Ggra8378.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8378.t1
Unique Name	Ggra8378.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	679

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000041_pilon	contig	tig00000041_pilon:281853..283889 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703742.1
Preferred name	EDEM2
PFAMs	Glyco_hydro_47
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01191,ko:K01230,ko:K10084,ko:K10085
KEGG Reaction	R05982,R06722
KEGG Pathway	ko00510,ko00511,ko00513,ko01100,ko04141,map00510,map00511,map00513,map01100,map04141
KEGG Module	M00073,M00074
GOs	GO:0000139,GO:0003674,GO:0003824,GO:0004553,GO:0004559,GO:0004571,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005794,GO:0006464,GO:0006491,GO:0006508,GO:0006511,GO:0006516,GO:0006517,GO:0006807,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009057,GO:0009100,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0010498,GO:0010604,GO:0012505,GO:0015923,GO:0015924,GO:0016020,GO:0016787,GO:0016798,GO:0019222,GO:0019538,GO:0019941,GO:0023052,GO:0030162,GO:0030163,GO:0030246,GO:0030433,GO:0030968,GO:0031090,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031974,GO:0031984,GO:0032268,GO:0032270,GO:0032386,GO:0032388,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0033157,GO:0033554,GO:0034620,GO:0034976,GO:0035966,GO:0035967,GO:0035977,GO:0036211,GO:0036503,GO:0036507,GO:0036508,GO:0036509,GO:0036510,GO:0036511,GO:0036512,GO:0042176,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044322,GO:0044422,GO:0044424,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045732,GO:0045862,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051171,GO:0051173,GO:0051222,GO:0051223,GO:0051246,GO:0051247,GO:0051603,GO:0051716,GO:0060255,GO:0060341,GO:0061136,GO:0065007,GO:0070013,GO:0070201,GO:0070861,GO:0070863,GO:0070887,GO:0071310,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0090316,GO:0097466,GO:0098588,GO:0098791,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901700,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903827,GO:1903829,GO:1904152,GO:1904154,GO:1904292,GO:1904294,GO:1904380,GO:1904382,GO:1904587,GO:1904951,GO:1905897,GO:1905898
Evalue	1.65e-124
EggNOG OGs	KOG2429@1\|root,KOG2429@2759\|Eukaryota
EC	3.2.1.113,3.2.1.24
Description	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
COG category	G
CAZy	GH38,GH47
BRITE	ko00000,ko00001,ko00002,ko01000,ko04091,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8378	Ggra8378	Gracilaria gracilis GNS1m male	gene	tig00000041_pilon 281853..283889 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8378.t1.start1	Ggra8378.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000041_pilon 281853..281855 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8378.t1.CDS1	Ggra8378.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000041_pilon 281853..283889 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8378.t1.exon1	Ggra8378.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000041_pilon 281853..283889 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8378.t1.stop1	Ggra8378.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000041_pilon 283887..283889 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8378.t1	Ggra8378.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000041_pilon 281853..283889 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000041_pilon:281853..283889+
coding sequence from alignment at tig00000041_pilon:281853..283889+

mRNA sequence

>Ggra8378.t1 ID=Ggra8378.t1|Name=Ggra8378.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=679bp
MRARQPAAPPLRFVPLRFVPLRFAPLRFAPLRFAPLRFAPLRFAPLRFAP
LRFAPCALLPLLLLLLLLQLLLAGAARGDMNARPCGAHDARRQTARLLAD
FDHAYLNYKRHAQSHDELRPISCRGADTFGGLNVTLVDTLDTHFVLGRYH
DFVSAAKHVAAHHHFDVNATVSVFETTIRVLGALISAHQLLVEPVPEAAF
VPLLLWPTYDDALLYLAVQLADRLLPAFDTPTRIPFGSVHLQNGVRVNES
RSASTAAAGSLLLEFGTLSRHTHTPYYYQLAFDAMHALYQRAAWTGLVGN
HINIYTGEWIATDSGVGGLIDSFYEYMLKGYVLFGDPRLLEMHQSSYNSV
YKYVRKNQWFLNVDMWTGQTVSTSQSSLSAFYPGLQVLQGHIPHAIETVR
AHYSVWRKYGCLPEGYDVQHDVVTRGQINYPLRPELIESMFYLHWATKDP
TWVAVAESMLHSIEQNTRVKCGFAQVHDVTTGQLDDLMDSFLMSETFKYI
YLIFRGDDHWIRSGRYILTTEAHPLRIPLHKMNFTTTTTTATATTTTSSA
HSTLRYKCPRAPSAERLLPCGYGMQGTDYPVLDPASMRSEDVSDDVKKQV
LELVERRGAAALQLGEVFLDERNAYRLMSLRGNRVVFAKLDEDERRREMT
RLSNRGCSIVRAVDIFAHQCAWKDHSST*

