Ggra8414.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8414.t1
Unique Name	Ggra8414.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	609

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000041_pilon	contig	tig00000041_pilon:504989..506815 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7370.XP_005179811.1
Preferred name	NELFCD
PFAMs	TH1
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K15181
GOs	GO:0000122,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005703,GO:0005705,GO:0006139,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006725,GO:0006807,GO:0008023,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016070,GO:0017053,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032021,GO:0032774,GO:0032784,GO:0032785,GO:0032991,GO:0034243,GO:0034244,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0098687,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Evalue	9.34e-08
EggNOG OGs	28HGD@1\|root,2QPUE@2759\|Eukaryota,38BBU@33154\|Opisthokonta,3BCYY@33208\|Metazoa,3CS4Q@33213\|Bilateria,41YCG@6656\|Arthropoda,3SGPQ@50557\|Insecta,45175@7147\|Diptera
Description	It is involved in the biological process described with negative regulation of transcription, DNA-templated
COG category	K
BRITE	ko00000,ko03021

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8414	Ggra8414	Gracilaria gracilis GNS1m male	gene	tig00000041_pilon 504989..506815 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8414.t1.start1	Ggra8414.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000041_pilon 504989..504991 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8414.t1.CDS1	Ggra8414.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000041_pilon 504989..506815 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8414.t1.exon1	Ggra8414.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000041_pilon 504989..506815 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8414.t1.stop1	Ggra8414.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000041_pilon 506813..506815 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8414.t1	Ggra8414.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000041_pilon 504989..506815 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000041_pilon:504989..506815+
coding sequence from alignment at tig00000041_pilon:504989..506815+

mRNA sequence

>Ggra8414.t1 ID=Ggra8414.t1|Name=Ggra8414.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=609bp
MSTSLNFFEGVDAILDENIEKELRSYVSAGGNLTEACETLSQSYDGLPDM
IRLLIEWIDSYGNGIQALEKAFQTVLTANEANIIPKLDDSLAKPGAKEFL
ATIVSSSRWSPVVSEMALRHKKSLLYDMLMREKRLKDADLSLSTVSSEQV
FVKALQEQFSKFFESSACQTDVSLQALFERVTALCSYDEHTLVVGTRFLC
YMSRNASQQLTTGVYTRVGEEVRKAVVERATTTTSVSEQEKRHELFRMFA
MIDAAVAGAAVSRTVVDALVSILVCEGGKRSYSKEIETLVGVYGFLLGDI
GASDMIPDGNSNSVVNATLDFSVKEKTFCIELLCHMEIVEGIMNATFSHY
HRSYATERVPDIDRRKCLVLLLTYIDMFRTMPEQDIRAVLDNSSLRESFR
NNLKSGTERINIVVAACEACPPGTPWFKIRRGHAKTLVQSVSNPLMAYGV
YMWACEGLKGSSDARALIMTAPKHLAFLQAVAETHVQLRPKILDAVHEAF
VRDYDGLDITQIEDMRDMYVKYIISLARIQMAPEVVDAFFDKWAGDERID
QAHLRRFVSGLLDTISLPFTKELEEKFARLVGHTRVNSALDGETKNRISR
LQSALRAS*

