Ggra842.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra842.t1
Unique Name	Ggra842.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	719

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000202_pilon	contig	tig00000202_pilon:48073..50229 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMT459CT
Preferred name	AAE15
PFAMs	AMP-binding
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00004,RC00014
KEGG ko	ko:K01897
KEGG TC	4.C.1.1
KEGG Reaction	R01280
KEGG Pathway	ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920
KEGG Module	M00086
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0008922,GO:0009058,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0009987,GO:0015645,GO:0016053,GO:0016874,GO:0016877,GO:0016878,GO:0019752,GO:0030497,GO:0031967,GO:0031975,GO:0032787,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:1901576
Evalue	6.87e-162
EggNOG OGs	COG1022@1\|root,KOG1256@2759\|Eukaryota
EC	6.2.1.3
Description	decanoate-CoA ligase activity
COG category	I
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra842	Ggra842	Gracilaria gracilis GNS1m male	gene	tig00000202_pilon 48073..50229 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra842.t1.start1	Ggra842.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000202_pilon 48073..48075 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra842.t1.CDS1	Ggra842.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000202_pilon 48073..50229 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra842.t1.exon1	Ggra842.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000202_pilon 48073..50229 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra842.t1.stop1	Ggra842.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000202_pilon 50227..50229 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra842.t1	Ggra842.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000202_pilon 48073..50229 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000202_pilon:48073..50229+
coding sequence from alignment at tig00000202_pilon:48073..50229+

mRNA sequence

>Ggra842.t1 ID=Ggra842.t1|Name=Ggra842.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=719bp
MSCVAFQPSLGAPPSSRPRVARRLCARRQVRLAVSPPQPPETRVRPQLYP
PNVTPYPRPAGTSGRQALKVRSLQSIPELFLTLAEPPTADLTALVDVHHQ
PNVQLTFAQLAEQVNRCTAALRILGLRPHSNVALFSENSARWCIVDQAIM
SAGAAAAVRGVSAPPHELKFILHHSESKVLFVENVSVLRTMCAAGVHFSS
LQFVVLLFGHALPAKQFVPDTPVYSFEDLMTMGANYTADLVKPLPNRSDI
ATLLYTSGTTGNPKGVVLTHSNMLSQLEDVSLGCFDPSPGEVFLSILPCW
HVFERTAEYWSLSKGMKLVYTNKRHFREDLQKQKPHMLISVPRVFENLYG
AVMMKLKHASALRKSLFAFFMAVSMAFISTRRRLNKQHIHSAPLNGGLSR
AICALQMTLLTPLYALASLLIWRKIRAGFGGRLRICLSGGGSLAGYLEDF
FECAGIEIVIGYGLTETSPVIANRFGENNVRGSTGMELPRAYVKIADTET
GVPVPFGQQGRLCVKGPYVFSEYWKNQGATAKAFDSEGYFDTGDLAYRAS
GGDIVISGRAKELIVLSNGENIEPAPIEDVVVACSLIDQIMLVGQDEKAL
GALVVPNLTELESLGLAEKEINAKVKKLLDDEVGNREELQKLEAQLMKSA
ELMSTLNAEIAQRNRERVAYTANDRIAHTHLLLTPFSVENGMMTQTLKLK
KNIVADVYSKEIEAMYRK*

