Ggra830.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra830.t1
Unique NameGgra830.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length375
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000202_piloncontigtig00000202_pilon:1696..4154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog35754.JNYJ01000093_gene9263
PFAMsInhibitor_I9,P_proprotein,Peptidase_S8
Max annot lvl201174|Actinobacteria
Evalue1.72e-42
EggNOG OGsCOG1404@1|root,COG4935@1|root,COG1404@2|Bacteria,COG4935@2|Bacteria,2GJYH@201174|Actinobacteria,4DADU@85008|Micromonosporales
DescriptionBelongs to the peptidase S8 family
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra830Ggra830Gracilaria gracilis GNS1m malegenetig00000202_pilon 1696..4154 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra830.t1Ggra830.t1Gracilaria gracilis GNS1m malepolypeptidetig00000202_pilon 1696..4154 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra830.t1.start1Ggra830.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000202_pilon 1696..1698 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra830.t1.CDS1Ggra830.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000202_pilon 1696..2653 +
Ggra830.t1.CDS2Ggra830.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000202_pilon 3859..3942 +
Ggra830.t1.CDS3Ggra830.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000202_pilon 4072..4154 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra830.t1.exon1Ggra830.t1.exon1Gracilaria gracilis GNS1m maleexontig00000202_pilon 1696..2653 +
Ggra830.t1.exon2Ggra830.t1.exon2Gracilaria gracilis GNS1m maleexontig00000202_pilon 3859..3942 +
Ggra830.t1.exon3Ggra830.t1.exon3Gracilaria gracilis GNS1m maleexontig00000202_pilon 4072..4154 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra830.t1.intron1Ggra830.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000202_pilon 2654..3858 +
Ggra830.t1.intron2Ggra830.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000202_pilon 3943..4071 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra830.t1.stop1Ggra830.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000202_pilon 4152..4154 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra830.t1 ID=Ggra830.t1|Name=Ggra830.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=375bp