spliced messenger RNA

>Ggra8378.t1 ID=Ggra8378.t1|Name=Ggra8378.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2037bp|location=Sequence derived from alignment at tig00000041_pilon:281853..283889+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGCGCGGCAACCCGCCGCGCCGCCGTTGCGCTTCGTGCCGTTGCG
CTTCGTGCCGTTGCGCTTCGCGCCGTTGCGCTTCGCGCCGTTGCGCTTCG
CGCCGTTGCGCTTCGCGCCGTTGCGCTTCGCGCCGTTGCGCTTCGCGCCG
TTGCGCTTCGCGCCATGCGCgctgctgccgctgctgctgctgctgctgct
gctgcagctgctgctgGCCGgcgcggcgcgcggcgacatgaacgcgcgcc
catgcggcgcgcacgacgcgcggcgACAGACGGCGCGGCTGCTAGCCGAC
TTTGACCACGCGTACCTCAACTACAAGCGGCACGCGCAGTCGCACGACGA
GCTGCGGCCCATTTCGTGCCGCGGCGCCGACACGTTCGGCGGGCTCAACG
TCACGCTGGTGGACACGCTGGACACGCACTTCGTGCTAGGCCGCTACCAC
GACTTTGTGTCCGCCGCCAAGCACGTCGCCGCGCACCACCACTTCGACGT
CAACGCCACCGTGTCCGTGTTCGAGACCACCATCCGCGTGCTGGGCGCGC
TCATCTCCGCGCACCAGCTGCTCGTAGAGCCCGTGCCGGAGGCCGCCTTT
GTGCCGCTGTTGCTGTGGCCCACTTATGACGACGCGCTGCTTTACCTTGC
CGTGCAGCTGGCGGACCGTCTGTTGCCGGCTTTCGACACGCCTACCCGCA
TTCCGTTCGGCTCCGTTCATCTGCAGAACGGCGTGCGTGTCAACGAGTCG
CGCTCCGCGAGCACCGCCGCCGCAGGCTCGCTGCTGCTGGAGTTTGGCAC
GCTGTCGCGACACACCCACACGCCGTACTATTATCAGCTTGCGTTTGACG
CCATGCATGCGCTGTATCAGCGCGCCGCGTGGACCGGCTTGGTGGGCAAT
CATATCAACATCTACACCGGCGAGTGGATCGCCACTGATTCGGGCGTAGG
CGGACTCATCGACTCGTTTTACGAGTACATGCTCAAGGGCTATGTACTCT
TCGGCGACCCGAGGCTGTTGGAGATGCATCAGAGCAGCTACAACTCCGTG
TACAAGTACGTGCGCAAGAATCAGTGGTTTCTCAACGTTGACATGTGGAC
GGGGCAAACCGTGTCGACGTCGCAGTCCTCCCTGTCCGCCTTCTATCCTG
GCTTGCAGGTGTTGCAGGGCCACATTCCGCACGCCATCGAGACTGTGCGC
GCGCATTATAGCGTGTGGCGAAAGTATGGCTGTCTGCCGGAGGGCTATGA
TGTGCAGCACGACGTGGTCACGCGCGGCCAGATCAACTATCCACTCCGCC
CGGAATTGATCGAGAGTATGTTCTACCTGCACTGGGCCACAAAGGACCCC
ACTTGGGTGGCTGTTGCCGAATCTATGCTGCACAGTATTGAGCAGAACAC
CCGCGTCAAGTGTGGCTTTGCTCAGGTGCATGATGTCACCACCGGCCAGC
TGGACGACTTGATGGACAGCTTTCTCATGAGCGAGACCTTCAAGTACATC
TACCTCATCTTCCGCGGCGATGATCACTGGATACGAAGTGGTAGGTATAT
TCTTACGACTGAGGCACACCCGTTACGAATTCCGCTGCATAAAATGAACT
TTaccacaaccaccactaccgccaccgccacaaccaccaccTCAAGCGCA
CATTCTACGCTCCGTTATAAATGCCCACGTGCGCCAAGTGCGGAGCGACT
GCTACCGTGCGGATATGGCATGCAAGGTACTGACTATCCTGTACTGGACC
CCGCGTCCATGAGGTCGGAGGACGTCTCGGACGACGTGAAGAAGCAAGTG
CTTGAGCTGGTGGAAAGGCGCGGTGCTGCCGCGCTGCAGCTGGGAGAAGT
GTTTTTGGATGAACGGAACGCGTACCGGTTGATGAGCCTGCGTGGCAATC
GCGTCGTGTTCGCAAAGCTGGATGAAGACGAAAGGCGACGGGAGATGACC
CGGCTTTCGAATAGAGGCTGCTCCATTGTGCGCGCAGTTGACATTTTTGC
TCATCAATGTGCATGGAAAGATCACTCATCAACGTAA