spliced messenger RNA

>Ggra8414.t1 ID=Ggra8414.t1|Name=Ggra8414.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1827bp|location=Sequence derived from alignment at tig00000041_pilon:504989..506815+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTACCTCCCTCAATTTCTTTGAGGGCGTTGATGCCATATTAGATGA
AAACATTGAAAAGGAACTAAGGTCGTATGTCAGCGCTGGCGGAAACCTCA
CGGAAGCATGCGAAACTCTATCCCAAAGCTACGATGGGCTTCCAGATATG
ATTCGACTTCTTATCGAGTGGATTGACTCCTATGGTAATGGAATTCAAGC
TCTCGAAAAGGCGTTTCAAACCGTCCTCACTGCAAATGAGGCCAACATTA
TTCCCAAGTTGGATGACTCACTTGCCAAACCCGGCGCGAAAGAATTTCTT
GCAACCATCGTATCTTCGAGCAGATGGAGTCCCGTCGTCAGCGAAATGGC
CCTTCGCCACAAGAAGAGCCTTCTTTATGATATGCTCATGCGCGAAAAGA
GGTTGAAGGACGCCGATTTAAGTCTTAGCACCGTCTCGTCGGAACAAGTA
TTTGTCAAAGCGTTGCAAGAACAGTTTTCCAAATTCTTTGAGTCCTCTGC
TTGTCAAACGGATGTATCTTTACAGGCCTTGTTCGAACGAGTCACCGCTT
TATGTTCGTACGATGAGCACACGCTTGTTGTTGGTACTCGCTTTCTCTGC
TACATGTCACGGAATGCCAGCCAGCAGCTAACAACAGGCGTTTATACGAG
AGTAGGAGAAGAAGTGAGGAAGGCCGTAGTCGAGAGGGCAACTACAACCA
CATCAGTATCGGAACAGGAGAAGAGGCACGAGTTGTTTCGAATGTTTGCA
ATGATCGATGCTGCCGTTGCAGGGGCCGCCGTAAGTCGAACTGTCGTAGA
CGCACTTGTAAGTATTCTAGTGTGCGAGGGAGGGAAACGGTCTTATTCAA
AGGAGATAGAAACTCTGGTCGGCGTTTACGGTTTCCTCCTCGGGGATATT
GGTGCGTCGGATATGATCCCAGATGGTAATTCGAATTCGGTAGTTAACGC
AACTCTCGACTTCTCCGTCAAAGAGAAGACGTTTTGCATCGAACTCCTCT
GCCACATGGAGATCGTTGAAGGCATCATGAACGCTACGTTCAGCCATTAC
CATCGTTCGTATGCGACTGAAAGAGTTCCGGATATTGACAGGAGAAAATG
CCTTGTGTTGCTATTGACGTACATCGACATGTTTAGGACTATGCCCGAAC
AGGATATTCGAGCTGTCCTGGACAACTCCTCCCTAAGAGAGAGCTTCAGG
AATAATCTCAAGTCAGGTACTGAGAGGATTAACATTGTGGTAGCAGCTTG
TGAAGCCTGCCCTCCAGGGACCCCATGGTTCAAAATACGGCGAGGTCATG
CAAAGACATTAGTTCAATCTGTCAGCAATCCTTTAATGGCGTATGGTGTG
TATATGTGGGCATGTGAAGGTCTGAAAGGAAGTTCAGATGCTAGAGCGCT
GATAATGACCGCACCAAAGCATTTGGCCTTCCTTCAAGCTGTTGCGGAAA
CGCATGTCCAGCTTCGGCCAAAGATCCTGGATGCCGTTCACGAAGCGTTT
GTCCGGGATTATGACGGACTGGACATCACACAGATTGAAGACATGCGTGA
TATGTACGTCAAGTACATTATATCTCTGGCTCGTATACAAATGGCTCCGG
AAGTTGTAGACGCGTTCTTCGACAAATGGGCAGGCGATGAAAGAATTGAC
CAAGCACACCTGAGACGGTTTGTGTCGGGTCTGCTTGACACAATCTCGCT
GCCGTTCACCAAGGAACTCGAAGAAAAATTCGCTCGGTTGGTTGGACACA
CGCGAGTGAATTCGGCTCTGGATGGCGAGACCAAGAATAGGATAAGTCGG
TTGCAATCTGCTCTCCGAGCTAGCTAA

protein sequence of Ggra8414.t1

>Ggra8414.t1 ID=Ggra8414.t1|Name=Ggra8414.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=609bp
MSTSLNFFEGVDAILDENIEKELRSYVSAGGNLTEACETLSQSYDGLPDM
IRLLIEWIDSYGNGIQALEKAFQTVLTANEANIIPKLDDSLAKPGAKEFL
ATIVSSSRWSPVVSEMALRHKKSLLYDMLMREKRLKDADLSLSTVSSEQV
FVKALQEQFSKFFESSACQTDVSLQALFERVTALCSYDEHTLVVGTRFLC
YMSRNASQQLTTGVYTRVGEEVRKAVVERATTTTSVSEQEKRHELFRMFA
MIDAAVAGAAVSRTVVDALVSILVCEGGKRSYSKEIETLVGVYGFLLGDI
GASDMIPDGNSNSVVNATLDFSVKEKTFCIELLCHMEIVEGIMNATFSHY
HRSYATERVPDIDRRKCLVLLLTYIDMFRTMPEQDIRAVLDNSSLRESFR
NNLKSGTERINIVVAACEACPPGTPWFKIRRGHAKTLVQSVSNPLMAYGV
YMWACEGLKGSSDARALIMTAPKHLAFLQAVAETHVQLRPKILDAVHEAF
VRDYDGLDITQIEDMRDMYVKYIISLARIQMAPEVVDAFFDKWAGDERID
QAHLRRFVSGLLDTISLPFTKELEEKFARLVGHTRVNSALDGETKNRISR
LQSALRAS*