MIKAKCGSRAFQLVRQSRRFVAVHQDQIIRLATPLRAHITKGTNHESRQL
PPARQRSFEKISALSFNENRTGAVAWDGTLVDLSSQRMARKCSSNGGLGV
TVYVIDTGCRGSHEQLRGRVRTMVAPGSRYRSGEDDHGHGTHVAATIGGR
DFGIAPRVNLVCIKALSERNEGSAHDVVAGVQLAIRMHKGQRGPGIISIS
LGGRAVRRYTVLDAAVNTASKAGLSFVVAAGNAGANACSFTPGRARRAIT
VAAVDGEGKIAGFSNSGACVSVGAPGVRVWSAVADEDDAYGVSSGTSMAA
PFVSGVVALLVGDRGKTRTTRHLPKALPIVVEPVRGGLSYSTHFVLSAHF
ILVQPAVEAASQAGMNGKYASLVL*
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spliced messenger RNA

>Ggra830.t1 ID=Ggra830.t1|Name=Ggra830.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1125bp|location=Sequence derived from alignment at tig00000202_pilon:1696..4154+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTAAAGCCAAATGCGGAAGCAGAGCTTTTCAACTGGTTCGACAAAG
CCGACGATTTGTCGCTGTTCATCAAGACCAGATAATTCGACTCGCAACTC
CATTGCGCGCCCATATCACAAAAGGTACCAACCATGAATCAAGACAACTT
CCGCCAGCTCGACAACGATCGTTCGAGAAGATCTCAGCGCTGTCGTTCAA
CGAAAATCGTACTGGAGCTGTTGCTTGGGATGGTACTCTAGTTGACTTAA
GTTCACAACGAATGGCGAGAAAGTGTTCTTCTAATGGGGGTTTGGGTGTA
ACGGTGTATGTAATCGATACAGGCTGTCGAGGCAGTCACGAACAGTTGCG
AGGTCGAGTGAGAACAATGGTGGCACCAGGAAGCCGGTATCGATCTGGTG
AAGACGACCATGGGCACGGGACTCATGTTGCCGCCACTATTGGTGGGCGA
GACTTTGGAATAGCGCCTCGAGTGAACCTGGTGTGTATCAAAGCGCTTTC
GGAACGGAACGAAGGAAGTGCTCATGATGTGGTTGCTGGAGTACAATTGG
CGATAAGGATGCACAAAGGGCAACGTGGGCCGGGTATAATATCCATCTCG
CTGGGTGGTCGCGCCGTGAGAAGATACACAGTTCTGGATGCAGCGGTGAA
TACGGCATCCAAAGCAGGTTTAAGCTTCGTTGTAGCAGCGGGGAATGCTG
GGGCGAATGCATGCTCCTTCACGCCAGGAAGGGCACGGAGAGCGATCACT
GTTGCAGCCGTCGACGGGGAGGGGAAAATAGCAGGGTTTTCAAACTCTGG
GGCTTGTGTCAGCGTTGGTGCTCCTGGTGTGCGAGTATGGAGCGCGGTGG
CCGACGAGGACGACGCATACGGCGTGAGTTCCGGGACTTCGATGGCCGCT
CCTTTTGTGTCTGGCGTCGTCGCCTTATTGGTGGGTGACCGAGGGAAAAC
GCGGACAACCAGACACCTTCCTAAAGCTCTTCCTATTGTCGTCGAACCCG
TGCGGGGAGGCCTGTCGTATAGTACGCATTTTGTTCTTTCGGCGCATTTC
ATTTTGGTTCAGCCTGCTGTGGAAGCTGCTTCCCAAGCTGGGATGAATGG
AAAGTATGCATCATTGGTGTTGTAA
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protein sequence of Ggra830.t1

>Ggra830.t1 ID=Ggra830.t1|Name=Ggra830.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=375bp
MIKAKCGSRAFQLVRQSRRFVAVHQDQIIRLATPLRAHITKGTNHESRQL
PPARQRSFEKISALSFNENRTGAVAWDGTLVDLSSQRMARKCSSNGGLGV
TVYVIDTGCRGSHEQLRGRVRTMVAPGSRYRSGEDDHGHGTHVAATIGGR
DFGIAPRVNLVCIKALSERNEGSAHDVVAGVQLAIRMHKGQRGPGIISIS
LGGRAVRRYTVLDAAVNTASKAGLSFVVAAGNAGANACSFTPGRARRAIT
