2.99.18
Descriptionoxidized pyrimidine nucleobase lesion DNA N-glycosylase activity
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8432Ggra8432Gracilaria gracilis GNS1m malegenetig00000041_pilon 609874..611800 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8432.t1Ggra8432.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 609874..611800 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8432.t1.stop1Ggra8432.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 609874..609876 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8432.t1.CDS1Ggra8432.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 609874..610780 -
Ggra8432.t1.CDS2Ggra8432.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000041_pilon 611130..611800 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8432.t1.exon1Ggra8432.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 609874..610780 -
Ggra8432.t1.exon2Ggra8432.t1.exon2Gracilaria gracilis GNS1m maleexontig00000041_pilon 611130..611800 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8432.t1.intron1Ggra8432.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000041_pilon 610781..611129 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8432.t1.start1Ggra8432.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 611798..611800 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8432.t1 ID=Ggra8432.t1|Name=Ggra8432.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=526bp
MERDRVGAQQQRQQRLPPGARAKPPTAAALRSLPLQQLAPPCVSSAADGS
PTCVMSASAAALLRAPAVSVEALHMLRLADTFASIVSDVCNNAPLCTLPP
CSHPLAFFFCPTRQTSFTMSYYCRRLLQFNHCSKQCVPLALVYLLRIDRR
QKLSVNHYNVHRLVCTALVLAAKFHDDVSYTNAHYATVAGVASTCEMNML
ERQMLTLLDYNLFVSAERYAQIEDPPPPPPPPPPPPSQQRMLQKARLIQQ
RLEHVYPTAPKGFLHHSDAYTLLIAVLLSAQSLDVKVNQVTPHLFERADT
PQKMVQLGEAQVRAIIKQIGLAPQKARNIVRLSQKLCELHDGVVPDSFEQ
LERLDGVGHKTASVVMLQAFHKPAFPVDTHIHRLACRWGCGHPKSVAKTE
NNLKMWFPDPHSWADLHTRLILFGREHCPARKHDMDQCPVCSFAATDEAR
QLNRQFPNKFVPAASHGDPFCVSTVPENVVEPQRHAVEREHPPARGKKRT
RTERGGGEKKATRRSSRLAHNKQTQ*
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spliced messenger RNA

>Ggra8432.t1 ID=Ggra8432.t1|Name=Ggra8432.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1578bp|location=Sequence derived from alignment at tig00000041_pilon:609874..611800- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCGCGATCGCGTGGGCGCGCAGCAGCAGCGGCAGCAGCGCCTGCC
