Ggra840.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra840.t1
Unique Name	Ggra840.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	425

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000202_pilon	contig	tig00000202_pilon:42692..43966 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra840	Ggra840	Gracilaria gracilis GNS1m male	gene	tig00000202_pilon 42692..43966 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra840.t1.start1	Ggra840.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000202_pilon 42692..42694 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra840.t1.CDS1	Ggra840.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000202_pilon 42692..43966 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra840.t1.exon1	Ggra840.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000202_pilon 42692..43966 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra840.t1.stop1	Ggra840.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000202_pilon 43964..43966 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra840.t1	Ggra840.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000202_pilon 42692..43966 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000202_pilon:42692..43966+
coding sequence from alignment at tig00000202_pilon:42692..43966+

mRNA sequence

>Ggra840.t1 ID=Ggra840.t1|Name=Ggra840.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=425bp
MAAVQPKSDMPPPPPPAPSAAAAVAAAPARSRSSRKLPRPGTFSHARLPR
TPSVPRGRSYHGKPLSAAAHAAQQGYFARKAAKLYAERKKAVSAGAPVAA
GATAAAPAGSPHGDHVAVQADMSAALKAANHNQPPVDVINITVDAQGVKI
DENKPRLSAALAPRNNSRARMTRSSSRQRNVHGRTDDKENFVTDARLDAH
IEAYFIRKRASVASVAAAVAPPTTPADSRVTEHSATSNHSWDGSMPKRRN
SRSVIERDHAISQRVSPSLNAKPGSAAVTARQAGLSESCELNKVDANEAV
KQSCEAGTQSSCAEVPSSGKWCDECAGVGLHISALLSELQTQRPVPEAGA
ADMSSSCSGSGAKKGWKSVVTQTVLGDSKSRSSSEKAKLQQEINVLRATV
DFLYKKIERVDGNDSTSATSASSR*

spliced messenger RNA

>Ggra840.t1 ID=Ggra840.t1|Name=Ggra840.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1275bp|location=Sequence derived from alignment at tig00000202_pilon:42692..43966+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCCGTGCAGCCCAAGTCCGACATGCCTCCCCCGCCGCCGCCCGC
GCCCTCCGCCGCCGCCGCCGTGGCGGCGGCGCCTGCGCGCTCGCGCTCCT
CGCGTAAGCTGCCGCGCCCGGGCACCTTCTCGCACGCGCGCTTGCCGCGC
ACGCCGTCCGTGCCGCGCGGCCGCTCGTACCACGGCAAGCCGCTGTCGGC
CGCCGCGCACGCCGCGCAGCAGGGCTACTTTGCGCGCAAGGCCGCCAAGC
TATACGCGGAGCGCAAGAAGGCTGTTTCGGCCGGAGCGCCGGTGGCGGCG
GGCGCCACCGCAGCCGCGCCGGCCGGCTCGCCGCATGGCGACCATGTGGC
AGTGCAGGCTGATATGTCGGCCGCCCTGAAAGCTGCAAACCATAACCAGC
CGCCCGTGGATGTGATCAACATCACCGTGGACGCGCAGGGCGTGAAGATC
GATGAGAACAAGCCGCGGCTGTCTGCTGCGTTGGCGCCGAGGAACAACTC
GCGCGCGCGCATGACGCGATCGAGCTCGCGTCAGAGAAACGTGCACGGCA
GGACGGATGACAAGGAGAACTTTGTGACCGACGCGCGGCTAGACGCGCAC
ATCGAGGCGTACTTCATCCGCAAGCGCGCGTCCGTGGCGTCCGTGGCCGC
GGCGGTGGCGCCGCCGACGACGCCGGCCGACTCACGGGTGACGGAGCACT
CTGCCACGTCCAACCACTCGTGGGATGGCTCCATGCCGAAGCGACGAAAT
AGCCGCAGTGTGATTGAGCGCGACCACGCCATAAGCCAGCGCGTGAGCCC
GTCGCTCAACGCCAAGCCGGGCAGCGCGGCGGTGACGGCGCGGCAGGCGG
GGCTGAGTGAGAGCTGTGAGCTCAACAAGGTGGACGCAAACGAGGCGGTG
AAGCAGAGCTGTGAAGCCGGCACGCAATCATCGTGTGCAGAGGTGCCGAG
CAGTGGAAAGTGGTGCGATGAATGCGCCGGCGTGGGGCTGCACATCTCGG
CGCTGCTGTCCGAACTACAGACGCAACGGCCGGTGCCCGAGGCCGGGGCG
GCGGACATGAGCTCGTCGTGCTCCGGATCGGGCGCCAAGAAGGGGTGGAA
GAGCGTGGTGACACAAACGGTTCTGGGCGATTCCAAGAGCAGGAGCTCGT
CTGAGAAGGCGAAGCTACAGCAAGAAATCAACGTGCTTCGCGCAACGGTG
GACTTCTTGTACAAGAAGATTGAACGTGTGGATGGCAACGATAGCACGTC
GGCTACGTCCGCCTCTTCTCGTTAG