VAAVDGEGKIAGFSNSGACVSVGAPGVRVWSAVADEDDAYGVSSGTSMAA
PFVSGVVALLVGDRGKTRTTRHLPKALPIVVEPVRGGLSYSTHFVLSAHF
ILVQPAVEAASQAGMNGKYASLVL*
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mRNA from alignment at tig00000202_pilon:1696..4154+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra830.t1 ID=Ggra830.t1|Name=Ggra830.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2459bp|location=Sequence derived from alignment at tig00000202_pilon:1696..4154+ (Gracilaria gracilis GNS1m male)
ATGATTAAAGCCAAATGCGGAAGCAGAGCTTTTCAACTGGTTCGACAAAG
CCGACGATTTGTCGCTGTTCATCAAGACCAGATAATTCGACTCGCAACTC
CATTGCGCGCCCATATCACAAAAGGTACCAACCATGAATCAAGACAACTT
CCGCCAGCTCGACAACGATCGTTCGAGAAGATCTCAGCGCTGTCGTTCAA
CGAAAATCGTACTGGAGCTGTTGCTTGGGATGGTACTCTAGTTGACTTAA
GTTCACAACGAATGGCGAGAAAGTGTTCTTCTAATGGGGGTTTGGGTGTA
ACGGTGTATGTAATCGATACAGGCTGTCGAGGCAGTCACGAACAGTTGCG
AGGTCGAGTGAGAACAATGGTGGCACCAGGAAGCCGGTATCGATCTGGTG
AAGACGACCATGGGCACGGGACTCATGTTGCCGCCACTATTGGTGGGCGA
GACTTTGGAATAGCGCCTCGAGTGAACCTGGTGTGTATCAAAGCGCTTTC
GGAACGGAACGAAGGAAGTGCTCATGATGTGGTTGCTGGAGTACAATTGG
CGATAAGGATGCACAAAGGGCAACGTGGGCCGGGTATAATATCCATCTCG
CTGGGTGGTCGCGCCGTGAGAAGATACACAGTTCTGGATGCAGCGGTGAA
TACGGCATCCAAAGCAGGTTTAAGCTTCGTTGTAGCAGCGGGGAATGCTG
GGGCGAATGCATGCTCCTTCACGCCAGGAAGGGCACGGAGAGCGATCACT
GTTGCAGCCGTCGACGGGGAGGGGAAAATAGCAGGGTTTTCAAACTCTGG
GGCTTGTGTCAGCGTTGGTGCTCCTGGTGTGCGAGTATGGAGCGCGGTGG
CCGACGAGGACGACGCATACGGCGTGAGTTCCGGGACTTCGATGGCCGCT
CCTTTTGTGTCTGGCGTCGTCGCCTTATTGGTGGGTGACCGAGGGAAAAC
GCGGACAAGTACATTGAGGAAATGGTTAAAAAGCATGGGCAGGAAAGGTC
ATGACGGCATTTCGGTCGTTTCGGCAAGAACGTTTTGCGAGTGGCGGCAG
CGATCCAGACAGAGGCGAACGGTGATGGGGTTCTGAAGGCCATTAAATGT
CTAGTAGTAGGTGAAGAGAGACCTTCGCGGAGTCTGTACGGGAAAAGCAC
ACGTTTCGAACGTTTCTCTTCTTCTATGCACAGGTAGGCCTATCTACCGT
TGTAGTAAAACGTGAAGAGCCGGCCGGAATGACAAACAGTCACCTTTCAC
TGTTTTCTTTCTTATATTGCTGGAGTGGAGGAGGGCGAGTATGAGCGATA
GAACGCTACCCTCGCACCTATAGTCGCTCTCGGACCAGATGTTCGACACG
TAGATACAAATGGGCACAAGATAACCCTCCACGCTTGACGGTTAGTGCTG
CAACCGAGCCCGGCTCCAGCAGAGCAGCTCCTCAACCCGTTCCTTTCAGT
TTCACTTCTTGGAATGAACAATGAAGCGTTTCGTTTCATTTCATTTCCTG
CCTCCCATGCCTGAGTGGGACAAAAGCTTTGACCAGTTTGAGAGTGCCGA
CATTGTTCAAATCAGCTACTTTGTTGAGATGCTTGTGAACTTGGTCGTCA
TCTGAGAAATATGAGGTAGAGAAAAGCTCGTCTACGTTTTCAATGCTGTC
TTCATGGACGTTCCGAGTACTGAAGGACTCCTTACAACCAAATGCACGCA
GTAGAGCTTGCAAATCATTCTGGAGAGACTCCTTGCGTATGACGTAGTCG
