Ggra8312.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8312.t1
Unique NameGgra8312.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length402
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000958_piloncontigtig00000958_pilon:146107..148533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMJ015CT
PFAMsMetallophos
Max annot lvl2759|Eukaryota
Evalue1.22e-71
EggNOG OGsCOG0639@1|root,KOG0374@2759|Eukaryota
Descriptionphosphoprotein phosphatase activity
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8312Ggra8312Gracilaria gracilis GNS1m malegenetig00000958_pilon 146107..148533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8312.t1Ggra8312.t1Gracilaria gracilis GNS1m malepolypeptidetig00000958_pilon 146107..148533 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8312.t1.start1Ggra8312.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000958_pilon 146107..146109 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8312.t1.CDS1Ggra8312.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000958_pilon 146107..146329 +
Ggra8312.t1.CDS2Ggra8312.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000958_pilon 147551..148533 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8312.t1.exon1Ggra8312.t1.exon1Gracilaria gracilis GNS1m maleexontig00000958_pilon 146107..146329 +
Ggra8312.t1.exon2Ggra8312.t1.exon2Gracilaria gracilis GNS1m maleexontig00000958_pilon 147551..148533 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8312.t1.intron1Ggra8312.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000958_pilon 146330..147550 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8312.t1.stop1Ggra8312.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000958_pilon 148531..148533 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8312.t1 ID=Ggra8312.t1|Name=Ggra8312.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=402bp
MTAPEKHDIQMEAEAVISIVADSGELAVSASHEAEEVYRASRQLAELQQE
IKNASNNEKVEQALVTAQQNANDSAEARALPPNETLPSLPPVAARFPGAK
RIVAVGDVHGDVKAFRTALRSANILDKNDNWIGGETVLVQVGDVLDRGNH
ERAVYRILFKLQDSAPQSGGAVHILLGNHEVMNARMDFRYVSRAGFDDFR
GARGGVRFPPYLTQFIRSLEPFKRPRAAALAPGGSLAVELAHRARVAVIV
GENVFVHAGLKKEHLMDNITARKGSDNAINGLNERTSTFLMGMGSLPQAL
RGSGSPIWMRDYSRPPRPDPKSEMCMMLKDTLQFLRAKRMIVGHTPQLQG
INSACDGRVWRIDTGMSAIYGGVPEAFEINGNGQVQVYTPKGVVDGSERL
R*
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spliced messenger RNA

>Ggra8312.t1 ID=Ggra8312.t1|Name=Ggra8312.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1206bp|location=Sequence derived from alignment at tig00000958_pilon:146107..148533+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGCACCAGAGAAGCATGACATTCAAATGGAAGCGGAAGCTGTGAT
ATCGATAGTTGCCGATTCCGGTGAGCTCGCTGTGAGCGCAAGTCATGAAG
CTGAAGAGGTCTACCGGGCAAGCCGTCAGCTTGCCGAACTACAACAAGAG
ATAAAGAATGCTTCAAACAATGAGAAAGTCGAACAGGCACTTGTTACTGC
ACAGCAAAACGCAAACGATAGCGCTGAAGCCCGAGCTCTCCCGCCAAACG
AGACGCTCCCTTCGTTACCGCCGGTGGCAGCTCGGTTTCCGGGCGCCAAG
CGTATCGTAGCCGTTGGCGATGTTCATGGGGACGTCAAGGCCTTTCGCAC
