Ggra8305.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8305.t1
Unique NameGgra8305.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length275
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000958_piloncontigtig00000958_pilon:130752..131576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8305Ggra8305Gracilaria gracilis GNS1m malegenetig00000958_pilon 130752..131576 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8305.t1.start1Ggra8305.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000958_pilon 130752..130754 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8305.t1.CDS1Ggra8305.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000958_pilon 130752..131576 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8305.t1.exon1Ggra8305.t1.exon1Gracilaria gracilis GNS1m maleexontig00000958_pilon 130752..131576 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8305.t1.stop1Ggra8305.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000958_pilon 131574..131576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8305.t1Ggra8305.t1Gracilaria gracilis GNS1m malepolypeptidetig00000958_pilon 130752..131576 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8305.t1 ID=Ggra8305.t1|Name=Ggra8305.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=275bp
MAPSARHSETTHELRETASQTQTEADTPPIKATTPRSVRTLSLSEEKEGS
VEMENTKATQSEGAPACTPARNEKSVDAETDELVASRNRCSPQQRNVTLN
ESLDHQVFIATREEVHANAAVITGFDNGHGEQIIVATTAHARTSRSPHAP
LSLSGPVSASLPKRMDTETIPQAITHSNQVSISESGNELVMEVVEQPNIP
KPDFLGSAPSQSSQPPHRTGASGARSALSVAGHRSKEVNETTGDANGGFK
ATSSSSLRYYSHMRTAQQREIYMS*
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spliced messenger RNA

>Ggra8305.t1 ID=Ggra8305.t1|Name=Ggra8305.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=825bp|location=Sequence derived from alignment at tig00000958_pilon:130752..131576+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCCAAGTGCTCGTCACAGCGAAACTACCCATGAACTCCGCGAGAC
GGCCTCCCAAACTCAGACAGAAGCTGATACACCACCAATTAAGGCTACTA
CTCCACGTTCCGTTCGGACACTCTCTCTTTCCGAAGAGAAAGAAGGCAGC
GTCGAAATGGAAAACACCAAGGCTACACAGTCTGAAGGTGCTCCTGCGTG
TACACCAGCCCGAAACGAGAAAAGTGTTGATGCTGAAACCGATGAGCTTG
TGGCAAGTCGAAATAGGTGTTCTCCGCAACAGAGAAATGTCACATTGAAT
GAGTCTTTGGATCACCAGGTGTTTATTGCCACGAGGGAAGAGGTCCATGC
TAATGCTGCCGTAATTACAGGTTTTGATAATGGGCACGGGGAACAAATAA
TTGTCGCCACAACAGCCCATGCAAGAACAAGTCGTTCCCCTCATGCACCA
CTTTCCCTGTCTGGCCCAGTTTCAGCCTCTCTTCCGAAACGAATGGACAC
TGAAACGATTCCTCAAGCTATTACCCACAGCAACCAGGTCTCAATCTCTG
AAAGTGGCAATGAACTTGTCATGGAAGTGGTGGAACAGCCCAATATTCCT
AAACCAGATTTCTTGGGCTCTGCACCCTCTCAATCCAGCCAGCCGCCACA
TAGAACAGGTGCATCTGGTgctaggagcgctctcagcgtggctggccatc
gaagcaaggaggtgaatgagactacaggtgacgCAAATGGAGGCTTCAAA
GCCACCTCTTCATCAAGTTTACGCTACTATTCCCATATGCGAACCGCACA
GCAAAGAGAGATATATATGAGTTGA
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protein sequence of Ggra8305.t1