GGAATTGGCTTCCTCTTTATCTCTGCGTTCTCAGCCTCCTCTGTTAAGTA
GGGATATGCATTGAGTTCGTCCAAGCTTCGCAACGAACCTTTTTCAAAGT
CCTGAGCTTGGAGCAGTTCTAGCGCTTGTGCCATGTCCCATGAGTCTCGG
GTGGTGTTTCCGTGACGCTTTGCCAACAAATGTTTTATGCCACTCCACAA
GCGCTCTTTTATGGGCGCAGTGGACGATATGTACAAGAAATCGTCACATT
TCGATTCAATGAGTTTCACATCTTTCTCACTTACATAAACATGTCTCGTA
ACCAATGCTCGTCGATTGTTTTTCACTTCTGATCAGCATCAGTTCAATTG
CGGTTGCTCTTCTCTTACTACTCTTCGCCTTTGGCAGCGGTTGTTGAGTG
TATCCCGCTTTAGCCAGACACCTTCCTAAAGCTCTTCCTATTGTCGTCGA
ACCCGTGCGGGGAGGCCTGTCGTATAGTACGCATTTTGTTCTTTCGGGTG
AGTTCTCGCTTGTGTGGTCGAACCTTTCGGTAATTCCTCTCTTCTGCGTT
TGAAACACAGACGTGCATAACATGTAGATTGTTAGCACAGGGAATGAAAC
TAACACCGTAGATTTGACTTTCAAAGCGCATTTCATTTTGGTTCAGCCTG
CTGTGGAAGCTGCTTCCCAAGCTGGGATGAATGGAAAGTATGCATCATTG
GTGTTGTAA
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Coding sequence (CDS) from alignment at tig00000202_pilon:1696..4154+

>Ggra830.t1 ID=Ggra830.t1|Name=Ggra830.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1125bp|location=Sequence derived from alignment at tig00000202_pilon:1696..4154+ (Gracilaria gracilis GNS1m male)
ATGATTAAAGCCAAATGCGGAAGCAGAGCTTTTCAACTGGTTCGACAAAG
CCGACGATTTGTCGCTGTTCATCAAGACCAGATAATTCGACTCGCAACTC
CATTGCGCGCCCATATCACAAAAGGTACCAACCATGAATCAAGACAACTT
CCGCCAGCTCGACAACGATCGTTCGAGAAGATCTCAGCGCTGTCGTTCAA
CGAAAATCGTACTGGAGCTGTTGCTTGGGATGGTACTCTAGTTGACTTAA
GTTCACAACGAATGGCGAGAAAGTGTTCTTCTAATGGGGGTTTGGGTGTA
ACGGTGTATGTAATCGATACAGGCTGTCGAGGCAGTCACGAACAGTTGCG
AGGTCGAGTGAGAACAATGGTGGCACCAGGAAGCCGGTATCGATCTGGTG
AAGACGACCATGGGCACGGGACTCATGTTGCCGCCACTATTGGTGGGCGA
GACTTTGGAATAGCGCCTCGAGTGAACCTGGTGTGTATCAAAGCGCTTTC
GGAACGGAACGAAGGAAGTGCTCATGATGTGGTTGCTGGAGTACAATTGG
CGATAAGGATGCACAAAGGGCAACGTGGGCCGGGTATAATATCCATCTCG
CTGGGTGGTCGCGCCGTGAGAAGATACACAGTTCTGGATGCAGCGGTGAA
TACGGCATCCAAAGCAGGTTTAAGCTTCGTTGTAGCAGCGGGGAATGCTG
GGGCGAATGCATGCTCCTTCACGCCAGGAAGGGCACGGAGAGCGATCACT
GTTGCAGCCGTCGACGGGGAGGGGAAAATAGCAGGGTTTTCAAACTCTGG
GGCTTGTGTCAGCGTTGGTGCTCCTGGTGTGCGAGTATGGAGCGCGGTGG
CCGACGAGGACGACGCATACGGCGTGAGTTCCGGGACTTCGATGGCCGCT
CCTTTTGTGTCTGGCGTCGTCGCCTTATTGGTGGGTGACCGAGGGAAAAC
GCGGACAACCAGACACCTTCCTAAAGCTCTTCCTATTGTCGTCGAACCCG
TGCGGGGAGGCCTGTCGTATAGTACGCATTTTGTTCTTTCGGCGCATTTC
ATTTTGGTTCAGCCTGCTGTGGAAGCTGCTTCCCAAGCTGGGATGAATGG
AAAGTATGCATCATTGGTGTTGTAA
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