protein sequence of Ggra8378.t1

>Ggra8378.t1 ID=Ggra8378.t1|Name=Ggra8378.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=679bp
MRARQPAAPPLRFVPLRFVPLRFAPLRFAPLRFAPLRFAPLRFAPLRFAP
LRFAPCALLPLLLLLLLLQLLLAGAARGDMNARPCGAHDARRQTARLLAD
FDHAYLNYKRHAQSHDELRPISCRGADTFGGLNVTLVDTLDTHFVLGRYH
DFVSAAKHVAAHHHFDVNATVSVFETTIRVLGALISAHQLLVEPVPEAAF
VPLLLWPTYDDALLYLAVQLADRLLPAFDTPTRIPFGSVHLQNGVRVNES
RSASTAAAGSLLLEFGTLSRHTHTPYYYQLAFDAMHALYQRAAWTGLVGN
HINIYTGEWIATDSGVGGLIDSFYEYMLKGYVLFGDPRLLEMHQSSYNSV
YKYVRKNQWFLNVDMWTGQTVSTSQSSLSAFYPGLQVLQGHIPHAIETVR
AHYSVWRKYGCLPEGYDVQHDVVTRGQINYPLRPELIESMFYLHWATKDP
TWVAVAESMLHSIEQNTRVKCGFAQVHDVTTGQLDDLMDSFLMSETFKYI
YLIFRGDDHWIRSGRYILTTEAHPLRIPLHKMNFTTTTTTATATTTTSSA
HSTLRYKCPRAPSAERLLPCGYGMQGTDYPVLDPASMRSEDVSDDVKKQV
LELVERRGAAALQLGEVFLDERNAYRLMSLRGNRVVFAKLDEDERRREMT
RLSNRGCSIVRAVDIFAHQCAWKDHSST*