mRNA from alignment at tig00000041_pilon:504989..506815+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8414.t1 ID=Ggra8414.t1|Name=Ggra8414.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1827bp|location=Sequence derived from alignment at tig00000041_pilon:504989..506815+ (Gracilaria gracilis GNS1m male)
ATGAGTACCTCCCTCAATTTCTTTGAGGGCGTTGATGCCATATTAGATGA
AAACATTGAAAAGGAACTAAGGTCGTATGTCAGCGCTGGCGGAAACCTCA
CGGAAGCATGCGAAACTCTATCCCAAAGCTACGATGGGCTTCCAGATATG
ATTCGACTTCTTATCGAGTGGATTGACTCCTATGGTAATGGAATTCAAGC
TCTCGAAAAGGCGTTTCAAACCGTCCTCACTGCAAATGAGGCCAACATTA
TTCCCAAGTTGGATGACTCACTTGCCAAACCCGGCGCGAAAGAATTTCTT
GCAACCATCGTATCTTCGAGCAGATGGAGTCCCGTCGTCAGCGAAATGGC
CCTTCGCCACAAGAAGAGCCTTCTTTATGATATGCTCATGCGCGAAAAGA
GGTTGAAGGACGCCGATTTAAGTCTTAGCACCGTCTCGTCGGAACAAGTA
TTTGTCAAAGCGTTGCAAGAACAGTTTTCCAAATTCTTTGAGTCCTCTGC
TTGTCAAACGGATGTATCTTTACAGGCCTTGTTCGAACGAGTCACCGCTT
TATGTTCGTACGATGAGCACACGCTTGTTGTTGGTACTCGCTTTCTCTGC
TACATGTCACGGAATGCCAGCCAGCAGCTAACAACAGGCGTTTATACGAG
AGTAGGAGAAGAAGTGAGGAAGGCCGTAGTCGAGAGGGCAACTACAACCA
CATCAGTATCGGAACAGGAGAAGAGGCACGAGTTGTTTCGAATGTTTGCA
ATGATCGATGCTGCCGTTGCAGGGGCCGCCGTAAGTCGAACTGTCGTAGA
CGCACTTGTAAGTATTCTAGTGTGCGAGGGAGGGAAACGGTCTTATTCAA
AGGAGATAGAAACTCTGGTCGGCGTTTACGGTTTCCTCCTCGGGGATATT
GGTGCGTCGGATATGATCCCAGATGGTAATTCGAATTCGGTAGTTAACGC
AACTCTCGACTTCTCCGTCAAAGAGAAGACGTTTTGCATCGAACTCCTCT
GCCACATGGAGATCGTTGAAGGCATCATGAACGCTACGTTCAGCCATTAC
CATCGTTCGTATGCGACTGAAAGAGTTCCGGATATTGACAGGAGAAAATG
CCTTGTGTTGCTATTGACGTACATCGACATGTTTAGGACTATGCCCGAAC
AGGATATTCGAGCTGTCCTGGACAACTCCTCCCTAAGAGAGAGCTTCAGG
AATAATCTCAAGTCAGGTACTGAGAGGATTAACATTGTGGTAGCAGCTTG
TGAAGCCTGCCCTCCAGGGACCCCATGGTTCAAAATACGGCGAGGTCATG
CAAAGACATTAGTTCAATCTGTCAGCAATCCTTTAATGGCGTATGGTGTG
TATATGTGGGCATGTGAAGGTCTGAAAGGAAGTTCAGATGCTAGAGCGCT
GATAATGACCGCACCAAAGCATTTGGCCTTCCTTCAAGCTGTTGCGGAAA
CGCATGTCCAGCTTCGGCCAAAGATCCTGGATGCCGTTCACGAAGCGTTT
GTCCGGGATTATGACGGACTGGACATCACACAGATTGAAGACATGCGTGA
TATGTACGTCAAGTACATTATATCTCTGGCTCGTATACAAATGGCTCCGG
AAGTTGTAGACGCGTTCTTCGACAAATGGGCAGGCGATGAAAGAATTGAC
CAAGCACACCTGAGACGGTTTGTGTCGGGTCTGCTTGACACAATCTCGCT
GCCGTTCACCAAGGAACTCGAAGAAAAATTCGCTCGGTTGGTTGGACACA
CGCGAGTGAATTCGGCTCTGGATGGCGAGACCAAGAATAGGATAAGTCGG
TTGCAATCTGCTCTCCGAGCTAGCTAA