protein sequence of Ggra840.t1

>Ggra840.t1 ID=Ggra840.t1|Name=Ggra840.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=425bp
MAAVQPKSDMPPPPPPAPSAAAAVAAAPARSRSSRKLPRPGTFSHARLPR
TPSVPRGRSYHGKPLSAAAHAAQQGYFARKAAKLYAERKKAVSAGAPVAA
GATAAAPAGSPHGDHVAVQADMSAALKAANHNQPPVDVINITVDAQGVKI
DENKPRLSAALAPRNNSRARMTRSSSRQRNVHGRTDDKENFVTDARLDAH
IEAYFIRKRASVASVAAAVAPPTTPADSRVTEHSATSNHSWDGSMPKRRN
SRSVIERDHAISQRVSPSLNAKPGSAAVTARQAGLSESCELNKVDANEAV
KQSCEAGTQSSCAEVPSSGKWCDECAGVGLHISALLSELQTQRPVPEAGA
ADMSSSCSGSGAKKGWKSVVTQTVLGDSKSRSSSEKAKLQQEINVLRATV
DFLYKKIERVDGNDSTSATSASSR*

mRNA from alignment at tig00000202_pilon:42692..43966+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra840.t1 ID=Ggra840.t1|Name=Ggra840.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1275bp|location=Sequence derived from alignment at tig00000202_pilon:42692..43966+ (Gracilaria gracilis GNS1m male)
ATGGCCGCCGTGCAGCCCAAGTCCGACATGCCTCCCCCGCCGCCGCCCGC
GCCCTCCGCCGCCGCCGCCGTGGCGGCGGCGCCTGCGCGCTCGCGCTCCT
CGCGTAAGCTGCCGCGCCCGGGCACCTTCTCGCACGCGCGCTTGCCGCGC
ACGCCGTCCGTGCCGCGCGGCCGCTCGTACCACGGCAAGCCGCTGTCGGC
CGCCGCGCACGCCGCGCAGCAGGGCTACTTTGCGCGCAAGGCCGCCAAGC
TATACGCGGAGCGCAAGAAGGCTGTTTCGGCCGGAGCGCCGGTGGCGGCG
GGCGCCACCGCAGCCGCGCCGGCCGGCTCGCCGCATGGCGACCATGTGGC
AGTGCAGGCTGATATGTCGGCCGCCCTGAAAGCTGCAAACCATAACCAGC
CGCCCGTGGATGTGATCAACATCACCGTGGACGCGCAGGGCGTGAAGATC
GATGAGAACAAGCCGCGGCTGTCTGCTGCGTTGGCGCCGAGGAACAACTC
GCGCGCGCGCATGACGCGATCGAGCTCGCGTCAGAGAAACGTGCACGGCA
GGACGGATGACAAGGAGAACTTTGTGACCGACGCGCGGCTAGACGCGCAC
ATCGAGGCGTACTTCATCCGCAAGCGCGCGTCCGTGGCGTCCGTGGCCGC
GGCGGTGGCGCCGCCGACGACGCCGGCCGACTCACGGGTGACGGAGCACT
CTGCCACGTCCAACCACTCGTGGGATGGCTCCATGCCGAAGCGACGAAAT
AGCCGCAGTGTGATTGAGCGCGACCACGCCATAAGCCAGCGCGTGAGCCC
GTCGCTCAACGCCAAGCCGGGCAGCGCGGCGGTGACGGCGCGGCAGGCGG
GGCTGAGTGAGAGCTGTGAGCTCAACAAGGTGGACGCAAACGAGGCGGTG
AAGCAGAGCTGTGAAGCCGGCACGCAATCATCGTGTGCAGAGGTGCCGAG
CAGTGGAAAGTGGTGCGATGAATGCGCCGGCGTGGGGCTGCACATCTCGG
CGCTGCTGTCCGAACTACAGACGCAACGGCCGGTGCCCGAGGCCGGGGCG
GCGGACATGAGCTCGTCGTGCTCCGGATCGGGCGCCAAGAAGGGGTGGAA
GAGCGTGGTGACACAAACGGTTCTGGGCGATTCCAAGAGCAGGAGCTCGT
CTGAGAAGGCGAAGCTACAGCAAGAAATCAACGTGCTTCGCGCAACGGTG
GACTTCTTGTACAAGAAGATTGAACGTGTGGATGGCAACGATAGCACGTC
GGCTACGTCCGCCTCTTCTCGTTAG

