Ggra8408.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8408.t1
Unique NameGgra8408.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length291
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:491819..492778 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8408Ggra8408Gracilaria gracilis GNS1m malegenetig00000041_pilon 491819..492778 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8408.t1Ggra8408.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 491819..492778 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8408.t1.stop1Ggra8408.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 491819..491821 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8408.t1.CDS1Ggra8408.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 491819..491914 -
Ggra8408.t1.CDS2Ggra8408.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000041_pilon 492002..492778 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8408.t1.exon1Ggra8408.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 491819..491914 -
Ggra8408.t1.exon2Ggra8408.t1.exon2Gracilaria gracilis GNS1m maleexontig00000041_pilon 492002..492778 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8408.t1.intron1Ggra8408.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000041_pilon 491915..492001 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8408.t1.start1Ggra8408.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 492776..492778 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8408.t1 ID=Ggra8408.t1|Name=Ggra8408.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=291bp
MIDEQAVISAERSVEAVTWLRNLLTTQVSAEEATRQTASLQATPTAIQTI
EAVRKVVEHRQAQQRQTNKALDALAKQYDSVLQQWEDGGASILRDVLDPD
ALSETHKLADVCTALKLEPERALSRVHQMSALSRLAEQYLAVDHRHTQRK
FALGTAQQAVRDAVDELRNAIAVLQRVSDEVQTQEREKGAMSEREQALRQ
DIDKYGAQRKEAEDEVGRTGLQAQFTHAKIAQDGERLRQVEHKLEVVKLQ
LEKYHGMPADMDICGEMVSGMKKQIDEIDREIEEAINSMN*
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spliced messenger RNA

>Ggra8408.t1 ID=Ggra8408.t1|Name=Ggra8408.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=873bp|location=Sequence derived from alignment at tig00000041_pilon:491819..492778- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGACGAACAGGCGGTCATCAGCGCCGAGCGCTCAGTGGAGGCCGT
AACCTGGCTTCGCAACTTGCTCACCACACAAGTGTCAGCCGAAGAAGCCA
CGCGTCAAACCGCCAGCCTGCAAGCCACGCCAACGGCCATTCAAACCATT
GAAGCAGTCCGCAAAGTCGTGGAGCACCGACAAGCACAGCAACGGCAAAC
AAACAAAGCGCTCGACGCACTCGCCAAGCAATACGACAGTGTTCTACAGC
AATGGGAGGACGGCGGCGCGAGCATATTGCGCGACGTGCTCGACCCCGAC
GCGCTGAGCGAAACGCACAAGCTGGCAGATGTGTGCACCGCGCTCAAACT
GGAGCCGGAACGCGCGCTGTCGCGCGTGCATCAGATGAGCGCGCTGTCGC
GGCTGGCGGAGCAGTATCTGGCGGTGGACCACAGACACACGCAACGAAAG
TTCGCGTTGGGGACGGCGCAGCAGGCGGTTCGCGACGCGGTGGACGAGCT
ACGAAACGCAATAGCAGTGCTGCAGCGGGTGTCGGATGAGGTGCAGACGC
AAGAGAGGGAGAAGGGAGCTATGAGCGAGCGCGAGCAAGCGCTGCGGCAG
GACATTGACAAGTACGGCGCGCAGAGGAAGGAGGCGGAGGATGAGGTGGG
GCGCACGGGGTTGCAGGCGCAATTCACGCACGCGAAGATCGCGCAGGATG
GCGAGCGGTTGCGGCAAGTGGAGCACAAGCTGGAGGTGGTGAAGCTGCAA
CTGGAAAAATACCACGGCATGCCAGCGGATATGGATATATGCGGTGAGAT
GGTGTCGGGTATGAAGAAGCAGATTGATGAGATTGACAGGGAGATTGAGG
AAGCGATCAATTCAATGAACTGA
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protein sequence of Ggra8408.t1