GCCGGGAGCGCGCGCGAAGCCGCCCACGGCAGCGGCGCTGCGGTCGCTGC
CGCTGCAGCAGCTGGCGCCGCCGTGCGTGTCGTCGGCGGCTGACGGCTCG
CCCACGTGCGTCATGTCCGCGTCGGCGGCCGCGCTGCTGCGCGCGCCCGC
CGTCTCGGTGGAGGCGCTGCACATGCTGCGGCTGGCCGATACGTTTGCGA
GCATTGTGAGTGACGTGTGCAACAACGCGCCGCTCTGTACGCTGCCGCCG
TGCTCGCACCCGCTGGCGTTCTTCTTCTGCCCTACCAGGCAGACTAGCTT
CACCATGAGCTACTATTGCCGCCGTCTGCTGCAGTTCAACCACTGTAGCA
AGCAGTGCGTGCCGCTGGCGTTGGTTTACCTGCTGCGCATTGACCGTCGA
CAAAAGCTTTCGGTCAATCACTACAACGTGCACCGCCTCGTGTGTACGGC
GTTGGTGCTGGCTGCCAAGTTTCATGACGACGTCTCGTACACCAACGCTC
ATTACGCCACCGTTGCCGGCGTCGCCTCCACCTGCGAGATGAACATGCTG
GAACGCCAGATGCTCACACTGCTGGACTACAACCTCTTTGTCAGCGCCGA
ACGCTACGCCCAGATCGAAGACCCGCCGCCGCCGCCGCCGCCGCCGCCGC
CGCCGCCGTCGCAGCAGCGCATGCTGCAAAAGGCGCGTCTCATCCAACAG
CGCCTCGAGCACGTGTACCCCACCGCCCCAAAAGGCTTCCTGCACCACTC
CGACGCGTACACGCTGCTCATCGCCGTGCTGCTCTCCGCGCAGTCGCTGG
ACGTGAAGGTGAACCAGGTCACGCCGCATCTGTTCGAGCGCGCCGACACG
CCGCAAAAGATGGTGCAACTGGGCGAGGCGCAGGTGCGTGCCATCATCAA
GCAGATTGGGTTGGCGCCGCAAAAGGCGCGCAACATTGTGCGCCTGTCGC
AAAAGCTGTGCGAGCTGCATGACGGCGTCGTGCCCGACTCGTTCGAGCAG
CTGGAGCGTCTGGACGGCGTCGGACATAAGACGGCGTCCGTGGTCATGCT
GCAGGCGTTTCACAAGCCGGCGTTCCCGGTCGATACCCATATCCATCGCC
TGGCGTGTCGCTGGGGCTGTGGTCATCCAAAGTCGGTCGCCAAGACCGAA
AACAACCTCAAGATGTGGTTCCCCGACCCCCACAGCTGGGCAGACTTGCA
TACGCGCCTCATCCTGTTTGGACGGGAGCACTGCCCGGCCAGAAAGCATG
ACATGGACCAGTGCCCAGTGTGTAGCTTTGCGGCCACGGATGAGGCTCGC
CAGCTTAATCGACAGTTTCCCAACAAGTTTGTGCCCGCTGCAAGCCATGG
CGACCCTTTTTGTGTGAGCACGGTGCCGGAGAACGTTGTTGAGCCACAGC
GCCACGCTGTGGAACGCGAGCATCCTCCAGCTCGCGGTAAGAAACGAACA
CGCACGGAACGGGGCGGTGGGGAGAAGAAGGCCACTCGAAGAAGCAGTCG
GCTTGCACACAACAAACAAACTCAGTAA
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protein sequence of Ggra8432.t1

>Ggra8432.t1 ID=Ggra8432.t1|Name=Ggra8432.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=526bp
MERDRVGAQQQRQQRLPPGARAKPPTAAALRSLPLQQLAPPCVSSAADGS
PTCVMSASAAALLRAPAVSVEALHMLRLADTFASIVSDVCNNAPLCTLPP
CSHPLAFFFCPTRQTSFTMSYYCRRLLQFNHCSKQCVPLALVYLLRIDRR
QKLSVNHYNVHRLVCTALVLAAKFHDDVSYTNAHYATVAGVASTCEMNML
ERQMLTLLDYNLFVSAERYAQIEDPPPPPPPPPPPPSQQRMLQKARLIQQ
RLEHVYPTAPKGFLHHSDAYTLLIAVLLSAQSLDVKVNQVTPHLFERADT
PQKMVQLGEAQVRAIIKQIGLAPQKARNIVRLSQKLCELHDGVVPDSFEQ
LERLDGVGHKTASVVMLQAFHKPAFPVDTHIHRLACRWGCGHPKSVAKTE
