Ggra8348.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8348.t1
Unique Name	Ggra8348.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	588

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000041_pilon	contig	tig00000041_pilon:175013..176776 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D7G595
PFAMs	p450
Max annot lvl	2759\|Eukaryota
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
Evalue	2.21e-200
EggNOG OGs	COG2124@1\|root,KOG0157@2759\|Eukaryota
Description	iron ion binding
COG category	Q

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8348	Ggra8348	Gracilaria gracilis GNS1m male	gene	tig00000041_pilon 175013..176776 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8348.t1.start1	Ggra8348.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000041_pilon 175013..175015 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8348.t1.CDS1	Ggra8348.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000041_pilon 175013..176776 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8348.t1.exon1	Ggra8348.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000041_pilon 175013..176776 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8348.t1.stop1	Ggra8348.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000041_pilon 176774..176776 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8348.t1	Ggra8348.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000041_pilon 175013..176776 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000041_pilon:175013..176776+
coding sequence from alignment at tig00000041_pilon:175013..176776+

mRNA sequence

>Ggra8348.t1 ID=Ggra8348.t1|Name=Ggra8348.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=588bp
MSAFVPAAFPARVAGARRSTALCVQRTRRRRRFCAALVSPPSSPSSSEPP
APLTLRDTVDLWVDNYLQTYGDRPCINDAPSAEGDTTYFIGGEPFFVALH
RSFQTYGPIYKLCFGPKIFYVVQDPIIARSILKENYILYDKGVLAEVLDE
IMGKGLIPADYTTWKIRRRAIVPGFHTMWLKHMTSMFGACTQTLCDKLQR
IDGAHVMDMETEYSSLALDIIGKAVFNFEFNSITSESPIIKAVYRTLKET
EHRSMSLIPYWKIPGAKALVPRLRAFYSDMKLINETLNTLILSAKRSATA
QDLTELENRDYENVSDPSLLRFLVELRGEQTTNQQLRDDLMTLLIAGHET
TAAVLTWTTVELTKHPEMVRRAREEIDAVVGDDYPTYEHVQRLSYLRRIV
AESLRLYPAPPVLIRRLLADTTLPKGAAAKETPLRRGTDIFINVYSLHRS
PDLWDNPDTFDPDRWLRPKQNPGVKGWRGYSPAPGLEDGSPLYPTELHTD
FAFLPFGGGSRKCVGDHFAILESVVALAMIIRRFDFEFANPSEDVQMTTG
ATIHTKNGLNMRLCKRKMRDASAHTKAEKTGVEISAM*