mRNA from alignment at tig00000041_pilon:281853..283889+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8378.t1 ID=Ggra8378.t1|Name=Ggra8378.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2037bp|location=Sequence derived from alignment at tig00000041_pilon:281853..283889+ (Gracilaria gracilis GNS1m male)
ATGCGCGCGCGGCAACCCGCCGCGCCGCCGTTGCGCTTCGTGCCGTTGCG
CTTCGTGCCGTTGCGCTTCGCGCCGTTGCGCTTCGCGCCGTTGCGCTTCG
CGCCGTTGCGCTTCGCGCCGTTGCGCTTCGCGCCGTTGCGCTTCGCGCCG
TTGCGCTTCGCGCCATGCGCgctgctgccgctgctgctgctgctgctgct
gctgcagctgctgctgGCCGgcgcggcgcgcggcgacatgaacgcgcgcc
catgcggcgcgcacgacgcgcggcgACAGACGGCGCGGCTGCTAGCCGAC
TTTGACCACGCGTACCTCAACTACAAGCGGCACGCGCAGTCGCACGACGA
GCTGCGGCCCATTTCGTGCCGCGGCGCCGACACGTTCGGCGGGCTCAACG
TCACGCTGGTGGACACGCTGGACACGCACTTCGTGCTAGGCCGCTACCAC
GACTTTGTGTCCGCCGCCAAGCACGTCGCCGCGCACCACCACTTCGACGT
CAACGCCACCGTGTCCGTGTTCGAGACCACCATCCGCGTGCTGGGCGCGC
TCATCTCCGCGCACCAGCTGCTCGTAGAGCCCGTGCCGGAGGCCGCCTTT
GTGCCGCTGTTGCTGTGGCCCACTTATGACGACGCGCTGCTTTACCTTGC
CGTGCAGCTGGCGGACCGTCTGTTGCCGGCTTTCGACACGCCTACCCGCA
TTCCGTTCGGCTCCGTTCATCTGCAGAACGGCGTGCGTGTCAACGAGTCG
CGCTCCGCGAGCACCGCCGCCGCAGGCTCGCTGCTGCTGGAGTTTGGCAC
GCTGTCGCGACACACCCACACGCCGTACTATTATCAGCTTGCGTTTGACG
CCATGCATGCGCTGTATCAGCGCGCCGCGTGGACCGGCTTGGTGGGCAAT
CATATCAACATCTACACCGGCGAGTGGATCGCCACTGATTCGGGCGTAGG
CGGACTCATCGACTCGTTTTACGAGTACATGCTCAAGGGCTATGTACTCT
TCGGCGACCCGAGGCTGTTGGAGATGCATCAGAGCAGCTACAACTCCGTG
TACAAGTACGTGCGCAAGAATCAGTGGTTTCTCAACGTTGACATGTGGAC
GGGGCAAACCGTGTCGACGTCGCAGTCCTCCCTGTCCGCCTTCTATCCTG
GCTTGCAGGTGTTGCAGGGCCACATTCCGCACGCCATCGAGACTGTGCGC
GCGCATTATAGCGTGTGGCGAAAGTATGGCTGTCTGCCGGAGGGCTATGA
TGTGCAGCACGACGTGGTCACGCGCGGCCAGATCAACTATCCACTCCGCC
CGGAATTGATCGAGAGTATGTTCTACCTGCACTGGGCCACAAAGGACCCC
ACTTGGGTGGCTGTTGCCGAATCTATGCTGCACAGTATTGAGCAGAACAC
CCGCGTCAAGTGTGGCTTTGCTCAGGTGCATGATGTCACCACCGGCCAGC
TGGACGACTTGATGGACAGCTTTCTCATGAGCGAGACCTTCAAGTACATC
TACCTCATCTTCCGCGGCGATGATCACTGGATACGAAGTGGTAGGTATAT
TCTTACGACTGAGGCACACCCGTTACGAATTCCGCTGCATAAAATGAACT
TTaccacaaccaccactaccgccaccgccacaaccaccaccTCAAGCGCA
CATTCTACGCTCCGTTATAAATGCCCACGTGCGCCAAGTGCGGAGCGACT
GCTACCGTGCGGATATGGCATGCAAGGTACTGACTATCCTGTACTGGACC
CCGCGTCCATGAGGTCGGAGGACGTCTCGGACGACGTGAAGAAGCAAGTG
CTTGAGCTGGTGGAAAGGCGCGGTGCTGCCGCGCTGCAGCTGGGAGAAGT
GTTTTTGGATGAACGGAACGCGTACCGGTTGATGAGCCTGCGTGGCAATC
GCGTCGTGTTCGCAAAGCTGGATGAAGACGAAAGGCGACGGGAGATGACC
CGGCTTTCGAATAGAGGCTGCTCCATTGTGCGCGCAGTTGACATTTTTGC
TCATCAATGTGCATGGAAAGATCACTCATCAACGTAA