NNLKMWFPDPHSWADLHTRLILFGREHCPARKHDMDQCPVCSFAATDEAR
QLNRQFPNKFVPAASHGDPFCVSTVPENVVEPQRHAVEREHPPARGKKRT
RTERGGGEKKATRRSSRLAHNKQTQ*
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mRNA from alignment at tig00000041_pilon:609874..611800-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8432.t1 ID=Ggra8432.t1|Name=Ggra8432.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1927bp|location=Sequence derived from alignment at tig00000041_pilon:609874..611800- (Gracilaria gracilis GNS1m male)
ATGGAGCGCGATCGCGTGGGCGCGCAGCAGCAGCGGCAGCAGCGCCTGCC
GCCGGGAGCGCGCGCGAAGCCGCCCACGGCAGCGGCGCTGCGGTCGCTGC
CGCTGCAGCAGCTGGCGCCGCCGTGCGTGTCGTCGGCGGCTGACGGCTCG
CCCACGTGCGTCATGTCCGCGTCGGCGGCCGCGCTGCTGCGCGCGCCCGC
CGTCTCGGTGGAGGCGCTGCACATGCTGCGGCTGGCCGATACGTTTGCGA
GCATTGTGAGTGACGTGTGCAACAACGCGCCGCTCTGTACGCTGCCGCCG
TGCTCGCACCCGCTGGCGTTCTTCTTCTGCCCTACCAGGCAGACTAGCTT
CACCATGAGCTACTATTGCCGCCGTCTGCTGCAGTTCAACCACTGTAGCA
AGCAGTGCGTGCCGCTGGCGTTGGTTTACCTGCTGCGCATTGACCGTCGA
CAAAAGCTTTCGGTCAATCACTACAACGTGCACCGCCTCGTGTGTACGGC
GTTGGTGCTGGCTGCCAAGTTTCATGACGACGTCTCGTACACCAACGCTC
ATTACGCCACCGTTGCCGGCGTCGCCTCCACCTGCGAGATGAACATGCTG
GAACGCCAGATGCTCACACTGCTGGACTACAACCTCTTTGTCAGCGCCGA
ACGCTACGCCCAGATCGAAGAGTACGTCGTGCAGCTGGCGCTCAGCAACT
GACCTCCGTGTGTTTAACCCCCTCCGCTCAGCTTTGTTTCTGTCTCATTC
ATTCATTCATTCATTCATTCATAACTTGATATATAAAACTGTACTGTTGG
TGGTATATAATTATACAACACAGCGCCCCGCAGCACGCACGCCCTCAGCG
CACACCGCACCGTGCAGTGCTGTGCCTGCGCCGCCGCAGTAGACATGTAC
CGCCGCGCCTTCCTCGCCGCGCCCGCGCTCGTCGCCCCACGCCGCCCCGC
CCCACCGCGCCTCTCGCCGCCGCGCCCACGCGCCGCCATGAGCGACCCGA
GCGCCGCGCCGCCGCCGCAGCCCGCCGCCGCCGCCGCCGCCGCCGCCGCC
GCCGCCGTCGCAGCAGCGCATGCTGCAAAAGGCGCGTCTCATCCAACAGC
GCCTCGAGCACGTGTACCCCACCGCCCCAAAAGGCTTCCTGCACCACTCC
GACGCGTACACGCTGCTCATCGCCGTGCTGCTCTCCGCGCAGTCGCTGGA
CGTGAAGGTGAACCAGGTCACGCCGCATCTGTTCGAGCGCGCCGACACGC
CGCAAAAGATGGTGCAACTGGGCGAGGCGCAGGTGCGTGCCATCATCAAG
CAGATTGGGTTGGCGCCGCAAAAGGCGCGCAACATTGTGCGCCTGTCGCA
AAAGCTGTGCGAGCTGCATGACGGCGTCGTGCCCGACTCGTTCGAGCAGC
TGGAGCGTCTGGACGGCGTCGGACATAAGACGGCGTCCGTGGTCATGCTG
CAGGCGTTTCACAAGCCGGCGTTCCCGGTCGATACCCATATCCATCGCCT
GGCGTGTCGCTGGGGCTGTGGTCATCCAAAGTCGGTCGCCAAGACCGAAA
ACAACCTCAAGATGTGGTTCCCCGACCCCCACAGCTGGGCAGACTTGCAT
ACGCGCCTCATCCTGTTTGGACGGGAGCACTGCCCGGCCAGAAAGCATGA
CATGGACCAGTGCCCAGTGTGTAGCTTTGCGGCCACGGATGAGGCTCGCC