spliced messenger RNA

>Ggra8348.t1 ID=Ggra8348.t1|Name=Ggra8348.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1764bp|location=Sequence derived from alignment at tig00000041_pilon:175013..176776+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCGTTTGTCCCTGCTGCATTCCCTGCCCGCGTTGCTGGTGCGCG
TCGTTCCACCGCCCTTTGTGTTCAACGTACTCGTCGTCGGCGACGGTTTT
GTGCCGCTTTGGTGTCGCCACCGTCGTCGCCTAGCTCTTCGGAGCCGCCG
GCGCCGCTCACGCTGCGCGATACCGTTGATCTTTGGGTCGACAATTATCT
GCAGACGTACGGAGATCGCCCCTGTATCAATGACGCCCCGTCCGCCGAGG
GTGATACCACCTACTTTATCGGCGGTGAACCGTTCTTCGTCGCATTGCAT
CGCTCCTTTCAGACCTATGGCCCCATTTACAAGCTCTGTTTCGGGCCCAA
GATCTTCTATGTCGTACAGGATCCGATTATTGCGCGCAGCATTCTCAAGG
AGAATTATATCCTGTATGACAAGGGTGTGCTGGCGGAGGTGCTGGATGAG
ATAATGGGCAAGGGACTCATTCCTGCCGACTATACCACTTGGAAGATCCG
CCGACGAGCCATAGTGCCCGGCTTTCACACTATGTGGTTGAAACACATGA
CCTCCATGTTCGGCGCCTGCACGCAAACGCTCTGTGACAAGCTTCAACGT
ATCGACGGCGCGCATGTTATGGACATGGAGACCGAGTACAGCAGTCTCGC
GCTCGATATCATCGGCAAGGCCGTCTTTAATTTTGAATTCAACAGCATCA
CCTCCGAAAGCCCCATCATCAAAGCCGTGTACCGTACGCTCAAAGAAACC
GAGCATCGCAGCATGAGTTTAATTCCCTATTGGAAAATCCCCGGCGCAAA
AGCCTTGGTGCCGCGTCTACGCGCGTTTTACAGCGATATGAAACTCATCA
ACGAAACGCTTAATACGCTTATTCTCAGTGCTAAACGCTCTGCCACAGCG
CAGGACCTCACCGAATTGGAAAACCGCGATTATGAGAATGTTTCCGACCC
TTCCTTGCTGCGTTTCCTTGTCGAATTGCGTGGTGAACAGACCACCAATC
AACAGCTCAGGGATGATTTGATGACGCTTCTCATTGCGGGCCATGAAACA
ACCGCAGCAGTGCTCACATGGACCACTGTCGAGCTCACAAAGCACCCCGA
AATGGTTCGGAGAGCTCGAGAGGAGATTGACGCCGTGGTCGGAGATGATT
ACCCCACTTATGAACATGTGCAACGATTATCATACTTGCGTCGCATTGTG
GCGGAAAGCTTACGTTTATATCCTGCTCCACCTGTGCTCATACGCCGACT
GCTGGCAGATACCACACTGCCAAAAGGTGCAGCTGCAAAGGAGACCCCCC
TGAGACGTGGTACGGACATATTCATCAACGTTTACTCGCTGCATAGATCA
CCGGACCTGTGGGACAACCCGGATACCTTCGACCCTGATCGCTGGCTCAG
ACCAAAACAGAATCCTGGCGTAAAAGGCTGGAGAGGCTACAGCCCAGCTC
CAGGTTTGGAAGATGGTAGTCCGCTGTACCCCACTGAGCTCCATACCGAC
TTTGCCTTCCTACCGTTTGGAGGCGGCAGCCGTAAGTGCGTGGGGGATCA
TTTTGCCATACTGGAGTCTGTCGTTGCGCTAGCGATGATCATTCGGCGCT
TTGATTTTGAGTTTGCCAATCCGTCGGAGGATGTGCAAATGACGACCGGT
GCTACAATCCACACAAAGAATGGACTCAACATGCGACTGTGCAAGCGGAA
GATGCGTGACGCAAGCGCGCACACAAAGGCGGAGAAGACAGGCGTCGAAA
TCTCTGCCATGTAA

protein sequence of Ggra8348.t1

>Ggra8348.t1 ID=Ggra8348.t1|Name=Ggra8348.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=588bp
MSAFVPAAFPARVAGARRSTALCVQRTRRRRRFCAALVSPPSSPSSSEPP
APLTLRDTVDLWVDNYLQTYGDRPCINDAPSAEGDTTYFIGGEPFFVALH
RSFQTYGPIYKLCFGPKIFYVVQDPIIARSILKENYILYDKGVLAEVLDE
IMGKGLIPADYTTWKIRRRAIVPGFHTMWLKHMTSMFGACTQTLCDKLQR
IDGAHVMDMETEYSSLALDIIGKAVFNFEFNSITSESPIIKAVYRTLKET
EHRSMSLIPYWKIPGAKALVPRLRAFYSDMKLINETLNTLILSAKRSATA
QDLTELENRDYENVSDPSLLRFLVELRGEQTTNQQLRDDLMTLLIAGHET
TAAVLTWTTVELTKHPEMVRRAREEIDAVVGDDYPTYEHVQRLSYLRRIV
AESLRLYPAPPVLIRRLLADTTLPKGAAAKETPLRRGTDIFINVYSLHRS
PDLWDNPDTFDPDRWLRPKQNPGVKGWRGYSPAPGLEDGSPLYPTELHTD
FAFLPFGGGSRKCVGDHFAILESVVALAMIIRRFDFEFANPSEDVQMTTG
ATIHTKNGLNMRLCKRKMRDASAHTKAEKTGVEISAM*