spliced messenger RNA

>Ggra842.t1 ID=Ggra842.t1|Name=Ggra842.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2157bp|location=Sequence derived from alignment at tig00000202_pilon:48073..50229+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTGCGTGGCGTTCCAACCGTCGCTGGGCGCGCCGCCATCGTCGCG
TCCGCGCGTGGCGCGTCGTCTGTGCGCGCGACGCCAAGTGCGTCTGGCGG
TTTCGCCGCCGCAGCCGCCGGAGACGCGCGTGCGCCCGCAGTTGTACCCG
CCGAATGTCACACCGTACCCccgtccggccggcacctccggccggcaggc
GCTCAAGGTGCGCTCGCTGCAGAGCATTCCCGAGCTCTTTCTCACCTTGG
CCGAGCCTCCCACGGCCGACCTCACCGCCCTGGTCGACGTGCACCATCAG
CCCAATGTGCAGCTCACGTTTGCGCAGCTGGCGGAGCAGGTGAACAGGTG
TACGGCAGCGCTGCGTATTTTGGGCTTGCGACCCCATTCCAACGTCGCCC
TGTTCTCGGAGAATTCCGCGCGATGGTGCATTGTAGACCAGGCTATTATG
TCCGCTGGAGCCGCCGCCGCCGTGCGAGGCGTTTCCGCGCCCCCACATGA
GCTGAAATTCATCCTGCACCATTCAGAGAGCAAGGTGCTCTTCGTGGAGA
ACGTCTCAGTTCTCAGAACCATGTGCGCCGCCGGCGTACATTTTTCTTCG
CTTCAGTTCGTTGTGCTGCTATTCGGCCATGCGCTGCCCGCCAAGCAATT
CGTGCCCGATACTCCCGTATACTCCTTCGAAGACCTTATGACTATGGGCG
CAAACTACACAGCCGACTTGGTCAAACCACTGCCAAACCGATCCGACATT
GCCACCTTGCTCTACACGTCTGGTACTACTGGTAATCCCAAGGGTGTGGT
GCTCACTCACTCCAATATGCTATCCCAATTGGAGGACGTTTCTCTTGGAT
GCTTTGATCCCTCTCCCGGCGAGGTGTTCCTCTCCATTCTACCGTGCTGG
CACGTTTTCGAGCGAACTGCCGAGTACTGGAGTTTGAGCAAGGGAATGAA
ACTCGTTTATACCAACAAGCGACATTTCAGGGAAGATCTACAAAAGCAGA
AACCTCACATGCTCATATCGGTTCCGCGAGTATTTGAGAATCTCTACGGC
GCTGTTATGATGAAGCTCAAGCACGCTTCCGCTTTGAGAAAGAGCTTGTT
TGCCTTTTTCATGGCCGTCAGTATGGCATTTATTAGCACCCGCCGTCGCC
TCAACAAGCAACACATTCACTCTGCTCCACTCAACGGCGGCCTTTCAAGA
GCAATTTGTGCCCTGCAAATGACCCTTCTCACACCGCTTTACGCACTTGC
AAGCCTGCTCATCTGGCGAAAGATTCGCGCCGGGTTCGGAGGCAGGCTTC
GCATTTGCCTATCTGGCGGCGGTAGTCTTGCGGGATACTTGGAAGACTTT
TTCGAGTGCGCCGGTATTGAAATTGTTATCGGATATGGTCTTACTGAGAC
TTCCCCTGTTATCGCGAACCGATTCGGTGAAAACAACGTGCGTGGTTCAA
CTGGCATGGAGCTACCGAGGGCTTACGTCAAGATCGCTGACACGGAAACA
GGAGTCCCTGTCCCATTTGGACAGCAAGGGCGCTTGTGCGTTAAGGGACC
GTATGTGTTCAGTGAGTATTGGAAAAATCAGGGCGCGACAGCGAAGGCGT
TTGACTCTGAGGGATACTTTGACACTGGAGACCTTGCATACAGAGCTTCT
GGTGGCGATATAGTGATAAGCGGCAGAGCCAAGGAGCTTATCGTGTTGTC
CAATGGAGAAAACATTGAACCAGCACCAATCGAGGATGTGGTGGTCGCCT
GTTCTTTGATTGACCAAATCATGCTGGTTGGACAAGACGAGAAAGCTCTG
GGAGCTCTTGTGGTACCCAACCTGACCGAATTGGAGTCACTCGGACTTGC
TGAAAAAGAGATAAACGCTAAGGTTAAGAAACTATTGGATGATGAAGTGG
GGAATCGAGAGGAGTTGCAAAAGCTTGAAGCACAGTTAATGAAATCTGCG
GAACTAATGTCTACTCTGAACGCCGAAATTGCACAGCGTAATCGAGAGCG
GGTGGCGTACACAGCGAACGACCGGATTGCACACACGCATTTGCTGTTGA
CGCCGTTCTCTGTCGAGAATGGTATGATGACTCAAACTCTCAAGCTTAAG
AAGAATATTGTAGCTGACGTGTATTCGAAGGAAATCGAAGCTATGTATAG
AAAGTAA

