Ggra8269.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8269.t1
Unique NameGgra8269.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length476
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000179_piloncontigtig00000179_pilon:88157..89584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog48698.ENSPFOP00000016027
Preferred nameKLHL7
PFAMsBACK,BTB,Kelch_1
Max annot lvl33208|Metazoa
KEGG koko:K10445
GOsGO:0000151,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005886,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016567,GO:0019538,GO:0031461,GO:0031463,GO:0031974,GO:0031981,GO:0032446,GO:0032991,GO:0036211,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046983,GO:0048471,GO:0070013,GO:0070647,GO:0071704,GO:0071944,GO:1901564,GO:1902494,GO:1990234
Evalue6.39e-27
EggNOG OGsKOG4441@1|root,KOG4441@2759|Eukaryota,39PKU@33154|Opisthokonta,3BCH9@33208|Metazoa,3CZDA@33213|Bilateria,481J1@7711|Chordata,49038@7742|Vertebrata,49ZEE@7898|Actinopterygii
DescriptionKelch-like family member 7
COG categoryT
BRITEko00000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8269Ggra8269Gracilaria gracilis GNS1m malegenetig00000179_pilon 88157..89584 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8269.t1.start1Ggra8269.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000179_pilon 88157..88159 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8269.t1.CDS1Ggra8269.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000179_pilon 88157..89584 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8269.t1.exon1Ggra8269.t1.exon1Gracilaria gracilis GNS1m maleexontig00000179_pilon 88157..89584 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8269.t1.stop1Ggra8269.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000179_pilon 89582..89584 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8269.t1Ggra8269.t1Gracilaria gracilis GNS1m malepolypeptidetig00000179_pilon 88157..89584 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8269.t1 ID=Ggra8269.t1|Name=Ggra8269.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=476bp
MDSPSMPSTTAVTLPLARRPCSPRLQQPIKRRRDANSAHISMAGECTIGG
HLDAPAHLRCVLANMLQDPQLHSLCDVVLIVQDERFPAHRAVLAAVSTVF
KAMFTNSMKERSSPEIELRSLDKRAWRMAMQYIYHAQLDIHDEPTALLLL
ATARMYQLERLECFVQNFLVSRVCMQNCFALLHQAQQYDLAALEAACYRA
MEDNFEAISLSPAFLQCPYVLLKRVVSSGALMVKSEVFVFEAMLRWVQAE
EKQRNEHLEELLQQLRLDRLSDSQLALVGRSPIVFKSESFRQMLFDRLTR
QRGDEQVQRALQSACHLKAHRRDAKVFSFSHVQRAITRMPAADEEEIVRT
PWALDEQSGILWRLKIYPRGYGKAKELFLSMYVQARSANRRRLDVTAKFD
IFLINRKDTTQTISFSSSHHFTEVSDHWGFHRFLQLSQMRNTSLGFLDEE
TDSLLLGATLYMPCPTKDKSCCTST*
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spliced messenger RNA

>Ggra8269.t1 ID=Ggra8269.t1|Name=Ggra8269.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1428bp|location=Sequence derived from alignment at tig00000179_pilon:88157..89584+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAGTCCGTCCATGCCGTCTACCACCGCCGTCACGCTGCCGCTTGC