mRNA from alignment at tig00000041_pilon:175013..176776+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8348.t1 ID=Ggra8348.t1|Name=Ggra8348.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1764bp|location=Sequence derived from alignment at tig00000041_pilon:175013..176776+ (Gracilaria gracilis GNS1m male)
ATGTCTGCGTTTGTCCCTGCTGCATTCCCTGCCCGCGTTGCTGGTGCGCG
TCGTTCCACCGCCCTTTGTGTTCAACGTACTCGTCGTCGGCGACGGTTTT
GTGCCGCTTTGGTGTCGCCACCGTCGTCGCCTAGCTCTTCGGAGCCGCCG
GCGCCGCTCACGCTGCGCGATACCGTTGATCTTTGGGTCGACAATTATCT
GCAGACGTACGGAGATCGCCCCTGTATCAATGACGCCCCGTCCGCCGAGG
GTGATACCACCTACTTTATCGGCGGTGAACCGTTCTTCGTCGCATTGCAT
CGCTCCTTTCAGACCTATGGCCCCATTTACAAGCTCTGTTTCGGGCCCAA
GATCTTCTATGTCGTACAGGATCCGATTATTGCGCGCAGCATTCTCAAGG
AGAATTATATCCTGTATGACAAGGGTGTGCTGGCGGAGGTGCTGGATGAG
ATAATGGGCAAGGGACTCATTCCTGCCGACTATACCACTTGGAAGATCCG
CCGACGAGCCATAGTGCCCGGCTTTCACACTATGTGGTTGAAACACATGA
CCTCCATGTTCGGCGCCTGCACGCAAACGCTCTGTGACAAGCTTCAACGT
ATCGACGGCGCGCATGTTATGGACATGGAGACCGAGTACAGCAGTCTCGC
GCTCGATATCATCGGCAAGGCCGTCTTTAATTTTGAATTCAACAGCATCA
CCTCCGAAAGCCCCATCATCAAAGCCGTGTACCGTACGCTCAAAGAAACC
GAGCATCGCAGCATGAGTTTAATTCCCTATTGGAAAATCCCCGGCGCAAA
AGCCTTGGTGCCGCGTCTACGCGCGTTTTACAGCGATATGAAACTCATCA
ACGAAACGCTTAATACGCTTATTCTCAGTGCTAAACGCTCTGCCACAGCG
CAGGACCTCACCGAATTGGAAAACCGCGATTATGAGAATGTTTCCGACCC
TTCCTTGCTGCGTTTCCTTGTCGAATTGCGTGGTGAACAGACCACCAATC
AACAGCTCAGGGATGATTTGATGACGCTTCTCATTGCGGGCCATGAAACA
ACCGCAGCAGTGCTCACATGGACCACTGTCGAGCTCACAAAGCACCCCGA
AATGGTTCGGAGAGCTCGAGAGGAGATTGACGCCGTGGTCGGAGATGATT
ACCCCACTTATGAACATGTGCAACGATTATCATACTTGCGTCGCATTGTG
GCGGAAAGCTTACGTTTATATCCTGCTCCACCTGTGCTCATACGCCGACT
GCTGGCAGATACCACACTGCCAAAAGGTGCAGCTGCAAAGGAGACCCCCC
TGAGACGTGGTACGGACATATTCATCAACGTTTACTCGCTGCATAGATCA
CCGGACCTGTGGGACAACCCGGATACCTTCGACCCTGATCGCTGGCTCAG
ACCAAAACAGAATCCTGGCGTAAAAGGCTGGAGAGGCTACAGCCCAGCTC
CAGGTTTGGAAGATGGTAGTCCGCTGTACCCCACTGAGCTCCATACCGAC
TTTGCCTTCCTACCGTTTGGAGGCGGCAGCCGTAAGTGCGTGGGGGATCA
TTTTGCCATACTGGAGTCTGTCGTTGCGCTAGCGATGATCATTCGGCGCT
TTGATTTTGAGTTTGCCAATCCGTCGGAGGATGTGCAAATGACGACCGGT
GCTACAATCCACACAAAGAATGGACTCAACATGCGACTGTGCAAGCGGAA
GATGCGTGACGCAAGCGCGCACACAAAGGCGGAGAAGACAGGCGTCGAAA
TCTCTGCCATGTAA