protein sequence of Ggra842.t1

>Ggra842.t1 ID=Ggra842.t1|Name=Ggra842.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=719bp
MSCVAFQPSLGAPPSSRPRVARRLCARRQVRLAVSPPQPPETRVRPQLYP
PNVTPYPRPAGTSGRQALKVRSLQSIPELFLTLAEPPTADLTALVDVHHQ
PNVQLTFAQLAEQVNRCTAALRILGLRPHSNVALFSENSARWCIVDQAIM
SAGAAAAVRGVSAPPHELKFILHHSESKVLFVENVSVLRTMCAAGVHFSS
LQFVVLLFGHALPAKQFVPDTPVYSFEDLMTMGANYTADLVKPLPNRSDI
ATLLYTSGTTGNPKGVVLTHSNMLSQLEDVSLGCFDPSPGEVFLSILPCW
HVFERTAEYWSLSKGMKLVYTNKRHFREDLQKQKPHMLISVPRVFENLYG
AVMMKLKHASALRKSLFAFFMAVSMAFISTRRRLNKQHIHSAPLNGGLSR
AICALQMTLLTPLYALASLLIWRKIRAGFGGRLRICLSGGGSLAGYLEDF
FECAGIEIVIGYGLTETSPVIANRFGENNVRGSTGMELPRAYVKIADTET
GVPVPFGQQGRLCVKGPYVFSEYWKNQGATAKAFDSEGYFDTGDLAYRAS
GGDIVISGRAKELIVLSNGENIEPAPIEDVVVACSLIDQIMLVGQDEKAL
GALVVPNLTELESLGLAEKEINAKVKKLLDDEVGNREELQKLEAQLMKSA
ELMSTLNAEIAQRNRERVAYTANDRIAHTHLLLTPFSVENGMMTQTLKLK
KNIVADVYSKEIEAMYRK*