AGCTTAATCGACAGTTTCCCAACAAGTTTGTGCCCGCTGCAAGCCATGGC
GACCCTTTTTGTGTGAGCACGGTGCCGGAGAACGTTGTTGAGCCACAGCG
CCACGCTGTGGAACGCGAGCATCCTCCAGCTCGCGGTAAGAAACGAACAC
GCACGGAACGGGGCGGTGGGGAGAAGAAGGCCACTCGAAGAAGCAGTCGG
CTTGCACACAACAAACAAACTCAGTAA
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Coding sequence (CDS) from alignment at tig00000041_pilon:609874..611800-

>Ggra8432.t1 ID=Ggra8432.t1|Name=Ggra8432.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1578bp|location=Sequence derived from alignment at tig00000041_pilon:609874..611800- (Gracilaria gracilis GNS1m male)
ATGGAGCGCGATCGCGTGGGCGCGCAGCAGCAGCGGCAGCAGCGCCTGCC
GCCGGGAGCGCGCGCGAAGCCGCCCACGGCAGCGGCGCTGCGGTCGCTGC
CGCTGCAGCAGCTGGCGCCGCCGTGCGTGTCGTCGGCGGCTGACGGCTCG
CCCACGTGCGTCATGTCCGCGTCGGCGGCCGCGCTGCTGCGCGCGCCCGC
CGTCTCGGTGGAGGCGCTGCACATGCTGCGGCTGGCCGATACGTTTGCGA
GCATTGTGAGTGACGTGTGCAACAACGCGCCGCTCTGTACGCTGCCGCCG
TGCTCGCACCCGCTGGCGTTCTTCTTCTGCCCTACCAGGCAGACTAGCTT
CACCATGAGCTACTATTGCCGCCGTCTGCTGCAGTTCAACCACTGTAGCA
AGCAGTGCGTGCCGCTGGCGTTGGTTTACCTGCTGCGCATTGACCGTCGA
CAAAAGCTTTCGGTCAATCACTACAACGTGCACCGCCTCGTGTGTACGGC
GTTGGTGCTGGCTGCCAAGTTTCATGACGACGTCTCGTACACCAACGCTC
ATTACGCCACCGTTGCCGGCGTCGCCTCCACCTGCGAGATGAACATGCTG
GAACGCCAGATGCTCACACTGCTGGACTACAACCTCTTTGTCAGCGCCGA
ACGCTACGCCCAGATCGAAGACCCGCCGCCGCCGCCGCCGCCGCCGCCGC
CGCCGCCGTCGCAGCAGCGCATGCTGCAAAAGGCGCGTCTCATCCAACAG
CGCCTCGAGCACGTGTACCCCACCGCCCCAAAAGGCTTCCTGCACCACTC
CGACGCGTACACGCTGCTCATCGCCGTGCTGCTCTCCGCGCAGTCGCTGG
ACGTGAAGGTGAACCAGGTCACGCCGCATCTGTTCGAGCGCGCCGACACG
CCGCAAAAGATGGTGCAACTGGGCGAGGCGCAGGTGCGTGCCATCATCAA
GCAGATTGGGTTGGCGCCGCAAAAGGCGCGCAACATTGTGCGCCTGTCGC
AAAAGCTGTGCGAGCTGCATGACGGCGTCGTGCCCGACTCGTTCGAGCAG
CTGGAGCGTCTGGACGGCGTCGGACATAAGACGGCGTCCGTGGTCATGCT
GCAGGCGTTTCACAAGCCGGCGTTCCCGGTCGATACCCATATCCATCGCC
TGGCGTGTCGCTGGGGCTGTGGTCATCCAAAGTCGGTCGCCAAGACCGAA
AACAACCTCAAGATGTGGTTCCCCGACCCCCACAGCTGGGCAGACTTGCA
TACGCGCCTCATCCTGTTTGGACGGGAGCACTGCCCGGCCAGAAAGCATG
ACATGGACCAGTGCCCAGTGTGTAGCTTTGCGGCCACGGATGAGGCTCGC
CAGCTTAATCGACAGTTTCCCAACAAGTTTGTGCCCGCTGCAAGCCATGG
CGACCCTTTTTGTGTGAGCACGGTGCCGGAGAACGTTGTTGAGCCACAGC
GCCACGCTGTGGAACGCGAGCATCCTCCAGCTCGCGGTAAGAAACGAACA
CGCACGGAACGGGGCGGTGGGGAGAAGAAGGCCACTCGAAGAAGCAGTCG
GCTTGCACACAACAAACAAACTCAGTAA
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