Coding sequence (CDS) from alignment at tig00000202_pilon:42692..43966+

>Ggra840.t1 ID=Ggra840.t1|Name=Ggra840.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1275bp|location=Sequence derived from alignment at tig00000202_pilon:42692..43966+ (Gracilaria gracilis GNS1m male)
ATGGCCGCCGTGCAGCCCAAGTCCGACATGCCTCCCCCGCCGCCGCCCGC
GCCCTCCGCCGCCGCCGCCGTGGCGGCGGCGCCTGCGCGCTCGCGCTCCT
CGCGTAAGCTGCCGCGCCCGGGCACCTTCTCGCACGCGCGCTTGCCGCGC
ACGCCGTCCGTGCCGCGCGGCCGCTCGTACCACGGCAAGCCGCTGTCGGC
CGCCGCGCACGCCGCGCAGCAGGGCTACTTTGCGCGCAAGGCCGCCAAGC
TATACGCGGAGCGCAAGAAGGCTGTTTCGGCCGGAGCGCCGGTGGCGGCG
GGCGCCACCGCAGCCGCGCCGGCCGGCTCGCCGCATGGCGACCATGTGGC
AGTGCAGGCTGATATGTCGGCCGCCCTGAAAGCTGCAAACCATAACCAGC
CGCCCGTGGATGTGATCAACATCACCGTGGACGCGCAGGGCGTGAAGATC
GATGAGAACAAGCCGCGGCTGTCTGCTGCGTTGGCGCCGAGGAACAACTC
GCGCGCGCGCATGACGCGATCGAGCTCGCGTCAGAGAAACGTGCACGGCA
GGACGGATGACAAGGAGAACTTTGTGACCGACGCGCGGCTAGACGCGCAC
ATCGAGGCGTACTTCATCCGCAAGCGCGCGTCCGTGGCGTCCGTGGCCGC
GGCGGTGGCGCCGCCGACGACGCCGGCCGACTCACGGGTGACGGAGCACT
CTGCCACGTCCAACCACTCGTGGGATGGCTCCATGCCGAAGCGACGAAAT
AGCCGCAGTGTGATTGAGCGCGACCACGCCATAAGCCAGCGCGTGAGCCC
GTCGCTCAACGCCAAGCCGGGCAGCGCGGCGGTGACGGCGCGGCAGGCGG
GGCTGAGTGAGAGCTGTGAGCTCAACAAGGTGGACGCAAACGAGGCGGTG
AAGCAGAGCTGTGAAGCCGGCACGCAATCATCGTGTGCAGAGGTGCCGAG
CAGTGGAAAGTGGTGCGATGAATGCGCCGGCGTGGGGCTGCACATCTCGG
CGCTGCTGTCCGAACTACAGACGCAACGGCCGGTGCCCGAGGCCGGGGCG
GCGGACATGAGCTCGTCGTGCTCCGGATCGGGCGCCAAGAAGGGGTGGAA
GAGCGTGGTGACACAAACGGTTCTGGGCGATTCCAAGAGCAGGAGCTCGT
CTGAGAAGGCGAAGCTACAGCAAGAAATCAACGTGCTTCGCGCAACGGTG
GACTTCTTGTACAAGAAGATTGAACGTGTGGATGGCAACGATAGCACGTC
GGCTACGTCCGCCTCTTCTCGTTAG