mRNA from alignment at tig00000202_pilon:48073..50229+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra842.t1 ID=Ggra842.t1|Name=Ggra842.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2157bp|location=Sequence derived from alignment at tig00000202_pilon:48073..50229+ (Gracilaria gracilis GNS1m male)
ATGAGCTGCGTGGCGTTCCAACCGTCGCTGGGCGCGCCGCCATCGTCGCG
TCCGCGCGTGGCGCGTCGTCTGTGCGCGCGACGCCAAGTGCGTCTGGCGG
TTTCGCCGCCGCAGCCGCCGGAGACGCGCGTGCGCCCGCAGTTGTACCCG
CCGAATGTCACACCGTACCCccgtccggccggcacctccggccggcaggc
GCTCAAGGTGCGCTCGCTGCAGAGCATTCCCGAGCTCTTTCTCACCTTGG
CCGAGCCTCCCACGGCCGACCTCACCGCCCTGGTCGACGTGCACCATCAG
CCCAATGTGCAGCTCACGTTTGCGCAGCTGGCGGAGCAGGTGAACAGGTG
TACGGCAGCGCTGCGTATTTTGGGCTTGCGACCCCATTCCAACGTCGCCC
TGTTCTCGGAGAATTCCGCGCGATGGTGCATTGTAGACCAGGCTATTATG
TCCGCTGGAGCCGCCGCCGCCGTGCGAGGCGTTTCCGCGCCCCCACATGA
GCTGAAATTCATCCTGCACCATTCAGAGAGCAAGGTGCTCTTCGTGGAGA
ACGTCTCAGTTCTCAGAACCATGTGCGCCGCCGGCGTACATTTTTCTTCG
CTTCAGTTCGTTGTGCTGCTATTCGGCCATGCGCTGCCCGCCAAGCAATT
CGTGCCCGATACTCCCGTATACTCCTTCGAAGACCTTATGACTATGGGCG
CAAACTACACAGCCGACTTGGTCAAACCACTGCCAAACCGATCCGACATT
GCCACCTTGCTCTACACGTCTGGTACTACTGGTAATCCCAAGGGTGTGGT
GCTCACTCACTCCAATATGCTATCCCAATTGGAGGACGTTTCTCTTGGAT
GCTTTGATCCCTCTCCCGGCGAGGTGTTCCTCTCCATTCTACCGTGCTGG
CACGTTTTCGAGCGAACTGCCGAGTACTGGAGTTTGAGCAAGGGAATGAA
ACTCGTTTATACCAACAAGCGACATTTCAGGGAAGATCTACAAAAGCAGA
AACCTCACATGCTCATATCGGTTCCGCGAGTATTTGAGAATCTCTACGGC
GCTGTTATGATGAAGCTCAAGCACGCTTCCGCTTTGAGAAAGAGCTTGTT
TGCCTTTTTCATGGCCGTCAGTATGGCATTTATTAGCACCCGCCGTCGCC
TCAACAAGCAACACATTCACTCTGCTCCACTCAACGGCGGCCTTTCAAGA
GCAATTTGTGCCCTGCAAATGACCCTTCTCACACCGCTTTACGCACTTGC
AAGCCTGCTCATCTGGCGAAAGATTCGCGCCGGGTTCGGAGGCAGGCTTC
GCATTTGCCTATCTGGCGGCGGTAGTCTTGCGGGATACTTGGAAGACTTT
TTCGAGTGCGCCGGTATTGAAATTGTTATCGGATATGGTCTTACTGAGAC
TTCCCCTGTTATCGCGAACCGATTCGGTGAAAACAACGTGCGTGGTTCAA
CTGGCATGGAGCTACCGAGGGCTTACGTCAAGATCGCTGACACGGAAACA
GGAGTCCCTGTCCCATTTGGACAGCAAGGGCGCTTGTGCGTTAAGGGACC
GTATGTGTTCAGTGAGTATTGGAAAAATCAGGGCGCGACAGCGAAGGCGT
TTGACTCTGAGGGATACTTTGACACTGGAGACCTTGCATACAGAGCTTCT
GGTGGCGATATAGTGATAAGCGGCAGAGCCAAGGAGCTTATCGTGTTGTC
CAATGGAGAAAACATTGAACCAGCACCAATCGAGGATGTGGTGGTCGCCT
GTTCTTTGATTGACCAAATCATGCTGGTTGGACAAGACGAGAAAGCTCTG
GGAGCTCTTGTGGTACCCAACCTGACCGAATTGGAGTCACTCGGACTTGC
TGAAAAAGAGATAAACGCTAAGGTTAAGAAACTATTGGATGATGAAGTGG
GGAATCGAGAGGAGTTGCAAAAGCTTGAAGCACAGTTAATGAAATCTGCG
GAACTAATGTCTACTCTGAACGCCGAAATTGCACAGCGTAATCGAGAGCG
GGTGGCGTACACAGCGAACGACCGGATTGCACACACGCATTTGCTGTTGA
CGCCGTTCTCTGTCGAGAATGGTATGATGACTCAAACTCTCAAGCTTAAG
AAGAATATTGTAGCTGACGTGTATTCGAAGGAAATCGAAGCTATGTATAG
AAAGTAA