GCGTCGCCCGTGTTCGCCGCGTCTGCAGCAGCCCATCAAGCGTCGTCGCG
ACGCCAACAGCGCGCACATCTCCATGGCGGGCGAGTGTACCATCGGCGGT
CATCTCGATGCTCCCGCTCATCTTCGCTGTGTGCTTGCAAATATGCTACA
AGATCCTCAACTGCATTCTCTTTGCGACGTGGTTCTCATCGTGCAGGACG
AGCGTTTTCCGGCCCATCGCGCCGTTCTGGCCGCCGTGTCCACCGTCTTC
AAGGCCATGTTCACCAACTCCATGAAGGAGCGCTCGTCGCCCGAGATCGA
GCTGCGTTCGTTGGACAAGCGCGCGTGGCGCATGGCCATGCAGTACATCT
ACCACGCGCAGCTGGACATTCACGACGAGCCCACAGCGCTGTTGCTGCTG
GCCACCGCGCGCATGTACCAGCTGGAGCGTTTGGAATGCTTTGTGCAAAA
CTTCTTGGTGTCGCGCGTGTGCATGCAGAATTGCTTCGCCTTGCTGCACC
AGGCGCAGCAGTACGACCTGGCTGCGTTGGAGGCCGCCTGTTACCGCGCC
ATGGAGGATAACTTTGAGGCTATTTCGCTGTCGCCTGCCTTTCTGCAGTG
CCCGTACGTGCTGCTCAAGCGCGTCGTTTCCAGCGGCGCGCTCATGGTCA
AGAGCGAGGTTTTTGTGTTCGAAGCCATGTTGAGGTGGGTTCAGGCGGAG
GAGAAGCAGAGAAACGAGCACTTGGAAGAACTGCTTCAGCAGCTTCGGCT
GGATAGGTTGTCCGACTCGCAGCTGGCTCTCGTGGGGCGGTCGCCGATTG
TGTTCAAGTCGGAGTCGTTCCGCCAGATGCTGTTTGACAGACTTACGAGA
CAACGGGGTGACGAGCAGGTGCAACGCGCGCTTCAGAGCGCGTGTCACCT
CAAAGCGCACCGTCGCGATGCAAAGGTGTTTTCATTCTCTCATGTGCAGC
GTGCTATCACCAGAATGCCTGCCGCCGATGAAGAAGAGATTGTGCGCACT
CCGTGGGCGCTCGATGAGCAAAGTGGCATCCTGTGGCGACTCAAGATTTA
TCCGAGGGGGTATGGAAAGGCAAAGGAACTGTTCTTGTCCATGTACGTGC
AGGCGAGAAGTGCCAACCGACGCCGTCTGGATGTGACGGCCAAATTCGAT
ATCTTTCTCATCAATCGGAAAGATACTACGCAAACCATTTCATTCTCGTC
GTCGCACCACTTCACAGAGGTGAGCGATCATTGGGGGTTTCATCGATTCC
TGCAATTATCGCAGATGAGAAATACGTCGCTGGGCTTCCTGGACGAGGAG
ACTGACTCTTTGTTGCTTGGAGCCACACTATACATGCCTTGTCCCACAAA
GGACAAGTCTTGCTGTACATCGACATGA
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protein sequence of Ggra8269.t1

>Ggra8269.t1 ID=Ggra8269.t1|Name=Ggra8269.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=476bp
MDSPSMPSTTAVTLPLARRPCSPRLQQPIKRRRDANSAHISMAGECTIGG
HLDAPAHLRCVLANMLQDPQLHSLCDVVLIVQDERFPAHRAVLAAVSTVF
KAMFTNSMKERSSPEIELRSLDKRAWRMAMQYIYHAQLDIHDEPTALLLL
ATARMYQLERLECFVQNFLVSRVCMQNCFALLHQAQQYDLAALEAACYRA
MEDNFEAISLSPAFLQCPYVLLKRVVSSGALMVKSEVFVFEAMLRWVQAE
EKQRNEHLEELLQQLRLDRLSDSQLALVGRSPIVFKSESFRQMLFDRLTR
QRGDEQVQRALQSACHLKAHRRDAKVFSFSHVQRAITRMPAADEEEIVRT
PWALDEQSGILWRLKIYPRGYGKAKELFLSMYVQARSANRRRLDVTAKFD
IFLINRKDTTQTISFSSSHHFTEVSDHWGFHRFLQLSQMRNTSLGFLDEE
TDSLLLGATLYMPCPTKDKSCCTST*
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mRNA from alignment at tig00000179_pilon:88157..89584+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8269.t1 ID=Ggra8269.t1|Name=Ggra8269.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1428bp|location=Sequence derived from alignment at tig00000179_pilon:88157..89584+ (Gracilaria gracilis GNS1m male)
ATGGACAGTCCGTCCATGCCGTCTACCACCGCCGTCACGCTGCCGCTTGC
GCGTCGCCCGTGTTCGCCGCGTCTGCAGCAGCCCATCAAGCGTCGTCGCG
ACGCCAACAGCGCGCACATCTCCATGGCGGGCGAGTGTACCATCGGCGGT
CATCTCGATGCTCCCGCTCATCTTCGCTGTGTGCTTGCAAATATGCTACA
AGATCCTCAACTGCATTCTCTTTGCGACGTGGTTCTCATCGTGCAGGACG
AGCGTTTTCCGGCCCATCGCGCCGTTCTGGCCGCCGTGTCCACCGTCTTC
AAGGCCATGTTCACCAACTCCATGAAGGAGCGCTCGTCGCCCGAGATCGA
GCTGCGTTCGTTGGACAAGCGCGCGTGGCGCATGGCCATGCAGTACATCT