CGCCTTGCGTTCCGCCAATATACTCGACAAGAATGACAACTGGATTGGAG
GCGAAACCGTGCTGGTGCAGGTAGGCGATGTCTTAGATCGTGGAAATCAT
GAACGTGCGGTGTATCGTATCTTGTTCAAGTTACAAGACTCTGCACCGCA
ATCAGGCGGAGCCGTTCACATACTTCTCGGTAACCATGAAGTAATGAATG
CGCGTATGGACTTTCGATACGTTTCGCGGGCTGGGTTTGACGATTTTCGC
GGAGCTCGTGGTGGTGTTAGGTTTCCACCGTATCTAACGCAGTTCATTCG
CTCGTTGGAGCCTTTCAAAAGGCCCCGCGCCGCGGCACTCGCCCCGGGAG
GATCCTTAGCTGTTGAACTGGCACATCGTGCTCGTGTAGCGGTTATAGTC
GGTGAGAACGTGTTTGTTCATGCAGGGCTTAAAAAGGAGCATCTTATGGA
TAACATAACAGCTCGCAAGGGATCGGATAACGCCATCAACGGACTAAACG
AGCGCACGAGCACATTTTTGATGGGCATGGGCTCTCTTCCACAGGCTCTA
CGCGGAAGCGGCAGTCCAATATGGATGCGGGATTACTCACGTCCTCCAAG
ACCAGACCCGAAAAGCGAGATGTGCATGATGCTGAAGGATACGCTTCAGT
TTTTGCGTGCAAAGCGCATGATTGTTGGACATACACCACAATTGCAGGGG
ATTAACTCGGCTTGTGATGGAAGAGTGTGGAGAATTGACACTGGTATGAG
TGCTATCTACGGTGGTGTTCCAGAAGCCTTTGAGATCAATGGCAATGGGC
AAGTTCAAGTATATACCCCCAAAGGGGTGGTGGATGGTTCTGAGCGTCTT
AGGTGA
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protein sequence of Ggra8312.t1

>Ggra8312.t1 ID=Ggra8312.t1|Name=Ggra8312.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=402bp
MTAPEKHDIQMEAEAVISIVADSGELAVSASHEAEEVYRASRQLAELQQE
IKNASNNEKVEQALVTAQQNANDSAEARALPPNETLPSLPPVAARFPGAK
RIVAVGDVHGDVKAFRTALRSANILDKNDNWIGGETVLVQVGDVLDRGNH
ERAVYRILFKLQDSAPQSGGAVHILLGNHEVMNARMDFRYVSRAGFDDFR
GARGGVRFPPYLTQFIRSLEPFKRPRAAALAPGGSLAVELAHRARVAVIV
GENVFVHAGLKKEHLMDNITARKGSDNAINGLNERTSTFLMGMGSLPQAL
RGSGSPIWMRDYSRPPRPDPKSEMCMMLKDTLQFLRAKRMIVGHTPQLQG
INSACDGRVWRIDTGMSAIYGGVPEAFEINGNGQVQVYTPKGVVDGSERL
R*
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mRNA from alignment at tig00000958_pilon:146107..148533+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8312.t1 ID=Ggra8312.t1|Name=Ggra8312.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2427bp|location=Sequence derived from alignment at tig00000958_pilon:146107..148533+ (Gracilaria gracilis GNS1m male)
ATGACAGCACCAGAGAAGCATGACATTCAAATGGAAGCGGAAGCTGTGAT
ATCGATAGTTGCCGATTCCGGTGAGCTCGCTGTGAGCGCAAGTCATGAAG
CTGAAGAGGTCTACCGGGCAAGCCGTCAGCTTGCCGAACTACAACAAGAG
ATAAAGAATGCTTCAAACAATGAGAAAGTCGAACAGGCACTTGTTACTGC
ACAGCAAAACGCAAACGATAGCGGTGAAACGTTGCAAACAATGTGCTTCG
CTGAAGCATGAGCTTGAGAAAATCCACAAGATCCGTAAAGAAGCGATCCT
AAAGGCAGCAGATGTCTCGAAAACGAGCCGCGAACATAGCTGGAATGCAG
GCAAACTTCGTGACAAAGTTCTGGAAAACCGTTCTAGGGCTGTGGAAGGA
AAACGAAGCTGCTTTCAACGATCGATGGAATCAATAAGCGTGTCATTGAT
GTTGATATTTAGGCTCACGGGTTCACGTGGGCAATCTACATGCCTGATAT
TCGAATAGAATGCAATCGAAGAGTCAACATTGCTGCTGCAATAAAAAGTT
CGTTTTGACTCGTTTTGACCATCATAATATTCTGATGGTCCATCAGAATA
GTGAGTGGGATGTTGTACCTGTAGCTCCTTGCTATCTACGAAGTTTTCTC
ATTTGAACATGAAAGAGGAGGTCGTTGTACGGCGTTAAATCATCTCACTC
ATGTCCGACGCCCGGCAGAAGCTTGAGCCCAAACACGCGAAGTGACTAAT
GAAATTCAAGCGAACAGGCTGCCGAGCGAAAAAGACGAGTCAAAGAGTCA
TACCAGGTGTCAATATTTGGCAATGGTTAAATTCCCCTTTGCGTCTTGCT
GAGTAGATAGAGGTATTACACGGCCATATGTCTATCGCACAGCTTCATAT
ATTGTGAATCAGAAGCGATACGGTGAGACCAAGTTACTTCCGTAGTTGGG
AAGAGGCCTTCTTACCTCCTCTTTAACGGGAAATAGATGTTGTATGGACT
AAAGATTGCAATACAGTAATTATTCCATACAGGAAAACAGCGCTCACGGC
GCGATAATCCAGTCCGTCGATTTAATGAGCACTGCTACGAAGGTACAGTA