Coding sequence (CDS) from alignment at tig00000202_pilon:48073..50229+

>Ggra842.t1 ID=Ggra842.t1|Name=Ggra842.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2157bp|location=Sequence derived from alignment at tig00000202_pilon:48073..50229+ (Gracilaria gracilis GNS1m male)
ATGAGCTGCGTGGCGTTCCAACCGTCGCTGGGCGCGCCGCCATCGTCGCG
TCCGCGCGTGGCGCGTCGTCTGTGCGCGCGACGCCAAGTGCGTCTGGCGG
TTTCGCCGCCGCAGCCGCCGGAGACGCGCGTGCGCCCGCAGTTGTACCCG
CCGAATGTCACACCGTACCCccgtccggccggcacctccggccggcaggc
GCTCAAGGTGCGCTCGCTGCAGAGCATTCCCGAGCTCTTTCTCACCTTGG
CCGAGCCTCCCACGGCCGACCTCACCGCCCTGGTCGACGTGCACCATCAG
CCCAATGTGCAGCTCACGTTTGCGCAGCTGGCGGAGCAGGTGAACAGGTG
TACGGCAGCGCTGCGTATTTTGGGCTTGCGACCCCATTCCAACGTCGCCC
TGTTCTCGGAGAATTCCGCGCGATGGTGCATTGTAGACCAGGCTATTATG
TCCGCTGGAGCCGCCGCCGCCGTGCGAGGCGTTTCCGCGCCCCCACATGA
GCTGAAATTCATCCTGCACCATTCAGAGAGCAAGGTGCTCTTCGTGGAGA
ACGTCTCAGTTCTCAGAACCATGTGCGCCGCCGGCGTACATTTTTCTTCG
CTTCAGTTCGTTGTGCTGCTATTCGGCCATGCGCTGCCCGCCAAGCAATT
CGTGCCCGATACTCCCGTATACTCCTTCGAAGACCTTATGACTATGGGCG
CAAACTACACAGCCGACTTGGTCAAACCACTGCCAAACCGATCCGACATT
GCCACCTTGCTCTACACGTCTGGTACTACTGGTAATCCCAAGGGTGTGGT
GCTCACTCACTCCAATATGCTATCCCAATTGGAGGACGTTTCTCTTGGAT
GCTTTGATCCCTCTCCCGGCGAGGTGTTCCTCTCCATTCTACCGTGCTGG
CACGTTTTCGAGCGAACTGCCGAGTACTGGAGTTTGAGCAAGGGAATGAA
ACTCGTTTATACCAACAAGCGACATTTCAGGGAAGATCTACAAAAGCAGA
AACCTCACATGCTCATATCGGTTCCGCGAGTATTTGAGAATCTCTACGGC
GCTGTTATGATGAAGCTCAAGCACGCTTCCGCTTTGAGAAAGAGCTTGTT
TGCCTTTTTCATGGCCGTCAGTATGGCATTTATTAGCACCCGCCGTCGCC
TCAACAAGCAACACATTCACTCTGCTCCACTCAACGGCGGCCTTTCAAGA
GCAATTTGTGCCCTGCAAATGACCCTTCTCACACCGCTTTACGCACTTGC
AAGCCTGCTCATCTGGCGAAAGATTCGCGCCGGGTTCGGAGGCAGGCTTC
GCATTTGCCTATCTGGCGGCGGTAGTCTTGCGGGATACTTGGAAGACTTT
TTCGAGTGCGCCGGTATTGAAATTGTTATCGGATATGGTCTTACTGAGAC
TTCCCCTGTTATCGCGAACCGATTCGGTGAAAACAACGTGCGTGGTTCAA
CTGGCATGGAGCTACCGAGGGCTTACGTCAAGATCGCTGACACGGAAACA
GGAGTCCCTGTCCCATTTGGACAGCAAGGGCGCTTGTGCGTTAAGGGACC
GTATGTGTTCAGTGAGTATTGGAAAAATCAGGGCGCGACAGCGAAGGCGT
TTGACTCTGAGGGATACTTTGACACTGGAGACCTTGCATACAGAGCTTCT
GGTGGCGATATAGTGATAAGCGGCAGAGCCAAGGAGCTTATCGTGTTGTC
CAATGGAGAAAACATTGAACCAGCACCAATCGAGGATGTGGTGGTCGCCT
GTTCTTTGATTGACCAAATCATGCTGGTTGGACAAGACGAGAAAGCTCTG
GGAGCTCTTGTGGTACCCAACCTGACCGAATTGGAGTCACTCGGACTTGC
TGAAAAAGAGATAAACGCTAAGGTTAAGAAACTATTGGATGATGAAGTGG
GGAATCGAGAGGAGTTGCAAAAGCTTGAAGCACAGTTAATGAAATCTGCG
GAACTAATGTCTACTCTGAACGCCGAAATTGCACAGCGTAATCGAGAGCG
GGTGGCGTACACAGCGAACGACCGGATTGCACACACGCATTTGCTGTTGA
CGCCGTTCTCTGTCGAGAATGGTATGATGACTCAAACTCTCAAGCTTAAG
AAGAATATTGTAGCTGACGTGTATTCGAAGGAAATCGAAGCTATGTATAG
AAAGTAA