ACCACGCGCAGCTGGACATTCACGACGAGCCCACAGCGCTGTTGCTGCTG
GCCACCGCGCGCATGTACCAGCTGGAGCGTTTGGAATGCTTTGTGCAAAA
CTTCTTGGTGTCGCGCGTGTGCATGCAGAATTGCTTCGCCTTGCTGCACC
AGGCGCAGCAGTACGACCTGGCTGCGTTGGAGGCCGCCTGTTACCGCGCC
ATGGAGGATAACTTTGAGGCTATTTCGCTGTCGCCTGCCTTTCTGCAGTG
CCCGTACGTGCTGCTCAAGCGCGTCGTTTCCAGCGGCGCGCTCATGGTCA
AGAGCGAGGTTTTTGTGTTCGAAGCCATGTTGAGGTGGGTTCAGGCGGAG
GAGAAGCAGAGAAACGAGCACTTGGAAGAACTGCTTCAGCAGCTTCGGCT
GGATAGGTTGTCCGACTCGCAGCTGGCTCTCGTGGGGCGGTCGCCGATTG
TGTTCAAGTCGGAGTCGTTCCGCCAGATGCTGTTTGACAGACTTACGAGA
CAACGGGGTGACGAGCAGGTGCAACGCGCGCTTCAGAGCGCGTGTCACCT
CAAAGCGCACCGTCGCGATGCAAAGGTGTTTTCATTCTCTCATGTGCAGC
GTGCTATCACCAGAATGCCTGCCGCCGATGAAGAAGAGATTGTGCGCACT
CCGTGGGCGCTCGATGAGCAAAGTGGCATCCTGTGGCGACTCAAGATTTA
TCCGAGGGGGTATGGAAAGGCAAAGGAACTGTTCTTGTCCATGTACGTGC
AGGCGAGAAGTGCCAACCGACGCCGTCTGGATGTGACGGCCAAATTCGAT
ATCTTTCTCATCAATCGGAAAGATACTACGCAAACCATTTCATTCTCGTC
GTCGCACCACTTCACAGAGGTGAGCGATCATTGGGGGTTTCATCGATTCC
TGCAATTATCGCAGATGAGAAATACGTCGCTGGGCTTCCTGGACGAGGAG
ACTGACTCTTTGTTGCTTGGAGCCACACTATACATGCCTTGTCCCACAAA
GGACAAGTCTTGCTGTACATCGACATGA
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Coding sequence (CDS) from alignment at tig00000179_pilon:88157..89584+

>Ggra8269.t1 ID=Ggra8269.t1|Name=Ggra8269.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1428bp|location=Sequence derived from alignment at tig00000179_pilon:88157..89584+ (Gracilaria gracilis GNS1m male)
ATGGACAGTCCGTCCATGCCGTCTACCACCGCCGTCACGCTGCCGCTTGC
GCGTCGCCCGTGTTCGCCGCGTCTGCAGCAGCCCATCAAGCGTCGTCGCG
ACGCCAACAGCGCGCACATCTCCATGGCGGGCGAGTGTACCATCGGCGGT
CATCTCGATGCTCCCGCTCATCTTCGCTGTGTGCTTGCAAATATGCTACA
AGATCCTCAACTGCATTCTCTTTGCGACGTGGTTCTCATCGTGCAGGACG
AGCGTTTTCCGGCCCATCGCGCCGTTCTGGCCGCCGTGTCCACCGTCTTC
AAGGCCATGTTCACCAACTCCATGAAGGAGCGCTCGTCGCCCGAGATCGA
GCTGCGTTCGTTGGACAAGCGCGCGTGGCGCATGGCCATGCAGTACATCT
ACCACGCGCAGCTGGACATTCACGACGAGCCCACAGCGCTGTTGCTGCTG
GCCACCGCGCGCATGTACCAGCTGGAGCGTTTGGAATGCTTTGTGCAAAA
CTTCTTGGTGTCGCGCGTGTGCATGCAGAATTGCTTCGCCTTGCTGCACC
AGGCGCAGCAGTACGACCTGGCTGCGTTGGAGGCCGCCTGTTACCGCGCC
ATGGAGGATAACTTTGAGGCTATTTCGCTGTCGCCTGCCTTTCTGCAGTG
CCCGTACGTGCTGCTCAAGCGCGTCGTTTCCAGCGGCGCGCTCATGGTCA
AGAGCGAGGTTTTTGTGTTCGAAGCCATGTTGAGGTGGGTTCAGGCGGAG
GAGAAGCAGAGAAACGAGCACTTGGAAGAACTGCTTCAGCAGCTTCGGCT
GGATAGGTTGTCCGACTCGCAGCTGGCTCTCGTGGGGCGGTCGCCGATTG
TGTTCAAGTCGGAGTCGTTCCGCCAGATGCTGTTTGACAGACTTACGAGA
CAACGGGGTGACGAGCAGGTGCAACGCGCGCTTCAGAGCGCGTGTCACCT
CAAAGCGCACCGTCGCGATGCAAAGGTGTTTTCATTCTCTCATGTGCAGC
GTGCTATCACCAGAATGCCTGCCGCCGATGAAGAAGAGATTGTGCGCACT
CCGTGGGCGCTCGATGAGCAAAGTGGCATCCTGTGGCGACTCAAGATTTA
TCCGAGGGGGTATGGAAAGGCAAAGGAACTGTTCTTGTCCATGTACGTGC
AGGCGAGAAGTGCCAACCGACGCCGTCTGGATGTGACGGCCAAATTCGAT
ATCTTTCTCATCAATCGGAAAGATACTACGCAAACCATTTCATTCTCGTC
GTCGCACCACTTCACAGAGGTGAGCGATCATTGGGGGTTTCATCGATTCC
TGCAATTATCGCAGATGAGAAATACGTCGCTGGGCTTCCTGGACGAGGAG
ACTGACTCTTTGTTGCTTGGAGCCACACTATACATGCCTTGTCCCACAAA
GGACAAGTCTTGCTGTACATCGACATGA
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