>Ggra8408.t1 ID=Ggra8408.t1|Name=Ggra8408.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=291bp
MIDEQAVISAERSVEAVTWLRNLLTTQVSAEEATRQTASLQATPTAIQTI
EAVRKVVEHRQAQQRQTNKALDALAKQYDSVLQQWEDGGASILRDVLDPD
ALSETHKLADVCTALKLEPERALSRVHQMSALSRLAEQYLAVDHRHTQRK
FALGTAQQAVRDAVDELRNAIAVLQRVSDEVQTQEREKGAMSEREQALRQ
DIDKYGAQRKEAEDEVGRTGLQAQFTHAKIAQDGERLRQVEHKLEVVKLQ
LEKYHGMPADMDICGEMVSGMKKQIDEIDREIEEAINSMN*
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mRNA from alignment at tig00000041_pilon:491819..492778-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8408.t1 ID=Ggra8408.t1|Name=Ggra8408.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=960bp|location=Sequence derived from alignment at tig00000041_pilon:491819..492778- (Gracilaria gracilis GNS1m male)
ATGATTGACGAACAGGCGGTCATCAGCGCCGAGCGCTCAGTGGAGGCCGT
AACCTGGCTTCGCAACTTGCTCACCACACAAGTGTCAGCCGAAGAAGCCA
CGCGTCAAACCGCCAGCCTGCAAGCCACGCCAACGGCCATTCAAACCATT
GAAGCAGTCCGCAAAGTCGTGGAGCACCGACAAGCACAGCAACGGCAAAC
AAACAAAGCGCTCGACGCACTCGCCAAGCAATACGACAGTGTTCTACAGC
AATGGGAGGACGGCGGCGCGAGCATATTGCGCGACGTGCTCGACCCCGAC
GCGCTGAGCGAAACGCACAAGCTGGCAGATGTGTGCACCGCGCTCAAACT
GGAGCCGGAACGCGCGCTGTCGCGCGTGCATCAGATGAGCGCGCTGTCGC
GGCTGGCGGAGCAGTATCTGGCGGTGGACCACAGACACACGCAACGAAAG
TTCGCGTTGGGGACGGCGCAGCAGGCGGTTCGCGACGCGGTGGACGAGCT
ACGAAACGCAATAGCAGTGCTGCAGCGGGTGTCGGATGAGGTGCAGACGC
AAGAGAGGGAGAAGGGAGCTATGAGCGAGCGCGAGCAAGCGCTGCGGCAG
GACATTGACAAGTACGGCGCGCAGAGGAAGGAGGCGGAGGATGAGGTGGG
GCGCACGGGGTTGCAGGCGCAATTCACGCACGCGAAGATCGCGCAGGATG
GCGAGCGGTTGCGGCAAGTGGAGCACAAGCTGGAGGTGGTGAAGCTGCAA
CTGGAAAAATACCACGGCATGCCAGCGGTAAGTGCAAGTGTTGTTTTAAC
AGCGTTGTGCGCGAAAGCACGTCTGACGTTTTTGTTTGTTTGTATTGTGG
GTTGCTGCGTGCAGGATATGGATATATGCGGTGAGATGGTGTCGGGTATG
AAGAAGCAGATTGATGAGATTGACAGGGAGATTGAGGAAGCGATCAATTC
AATGAACTGA
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Coding sequence (CDS) from alignment at tig00000041_pilon:491819..492778-

>Ggra8408.t1 ID=Ggra8408.t1|Name=Ggra8408.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=873bp|location=Sequence derived from alignment at tig00000041_pilon:491819..492778- (Gracilaria gracilis GNS1m male)
ATGATTGACGAACAGGCGGTCATCAGCGCCGAGCGCTCAGTGGAGGCCGT
AACCTGGCTTCGCAACTTGCTCACCACACAAGTGTCAGCCGAAGAAGCCA
CGCGTCAAACCGCCAGCCTGCAAGCCACGCCAACGGCCATTCAAACCATT
GAAGCAGTCCGCAAAGTCGTGGAGCACCGACAAGCACAGCAACGGCAAAC
AAACAAAGCGCTCGACGCACTCGCCAAGCAATACGACAGTGTTCTACAGC
AATGGGAGGACGGCGGCGCGAGCATATTGCGCGACGTGCTCGACCCCGAC
GCGCTGAGCGAAACGCACAAGCTGGCAGATGTGTGCACCGCGCTCAAACT
GGAGCCGGAACGCGCGCTGTCGCGCGTGCATCAGATGAGCGCGCTGTCGC
GGCTGGCGGAGCAGTATCTGGCGGTGGACCACAGACACACGCAACGAAAG
TTCGCGTTGGGGACGGCGCAGCAGGCGGTTCGCGACGCGGTGGACGAGCT
ACGAAACGCAATAGCAGTGCTGCAGCGGGTGTCGGATGAGGTGCAGACGC
AAGAGAGGGAGAAGGGAGCTATGAGCGAGCGCGAGCAAGCGCTGCGGCAG
GACATTGACAAGTACGGCGCGCAGAGGAAGGAGGCGGAGGATGAGGTGGG
GCGCACGGGGTTGCAGGCGCAATTCACGCACGCGAAGATCGCGCAGGATG
GCGAGCGGTTGCGGCAAGTGGAGCACAAGCTGGAGGTGGTGAAGCTGCAA
CTGGAAAAATACCACGGCATGCCAGCGGATATGGATATATGCGGTGAGAT
GGTGTCGGGTATGAAGAAGCAGATTGATGAGATTGACAGGGAGATTGAGG
AAGCGATCAATTCAATGAACTGA
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