Coding sequence (CDS) from alignment at tig00000041_pilon:504989..506815+

>Ggra8414.t1 ID=Ggra8414.t1|Name=Ggra8414.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1827bp|location=Sequence derived from alignment at tig00000041_pilon:504989..506815+ (Gracilaria gracilis GNS1m male)
ATGAGTACCTCCCTCAATTTCTTTGAGGGCGTTGATGCCATATTAGATGA
AAACATTGAAAAGGAACTAAGGTCGTATGTCAGCGCTGGCGGAAACCTCA
CGGAAGCATGCGAAACTCTATCCCAAAGCTACGATGGGCTTCCAGATATG
ATTCGACTTCTTATCGAGTGGATTGACTCCTATGGTAATGGAATTCAAGC
TCTCGAAAAGGCGTTTCAAACCGTCCTCACTGCAAATGAGGCCAACATTA
TTCCCAAGTTGGATGACTCACTTGCCAAACCCGGCGCGAAAGAATTTCTT
GCAACCATCGTATCTTCGAGCAGATGGAGTCCCGTCGTCAGCGAAATGGC
CCTTCGCCACAAGAAGAGCCTTCTTTATGATATGCTCATGCGCGAAAAGA
GGTTGAAGGACGCCGATTTAAGTCTTAGCACCGTCTCGTCGGAACAAGTA
TTTGTCAAAGCGTTGCAAGAACAGTTTTCCAAATTCTTTGAGTCCTCTGC
TTGTCAAACGGATGTATCTTTACAGGCCTTGTTCGAACGAGTCACCGCTT
TATGTTCGTACGATGAGCACACGCTTGTTGTTGGTACTCGCTTTCTCTGC
TACATGTCACGGAATGCCAGCCAGCAGCTAACAACAGGCGTTTATACGAG
AGTAGGAGAAGAAGTGAGGAAGGCCGTAGTCGAGAGGGCAACTACAACCA
CATCAGTATCGGAACAGGAGAAGAGGCACGAGTTGTTTCGAATGTTTGCA
ATGATCGATGCTGCCGTTGCAGGGGCCGCCGTAAGTCGAACTGTCGTAGA
CGCACTTGTAAGTATTCTAGTGTGCGAGGGAGGGAAACGGTCTTATTCAA
AGGAGATAGAAACTCTGGTCGGCGTTTACGGTTTCCTCCTCGGGGATATT
GGTGCGTCGGATATGATCCCAGATGGTAATTCGAATTCGGTAGTTAACGC
AACTCTCGACTTCTCCGTCAAAGAGAAGACGTTTTGCATCGAACTCCTCT
GCCACATGGAGATCGTTGAAGGCATCATGAACGCTACGTTCAGCCATTAC
CATCGTTCGTATGCGACTGAAAGAGTTCCGGATATTGACAGGAGAAAATG
CCTTGTGTTGCTATTGACGTACATCGACATGTTTAGGACTATGCCCGAAC
AGGATATTCGAGCTGTCCTGGACAACTCCTCCCTAAGAGAGAGCTTCAGG
AATAATCTCAAGTCAGGTACTGAGAGGATTAACATTGTGGTAGCAGCTTG
TGAAGCCTGCCCTCCAGGGACCCCATGGTTCAAAATACGGCGAGGTCATG
CAAAGACATTAGTTCAATCTGTCAGCAATCCTTTAATGGCGTATGGTGTG
TATATGTGGGCATGTGAAGGTCTGAAAGGAAGTTCAGATGCTAGAGCGCT
GATAATGACCGCACCAAAGCATTTGGCCTTCCTTCAAGCTGTTGCGGAAA
CGCATGTCCAGCTTCGGCCAAAGATCCTGGATGCCGTTCACGAAGCGTTT
GTCCGGGATTATGACGGACTGGACATCACACAGATTGAAGACATGCGTGA
TATGTACGTCAAGTACATTATATCTCTGGCTCGTATACAAATGGCTCCGG
AAGTTGTAGACGCGTTCTTCGACAAATGGGCAGGCGATGAAAGAATTGAC
CAAGCACACCTGAGACGGTTTGTGTCGGGTCTGCTTGACACAATCTCGCT
GCCGTTCACCAAGGAACTCGAAGAAAAATTCGCTCGGTTGGTTGGACACA
CGCGAGTGAATTCGGCTCTGGATGGCGAGACCAAGAATAGGATAAGTCGG
TTGCAATCTGCTCTCCGAGCTAGCTAA