AGTTACGTAGTCTGCTCAACGAGCACACGCCAAGTACACCAGTGTTTTGG
TATCGGTAACGTGGAAAGTCCACGTCCGAGATCCTTGGCCAGTTCTACCT
GGAATCACCTCTCCATCTCGGAAAGAAAAAGGTTCGGTTAGTTCCCAAAC
TACTCGACCGGTTATGCAAACATCAAAGAAGTCAACCGAAGGGGTTAAAC
CCTATCTTCCTCCCAACCCCTTGATGCGGATGTGTCGCGCTTAGGTGCAG
TCATTTTTGTCGCCACAGCGATTTTGTCAGCCAGCTAGTTGCTCAGACCG
CGATGTAGCACTTGCGAGTTTGCTCGAACGCATTCTGCCTTCAGCTGAAG
CCCGAGCTCTCCCGCCAAACGAGACGCTCCCTTCGTTACCGCCGGTGGCA
GCTCGGTTTCCGGGCGCCAAGCGTATCGTAGCCGTTGGCGATGTTCATGG
GGACGTCAAGGCCTTTCGCACCGCCTTGCGTTCCGCCAATATACTCGACA
AGAATGACAACTGGATTGGAGGCGAAACCGTGCTGGTGCAGGTAGGCGAT
GTCTTAGATCGTGGAAATCATGAACGTGCGGTGTATCGTATCTTGTTCAA
GTTACAAGACTCTGCACCGCAATCAGGCGGAGCCGTTCACATACTTCTCG
GTAACCATGAAGTAATGAATGCGCGTATGGACTTTCGATACGTTTCGCGG
GCTGGGTTTGACGATTTTCGCGGAGCTCGTGGTGGTGTTAGGTTTCCACC
GTATCTAACGCAGTTCATTCGCTCGTTGGAGCCTTTCAAAAGGCCCCGCG
CCGCGGCACTCGCCCCGGGAGGATCCTTAGCTGTTGAACTGGCACATCGT
GCTCGTGTAGCGGTTATAGTCGGTGAGAACGTGTTTGTTCATGCAGGGCT
TAAAAAGGAGCATCTTATGGATAACATAACAGCTCGCAAGGGATCGGATA
ACGCCATCAACGGACTAAACGAGCGCACGAGCACATTTTTGATGGGCATG
GGCTCTCTTCCACAGGCTCTACGCGGAAGCGGCAGTCCAATATGGATGCG
GGATTACTCACGTCCTCCAAGACCAGACCCGAAAAGCGAGATGTGCATGA
TGCTGAAGGATACGCTTCAGTTTTTGCGTGCAAAGCGCATGATTGTTGGA
CATACACCACAATTGCAGGGGATTAACTCGGCTTGTGATGGAAGAGTGTG
GAGAATTGACACTGGTATGAGTGCTATCTACGGTGGTGTTCCAGAAGCCT
TTGAGATCAATGGCAATGGGCAAGTTCAAGTATATACCCCCAAAGGGGTG
GTGGATGGTTCTGAGCGTCTTAGGTGA
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Coding sequence (CDS) from alignment at tig00000958_pilon:146107..148533+

>Ggra8312.t1 ID=Ggra8312.t1|Name=Ggra8312.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1206bp|location=Sequence derived from alignment at tig00000958_pilon:146107..148533+ (Gracilaria gracilis GNS1m male)
ATGACAGCACCAGAGAAGCATGACATTCAAATGGAAGCGGAAGCTGTGAT
ATCGATAGTTGCCGATTCCGGTGAGCTCGCTGTGAGCGCAAGTCATGAAG
CTGAAGAGGTCTACCGGGCAAGCCGTCAGCTTGCCGAACTACAACAAGAG
ATAAAGAATGCTTCAAACAATGAGAAAGTCGAACAGGCACTTGTTACTGC
ACAGCAAAACGCAAACGATAGCGCTGAAGCCCGAGCTCTCCCGCCAAACG
AGACGCTCCCTTCGTTACCGCCGGTGGCAGCTCGGTTTCCGGGCGCCAAG
CGTATCGTAGCCGTTGGCGATGTTCATGGGGACGTCAAGGCCTTTCGCAC
CGCCTTGCGTTCCGCCAATATACTCGACAAGAATGACAACTGGATTGGAG
GCGAAACCGTGCTGGTGCAGGTAGGCGATGTCTTAGATCGTGGAAATCAT
GAACGTGCGGTGTATCGTATCTTGTTCAAGTTACAAGACTCTGCACCGCA
ATCAGGCGGAGCCGTTCACATACTTCTCGGTAACCATGAAGTAATGAATG
CGCGTATGGACTTTCGATACGTTTCGCGGGCTGGGTTTGACGATTTTCGC
GGAGCTCGTGGTGGTGTTAGGTTTCCACCGTATCTAACGCAGTTCATTCG
CTCGTTGGAGCCTTTCAAAAGGCCCCGCGCCGCGGCACTCGCCCCGGGAG
GATCCTTAGCTGTTGAACTGGCACATCGTGCTCGTGTAGCGGTTATAGTC
GGTGAGAACGTGTTTGTTCATGCAGGGCTTAAAAAGGAGCATCTTATGGA
TAACATAACAGCTCGCAAGGGATCGGATAACGCCATCAACGGACTAAACG
AGCGCACGAGCACATTTTTGATGGGCATGGGCTCTCTTCCACAGGCTCTA
CGCGGAAGCGGCAGTCCAATATGGATGCGGGATTACTCACGTCCTCCAAG
ACCAGACCCGAAAAGCGAGATGTGCATGATGCTGAAGGATACGCTTCAGT
TTTTGCGTGCAAAGCGCATGATTGTTGGACATACACCACAATTGCAGGGG
ATTAACTCGGCTTGTGATGGAAGAGTGTGGAGAATTGACACTGGTATGAG
TGCTATCTACGGTGGTGTTCCAGAAGCCTTTGAGATCAATGGCAATGGGC
AAGTTCAAGTATATACCCCCAAAGGGGTGGTGGATGGTTCTGAGCGTCTT
AGGTGA
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