>Ggra8305.t1 ID=Ggra8305.t1|Name=Ggra8305.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=275bp
MAPSARHSETTHELRETASQTQTEADTPPIKATTPRSVRTLSLSEEKEGS
VEMENTKATQSEGAPACTPARNEKSVDAETDELVASRNRCSPQQRNVTLN
ESLDHQVFIATREEVHANAAVITGFDNGHGEQIIVATTAHARTSRSPHAP
LSLSGPVSASLPKRMDTETIPQAITHSNQVSISESGNELVMEVVEQPNIP
KPDFLGSAPSQSSQPPHRTGASGARSALSVAGHRSKEVNETTGDANGGFK
ATSSSSLRYYSHMRTAQQREIYMS*
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mRNA from alignment at tig00000958_pilon:130752..131576+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8305.t1 ID=Ggra8305.t1|Name=Ggra8305.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=825bp|location=Sequence derived from alignment at tig00000958_pilon:130752..131576+ (Gracilaria gracilis GNS1m male)
ATGGCCCCAAGTGCTCGTCACAGCGAAACTACCCATGAACTCCGCGAGAC
GGCCTCCCAAACTCAGACAGAAGCTGATACACCACCAATTAAGGCTACTA
CTCCACGTTCCGTTCGGACACTCTCTCTTTCCGAAGAGAAAGAAGGCAGC
GTCGAAATGGAAAACACCAAGGCTACACAGTCTGAAGGTGCTCCTGCGTG
TACACCAGCCCGAAACGAGAAAAGTGTTGATGCTGAAACCGATGAGCTTG
TGGCAAGTCGAAATAGGTGTTCTCCGCAACAGAGAAATGTCACATTGAAT
GAGTCTTTGGATCACCAGGTGTTTATTGCCACGAGGGAAGAGGTCCATGC
TAATGCTGCCGTAATTACAGGTTTTGATAATGGGCACGGGGAACAAATAA
TTGTCGCCACAACAGCCCATGCAAGAACAAGTCGTTCCCCTCATGCACCA
CTTTCCCTGTCTGGCCCAGTTTCAGCCTCTCTTCCGAAACGAATGGACAC
TGAAACGATTCCTCAAGCTATTACCCACAGCAACCAGGTCTCAATCTCTG
AAAGTGGCAATGAACTTGTCATGGAAGTGGTGGAACAGCCCAATATTCCT
AAACCAGATTTCTTGGGCTCTGCACCCTCTCAATCCAGCCAGCCGCCACA
TAGAACAGGTGCATCTGGTgctaggagcgctctcagcgtggctggccatc
gaagcaaggaggtgaatgagactacaggtgacgCAAATGGAGGCTTCAAA
GCCACCTCTTCATCAAGTTTACGCTACTATTCCCATATGCGAACCGCACA
GCAAAGAGAGATATATATGAGTTGA
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Coding sequence (CDS) from alignment at tig00000958_pilon:130752..131576+

>Ggra8305.t1 ID=Ggra8305.t1|Name=Ggra8305.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=825bp|location=Sequence derived from alignment at tig00000958_pilon:130752..131576+ (Gracilaria gracilis GNS1m male)
ATGGCCCCAAGTGCTCGTCACAGCGAAACTACCCATGAACTCCGCGAGAC
GGCCTCCCAAACTCAGACAGAAGCTGATACACCACCAATTAAGGCTACTA
CTCCACGTTCCGTTCGGACACTCTCTCTTTCCGAAGAGAAAGAAGGCAGC
GTCGAAATGGAAAACACCAAGGCTACACAGTCTGAAGGTGCTCCTGCGTG
TACACCAGCCCGAAACGAGAAAAGTGTTGATGCTGAAACCGATGAGCTTG
TGGCAAGTCGAAATAGGTGTTCTCCGCAACAGAGAAATGTCACATTGAAT
GAGTCTTTGGATCACCAGGTGTTTATTGCCACGAGGGAAGAGGTCCATGC
TAATGCTGCCGTAATTACAGGTTTTGATAATGGGCACGGGGAACAAATAA
TTGTCGCCACAACAGCCCATGCAAGAACAAGTCGTTCCCCTCATGCACCA
CTTTCCCTGTCTGGCCCAGTTTCAGCCTCTCTTCCGAAACGAATGGACAC
TGAAACGATTCCTCAAGCTATTACCCACAGCAACCAGGTCTCAATCTCTG
AAAGTGGCAATGAACTTGTCATGGAAGTGGTGGAACAGCCCAATATTCCT
AAACCAGATTTCTTGGGCTCTGCACCCTCTCAATCCAGCCAGCCGCCACA
TAGAACAGGTGCATCTGGTgctaggagcgctctcagcgtggctggccatc
gaagcaaggaggtgaatgagactacaggtgacgCAAATGGAGGCTTCAAA
GCCACCTCTTCATCAAGTTTACGCTACTATTCCCATATGCGAACCGCACA
GCAAAGAGAGATATATATGAGTTGA
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