Ggra8410.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8410.t1
Unique NameGgra8410.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length156
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:494787..495372 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX46501
Max annot lvl2759|Eukaryota
Evalue1.94e-31
EggNOG OGs2BCYA@1|root,2S115@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8410Ggra8410Gracilaria gracilis GNS1m malegenetig00000041_pilon 494787..495372 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8410.t1Ggra8410.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 494787..495372 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8410.t1.stop1Ggra8410.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 494787..494789 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8410.t1.CDS1Ggra8410.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 494787..494900 -
Ggra8410.t1.CDS2Ggra8410.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000041_pilon 495019..495372 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8410.t1.exon1Ggra8410.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 494787..494900 -
Ggra8410.t1.exon2Ggra8410.t1.exon2Gracilaria gracilis GNS1m maleexontig00000041_pilon 495019..495372 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8410.t1.intron1Ggra8410.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000041_pilon 494901..495018 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8410.t1.start1Ggra8410.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 495370..495372 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8410.t1 ID=Ggra8410.t1|Name=Ggra8410.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=156bp
MKHCVQAFLAPAPIARSSFQNKAVSQTVPTSYVRRTTHVPPHPTVIRLTP
TALDSLVLTEQNVNQALDEVKVKLGSIFGNSHENREVGITGDVVLATLDG
PVVVLRLQGRFWHKRSDVLARVSAYLMERIPEICDVQIEEEQQLQDSEAE
GIRLA*
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spliced messenger RNA

>Ggra8410.t1 ID=Ggra8410.t1|Name=Ggra8410.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=468bp|location=Sequence derived from alignment at tig00000041_pilon:494787..495372- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACATTGTGTGCAAGCGTTTCTTGCGCCAGCACCTATCGCCCGATC
GTCATTTCAGAACAAGGCCGTTTCACAAACAGTACCAACGAGCTACGTTC
GCCGTACGACACATGTACCACCGCATCCAACCGTAATTCGCCTCACTCCA
ACCGCGTTAGACTCTCTCGTACTTACCGAACAAAACGTTAACCAGGCCTT
AGACGAAGTCAAAGTCAAGCTTGGCAGCATATTCGGAAACAGCCACGAGA
ACCGAGAGGTAGGTATAACTGGCGATGTTGTGCTTGCAACCCTGGACGGT
CCCGTGGTAGTGCTCCGTCTACAAGGCCGTTTCTGGCACAAACGTTCAGA
TGTGCTTGCAAGGGTATCTGCATACCTCATGGAACGCATTCCAGAAATCT
GCGATGTACAGATCGAAGAGGAACAGCAGTTACAAGATTCAGAGGCGGAG
GGCATCCGCCTCGCGTAG
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protein sequence of Ggra8410.t1

>Ggra8410.t1 ID=Ggra8410.t1|Name=Ggra8410.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=156bp
MKHCVQAFLAPAPIARSSFQNKAVSQTVPTSYVRRTTHVPPHPTVIRLTP
TALDSLVLTEQNVNQALDEVKVKLGSIFGNSHENREVGITGDVVLATLDG
PVVVLRLQGRFWHKRSDVLARVSAYLMERIPEICDVQIEEEQQLQDSEAE
GIRLA*
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mRNA from alignment at tig00000041_pilon:494787..495372-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8410.t1 ID=Ggra8410.t1|Name=Ggra8410.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=586bp|location=Sequence derived from alignment at tig00000041_pilon:494787..495372- (Gracilaria gracilis GNS1m male)
ATGAAACATTGTGTGCAAGCGTTTCTTGCGCCAGCACCTATCGCCCGATC
GTCATTTCAGAACAAGGCCGTTTCACAAACAGTACCAACGAGCTACGTTC
GCCGTACGACACATGTACCACCGCATCCAACCGTAATTCGCCTCACTCCA
ACCGCGTTAGACTCTCTCGTACTTACCGAACAAAACGTTAACCAGGCCTT
AGACGAAGTCAAAGTCAAGCTTGGCAGCATATTCGGAAACAGCCACGAGA
ACCGAGAGGTAGGTATAACTGGCGATGTTGTGCTTGCAACCCTGGACGGT
CCCGTGGTAGTGCTCCGTCTACAAGGCCGTTTCTGGCACAAACGTTCAGA
TGTGGTACGTTCTTCGCCAATTTCTTCCTCATATGCGCGTTTTGCGCCCG
ATATTCTATCGCTGCCGAGTCTTTGTGTTTTGTTTCCATTCACTAATTGT
GCCACCTTCGTCTTGTACACAGCTTGCAAGGGTATCTGCATACCTCATGG
AACGCATTCCAGAAATCTGCGATGTACAGATCGAAGAGGAACAGCAGTTA
CAAGATTCAGAGGCGGAGGGCATCCGCCTCGCGTAG
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Coding sequence (CDS) from alignment at tig00000041_pilon:494787..495372-

>Ggra8410.t1 ID=Ggra8410.t1|Name=Ggra8410.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=468bp|location=Sequence derived from alignment at tig00000041_pilon:494787..495372- (Gracilaria gracilis GNS1m male)
ATGAAACATTGTGTGCAAGCGTTTCTTGCGCCAGCACCTATCGCCCGATC
GTCATTTCAGAACAAGGCCGTTTCACAAACAGTACCAACGAGCTACGTTC
GCCGTACGACACATGTACCACCGCATCCAACCGTAATTCGCCTCACTCCA
ACCGCGTTAGACTCTCTCGTACTTACCGAACAAAACGTTAACCAGGCCTT
AGACGAAGTCAAAGTCAAGCTTGGCAGCATATTCGGAAACAGCCACGAGA
ACCGAGAGGTAGGTATAACTGGCGATGTTGTGCTTGCAACCCTGGACGGT
CCCGTGGTAGTGCTCCGTCTACAAGGCCGTTTCTGGCACAAACGTTCAGA
TGTGCTTGCAAGGGTATCTGCATACCTCATGGAACGCATTCCAGAAATCT
GCGATGTACAGATCGAAGAGGAACAGCAGTTACAAGATTCAGAGGCGGAG
GGCATCCGCCTCGCGTAG
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