Coding sequence (CDS) from alignment at tig00000041_pilon:281853..283889+

>Ggra8378.t1 ID=Ggra8378.t1|Name=Ggra8378.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2037bp|location=Sequence derived from alignment at tig00000041_pilon:281853..283889+ (Gracilaria gracilis GNS1m male)
ATGCGCGCGCGGCAACCCGCCGCGCCGCCGTTGCGCTTCGTGCCGTTGCG
CTTCGTGCCGTTGCGCTTCGCGCCGTTGCGCTTCGCGCCGTTGCGCTTCG
CGCCGTTGCGCTTCGCGCCGTTGCGCTTCGCGCCGTTGCGCTTCGCGCCG
TTGCGCTTCGCGCCATGCGCgctgctgccgctgctgctgctgctgctgct
gctgcagctgctgctgGCCGgcgcggcgcgcggcgacatgaacgcgcgcc
catgcggcgcgcacgacgcgcggcgACAGACGGCGCGGCTGCTAGCCGAC
TTTGACCACGCGTACCTCAACTACAAGCGGCACGCGCAGTCGCACGACGA
GCTGCGGCCCATTTCGTGCCGCGGCGCCGACACGTTCGGCGGGCTCAACG
TCACGCTGGTGGACACGCTGGACACGCACTTCGTGCTAGGCCGCTACCAC
GACTTTGTGTCCGCCGCCAAGCACGTCGCCGCGCACCACCACTTCGACGT
CAACGCCACCGTGTCCGTGTTCGAGACCACCATCCGCGTGCTGGGCGCGC
TCATCTCCGCGCACCAGCTGCTCGTAGAGCCCGTGCCGGAGGCCGCCTTT
GTGCCGCTGTTGCTGTGGCCCACTTATGACGACGCGCTGCTTTACCTTGC
CGTGCAGCTGGCGGACCGTCTGTTGCCGGCTTTCGACACGCCTACCCGCA
TTCCGTTCGGCTCCGTTCATCTGCAGAACGGCGTGCGTGTCAACGAGTCG
CGCTCCGCGAGCACCGCCGCCGCAGGCTCGCTGCTGCTGGAGTTTGGCAC
GCTGTCGCGACACACCCACACGCCGTACTATTATCAGCTTGCGTTTGACG
CCATGCATGCGCTGTATCAGCGCGCCGCGTGGACCGGCTTGGTGGGCAAT
CATATCAACATCTACACCGGCGAGTGGATCGCCACTGATTCGGGCGTAGG
CGGACTCATCGACTCGTTTTACGAGTACATGCTCAAGGGCTATGTACTCT
TCGGCGACCCGAGGCTGTTGGAGATGCATCAGAGCAGCTACAACTCCGTG
TACAAGTACGTGCGCAAGAATCAGTGGTTTCTCAACGTTGACATGTGGAC
GGGGCAAACCGTGTCGACGTCGCAGTCCTCCCTGTCCGCCTTCTATCCTG
GCTTGCAGGTGTTGCAGGGCCACATTCCGCACGCCATCGAGACTGTGCGC
GCGCATTATAGCGTGTGGCGAAAGTATGGCTGTCTGCCGGAGGGCTATGA
TGTGCAGCACGACGTGGTCACGCGCGGCCAGATCAACTATCCACTCCGCC
CGGAATTGATCGAGAGTATGTTCTACCTGCACTGGGCCACAAAGGACCCC
ACTTGGGTGGCTGTTGCCGAATCTATGCTGCACAGTATTGAGCAGAACAC
CCGCGTCAAGTGTGGCTTTGCTCAGGTGCATGATGTCACCACCGGCCAGC
TGGACGACTTGATGGACAGCTTTCTCATGAGCGAGACCTTCAAGTACATC
TACCTCATCTTCCGCGGCGATGATCACTGGATACGAAGTGGTAGGTATAT
TCTTACGACTGAGGCACACCCGTTACGAATTCCGCTGCATAAAATGAACT
TTaccacaaccaccactaccgccaccgccacaaccaccaccTCAAGCGCA
CATTCTACGCTCCGTTATAAATGCCCACGTGCGCCAAGTGCGGAGCGACT
GCTACCGTGCGGATATGGCATGCAAGGTACTGACTATCCTGTACTGGACC
CCGCGTCCATGAGGTCGGAGGACGTCTCGGACGACGTGAAGAAGCAAGTG
CTTGAGCTGGTGGAAAGGCGCGGTGCTGCCGCGCTGCAGCTGGGAGAAGT
GTTTTTGGATGAACGGAACGCGTACCGGTTGATGAGCCTGCGTGGCAATC
GCGTCGTGTTCGCAAAGCTGGATGAAGACGAAAGGCGACGGGAGATGACC
CGGCTTTCGAATAGAGGCTGCTCCATTGTGCGCGCAGTTGACATTTTTGC
TCATCAATGTGCATGGAAAGATCACTCATCAACGTAA