Coding sequence (CDS) from alignment at tig00000041_pilon:175013..176776+

>Ggra8348.t1 ID=Ggra8348.t1|Name=Ggra8348.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1764bp|location=Sequence derived from alignment at tig00000041_pilon:175013..176776+ (Gracilaria gracilis GNS1m male)
ATGTCTGCGTTTGTCCCTGCTGCATTCCCTGCCCGCGTTGCTGGTGCGCG
TCGTTCCACCGCCCTTTGTGTTCAACGTACTCGTCGTCGGCGACGGTTTT
GTGCCGCTTTGGTGTCGCCACCGTCGTCGCCTAGCTCTTCGGAGCCGCCG
GCGCCGCTCACGCTGCGCGATACCGTTGATCTTTGGGTCGACAATTATCT
GCAGACGTACGGAGATCGCCCCTGTATCAATGACGCCCCGTCCGCCGAGG
GTGATACCACCTACTTTATCGGCGGTGAACCGTTCTTCGTCGCATTGCAT
CGCTCCTTTCAGACCTATGGCCCCATTTACAAGCTCTGTTTCGGGCCCAA
GATCTTCTATGTCGTACAGGATCCGATTATTGCGCGCAGCATTCTCAAGG
AGAATTATATCCTGTATGACAAGGGTGTGCTGGCGGAGGTGCTGGATGAG
ATAATGGGCAAGGGACTCATTCCTGCCGACTATACCACTTGGAAGATCCG
CCGACGAGCCATAGTGCCCGGCTTTCACACTATGTGGTTGAAACACATGA
CCTCCATGTTCGGCGCCTGCACGCAAACGCTCTGTGACAAGCTTCAACGT
ATCGACGGCGCGCATGTTATGGACATGGAGACCGAGTACAGCAGTCTCGC
GCTCGATATCATCGGCAAGGCCGTCTTTAATTTTGAATTCAACAGCATCA
CCTCCGAAAGCCCCATCATCAAAGCCGTGTACCGTACGCTCAAAGAAACC
GAGCATCGCAGCATGAGTTTAATTCCCTATTGGAAAATCCCCGGCGCAAA
AGCCTTGGTGCCGCGTCTACGCGCGTTTTACAGCGATATGAAACTCATCA
ACGAAACGCTTAATACGCTTATTCTCAGTGCTAAACGCTCTGCCACAGCG
CAGGACCTCACCGAATTGGAAAACCGCGATTATGAGAATGTTTCCGACCC
TTCCTTGCTGCGTTTCCTTGTCGAATTGCGTGGTGAACAGACCACCAATC
AACAGCTCAGGGATGATTTGATGACGCTTCTCATTGCGGGCCATGAAACA
ACCGCAGCAGTGCTCACATGGACCACTGTCGAGCTCACAAAGCACCCCGA
AATGGTTCGGAGAGCTCGAGAGGAGATTGACGCCGTGGTCGGAGATGATT
ACCCCACTTATGAACATGTGCAACGATTATCATACTTGCGTCGCATTGTG
GCGGAAAGCTTACGTTTATATCCTGCTCCACCTGTGCTCATACGCCGACT
GCTGGCAGATACCACACTGCCAAAAGGTGCAGCTGCAAAGGAGACCCCCC
TGAGACGTGGTACGGACATATTCATCAACGTTTACTCGCTGCATAGATCA
CCGGACCTGTGGGACAACCCGGATACCTTCGACCCTGATCGCTGGCTCAG
ACCAAAACAGAATCCTGGCGTAAAAGGCTGGAGAGGCTACAGCCCAGCTC
CAGGTTTGGAAGATGGTAGTCCGCTGTACCCCACTGAGCTCCATACCGAC
TTTGCCTTCCTACCGTTTGGAGGCGGCAGCCGTAAGTGCGTGGGGGATCA
TTTTGCCATACTGGAGTCTGTCGTTGCGCTAGCGATGATCATTCGGCGCT
TTGATTTTGAGTTTGCCAATCCGTCGGAGGATGTGCAAATGACGACCGGT
GCTACAATCCACACAAAGAATGGACTCAACATGCGACTGTGCAAGCGGAA
GATGCGTGACGCAAGCGCGCACACAAAGGCGGAGAAGACAGGCGTCGAAA
TCTCTGCCATGTAA