Ggra8383.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8383.t1
Unique NameGgra8383.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length196
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:299071..299658 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog57918.XP_004299964.1
PFAMsCSN8_PSD8_EIF3K
Max annot lvl35493|Streptophyta
KEGG koko:K12181
GOsGO:0000338,GO:0001101,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009314,GO:0009416,GO:0009628,GO:0009719,GO:0009725,GO:0009753,GO:0009987,GO:0010033,GO:0010387,GO:0016043,GO:0016787,GO:0019538,GO:0022607,GO:0034622,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050896,GO:0065003,GO:0070011,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901700
Evalue8.93e-18
EggNOG OGsKOG4414@1|root,KOG4414@2759|Eukaryota,37RGB@33090|Viridiplantae,3G7KG@35493|Streptophyta,4JN24@91835|fabids
DescriptionCop9 signalosome complex subunit
COG categoryOT
BRITEko00000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8383Ggra8383Gracilaria gracilis GNS1m malegenetig00000041_pilon 299071..299658 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8383.t1.start1Ggra8383.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 299071..299073 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8383.t1.CDS1Ggra8383.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 299071..299658 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8383.t1.exon1Ggra8383.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 299071..299658 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8383.t1.stop1Ggra8383.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 299656..299658 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8383.t1Ggra8383.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 299071..299658 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8383.t1 ID=Ggra8383.t1|Name=Ggra8383.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=196bp
MSTIAAAVESLDAARVVELCEDAELTAAEKNDVHPFPVFHLLGLLLLEDL
NEARFFWKRLPPLCQENTETKAAWNLAQALWKRDNCEFFQAAEWPHWSKE
AVHVVKELVRRKREAAKLLVERSYSCISLQRAEALLGLDQPALRQLCQAE
EWVLDDDFILISTVKNNHKIPNHAAVQQRELQVLTEQLIKLQTTS*
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spliced messenger RNA

>Ggra8383.t1 ID=Ggra8383.t1|Name=Ggra8383.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=588bp|location=Sequence derived from alignment at tig00000041_pilon:299071..299658+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGACAATCGCTGCGGCCGTAGAATCTTTGGATGCTGCACGAGTAGT
TGAACTCTGCGAGGACGCCGAGTTGACCGCCGCGGAGAAGAACGACGTAC
ACCCCTTTCCCGTTTTCCATCTTCTTGGTCTTTTGCTTCTGGAGGACCTG
AACGAAGCTCGCTTTTTCTGGAAGCGCCTTCCCCCTTTGTGTCAAGAGAA
TACGGAAACCAAAGCCGCCTGGAATCTTGCTCAAGCTCTGTGGAAGCGCG
ACAACTGCGAGTTCTTTCAAGCTGCAGAATGGCCGCACTGGAGCAAAGAA
GCTGTTCATGTAGTTAAAGAGCTAGTGCGACGGAAGAGAGAGGCGGCTAA
ACTACTTGTGGAGCGAAGTTACTCTTGCATTTCTCTGCAGCGCGCTGAGG
CATTACTGGGCCTTGACCAGCCTGCTTTGCGGCAACTATGTCAAGCAGAA
GAATGGGTATTGGACGACGATTTCATTCTCATTAGTACGGTCAAAAACAA
TCATAAGATCCCTAATCACGCTGCCGTACAGCAAAGAGAACTACAGGTAC
TCACTGAACAATTAATCAAACTTCAGACTACGAGCTAG
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protein sequence of Ggra8383.t1

>Ggra8383.t1 ID=Ggra8383.t1|Name=Ggra8383.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=196bp
MSTIAAAVESLDAARVVELCEDAELTAAEKNDVHPFPVFHLLGLLLLEDL
NEARFFWKRLPPLCQENTETKAAWNLAQALWKRDNCEFFQAAEWPHWSKE
AVHVVKELVRRKREAAKLLVERSYSCISLQRAEALLGLDQPALRQLCQAE
EWVLDDDFILISTVKNNHKIPNHAAVQQRELQVLTEQLIKLQTTS*
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mRNA from alignment at tig00000041_pilon:299071..299658+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8383.t1 ID=Ggra8383.t1|Name=Ggra8383.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=588bp|location=Sequence derived from alignment at tig00000041_pilon:299071..299658+ (Gracilaria gracilis GNS1m male)
ATGTCGACAATCGCTGCGGCCGTAGAATCTTTGGATGCTGCACGAGTAGT
TGAACTCTGCGAGGACGCCGAGTTGACCGCCGCGGAGAAGAACGACGTAC
ACCCCTTTCCCGTTTTCCATCTTCTTGGTCTTTTGCTTCTGGAGGACCTG
AACGAAGCTCGCTTTTTCTGGAAGCGCCTTCCCCCTTTGTGTCAAGAGAA
TACGGAAACCAAAGCCGCCTGGAATCTTGCTCAAGCTCTGTGGAAGCGCG
ACAACTGCGAGTTCTTTCAAGCTGCAGAATGGCCGCACTGGAGCAAAGAA
GCTGTTCATGTAGTTAAAGAGCTAGTGCGACGGAAGAGAGAGGCGGCTAA
ACTACTTGTGGAGCGAAGTTACTCTTGCATTTCTCTGCAGCGCGCTGAGG
CATTACTGGGCCTTGACCAGCCTGCTTTGCGGCAACTATGTCAAGCAGAA
GAATGGGTATTGGACGACGATTTCATTCTCATTAGTACGGTCAAAAACAA
TCATAAGATCCCTAATCACGCTGCCGTACAGCAAAGAGAACTACAGGTAC
TCACTGAACAATTAATCAAACTTCAGACTACGAGCTAG
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Coding sequence (CDS) from alignment at tig00000041_pilon:299071..299658+

>Ggra8383.t1 ID=Ggra8383.t1|Name=Ggra8383.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=588bp|location=Sequence derived from alignment at tig00000041_pilon:299071..299658+ (Gracilaria gracilis GNS1m male)
ATGTCGACAATCGCTGCGGCCGTAGAATCTTTGGATGCTGCACGAGTAGT
TGAACTCTGCGAGGACGCCGAGTTGACCGCCGCGGAGAAGAACGACGTAC
ACCCCTTTCCCGTTTTCCATCTTCTTGGTCTTTTGCTTCTGGAGGACCTG
AACGAAGCTCGCTTTTTCTGGAAGCGCCTTCCCCCTTTGTGTCAAGAGAA
TACGGAAACCAAAGCCGCCTGGAATCTTGCTCAAGCTCTGTGGAAGCGCG
ACAACTGCGAGTTCTTTCAAGCTGCAGAATGGCCGCACTGGAGCAAAGAA
GCTGTTCATGTAGTTAAAGAGCTAGTGCGACGGAAGAGAGAGGCGGCTAA
ACTACTTGTGGAGCGAAGTTACTCTTGCATTTCTCTGCAGCGCGCTGAGG
CATTACTGGGCCTTGACCAGCCTGCTTTGCGGCAACTATGTCAAGCAGAA
GAATGGGTATTGGACGACGATTTCATTCTCATTAGTACGGTCAAAAACAA
TCATAAGATCCCTAATCACGCTGCCGTACAGCAAAGAGAACTACAGGTAC
TCACTGAACAATTAATCAAACTTCAGACTACGAGCTAG
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