Ggra8237.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8237.t1
Unique NameGgra8237.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length423
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000872_piloncontigtig00000872_pilon:213482..214750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FH28
PFAMsAnk_2,Cupin_8
Max annot lvl2759|Eukaryota
Evalue3.05e-64
EggNOG OGsKOG2131@1|root,KOG2131@2759|Eukaryota
DescriptionCupin-like domain
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8237Ggra8237Gracilaria gracilis GNS1m malegenetig00000872_pilon 213482..214750 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8237.t1.start1Ggra8237.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000872_pilon 213482..213484 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8237.t1.CDS1Ggra8237.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000872_pilon 213482..214750 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8237.t1.exon1Ggra8237.t1.exon1Gracilaria gracilis GNS1m maleexontig00000872_pilon 213482..214750 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8237.t1.stop1Ggra8237.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000872_pilon 214748..214750 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8237.t1Ggra8237.t1Gracilaria gracilis GNS1m malepolypeptidetig00000872_pilon 213482..214750 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8237.t1 ID=Ggra8237.t1|Name=Ggra8237.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=423bp
MAPPHVALALSALVAVASVLLVLRLPPPVVDVLSFAARHQFAWGSSTTPV
PISTVSVFAKSLLSRDAHALPPELRALIPHDDVLSLQPVRDYANAQRMRK
LLQLCARFHCRFDRQEQRFGLTALHLAAAAGDAPLTHWLLENGAQPMPDF
AGRMPANLTFPTFIRNAKAVARSLHPDCDLPTVDFDTHPDTARSEVRRLI
NEGEPILMRGAYNFYKHADYPPMPQLVEQFGHVNVTVGAVPYADAFNLTT
TRMTLAEYYDTIYEEAATAPSYVFNKHSQICQTAYATLSALVNDSFPLQL
IVPPDHTGGLAGIHFFLGNEQSGAPFHVHADALNAAVYGTKQWYIFTPAS
TIYSRKTISEWVREQLPSLPEEERPLQCLQRAGDVVYVPLDWGHAVLNVE
HDTFGVALELLNTRDTYAHLWR*
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spliced messenger RNA

>Ggra8237.t1 ID=Ggra8237.t1|Name=Ggra8237.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1269bp|location=Sequence derived from alignment at tig00000872_pilon:213482..214750+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCTCCACACGTCGCGCTCGCGTTGAGCGCGCTCGTCGCCGTCGC
CTCCGTGCTGCTCGTGCTGCGCCTGCCGCCGCCCGTCGTCGACGTGCTGT
CCTTCGCCGCGCGCCACCAGTTTGCGTGGGGGTCGTCCACCACGCCCGTG
CCCATCTCCACTGTCTCCGTGTTCGCCAAGTCGCTGCTGTCGCGCGATGC
GCATGCGCTGCCGCCCGAGCTGCGCGCGCTCATTCCGCACGACGATGTGC
TCAGCTTGCAGCCTGTGCGCGACTATGCCAATGCGCAGCGAATGCGCAAA
TTGCTCCAGCTCTGTGCTCGCTTTCACTGCCGCTTCGATCGCCAGGAGCA
GCGCTTCGGCCTCACTGCGTTGCATCTCGCTGCTGCGGCGGGCGATGCGC
CGTTAACCCACTGGCTGCTTGAGAATGGCGCCCAGCCCATGCCAGACTTC
GCGGGAAGAATGCCAGCAAACCTCACCTTCCCCACGTTCATCCGCAACGC
AAAAGCTGTCGCTCGCAGCCTGCACCCCGACTGCGATTTGCCCACCGTTG
ACTTCGACACCCATCCTGACACTGCGCGCAGTGAAGTGCGCCGTCTTATC
AACGAGGGCGAACCCATTCTCATGCGCGGCGCCTACAACTTTTACAAGCA
CGCTGATTATCCCCCAATGCCACAGCTTGTCGAGCAGTTCGGCCATGTTA
ATGTCACCGTCGGTGCCGTGCCCTATGCAGATGCATTCAATCTCACTACT
ACGCGCATGACGCTTGCTGAGTATTACGATACCATATACGAAGAGGCCGC
CACCGCTCCCAGCTACGTGTTCAACAAACATTCTCAAATTTGCCAAACTG
CGTATGCCACACTTTCGGCACTTGTCAATGATTCATTTCCTCTGCAACTC
ATCGTGCCGCCGGATCACACTGGTGGTTTGGCGGGCATTCACTTCTTCTT
GGGCAATGAGCAGTCGGGAGCTCCTTTTCATGTGCACGCCGACGCTCTTA
ATGCTGCTGTGTATGGTACCAAGCAATGGTACATTTTCACCCCGGCGAGC
ACTATTTACTCCAGAAAGACTATTAGTGAGTGGGTTCGCGAACAACTCCC
GTCGCTTCCGGAGGAAGAGCGGCCACTGCAGTGTTTGCAGCGAGCGGGTG
ATGTCGTATACGTGCCCCTGGACTGGGGCCATGCCGTACTTAACGTTGAG
CATGATACCTTCGGGGTTGCGTTGGAGCTGCTTAATACTCGCGATACTTA
CGCTCACCTGTGGAGATGA
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protein sequence of Ggra8237.t1

>Ggra8237.t1 ID=Ggra8237.t1|Name=Ggra8237.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=423bp
MAPPHVALALSALVAVASVLLVLRLPPPVVDVLSFAARHQFAWGSSTTPV
PISTVSVFAKSLLSRDAHALPPELRALIPHDDVLSLQPVRDYANAQRMRK
LLQLCARFHCRFDRQEQRFGLTALHLAAAAGDAPLTHWLLENGAQPMPDF
AGRMPANLTFPTFIRNAKAVARSLHPDCDLPTVDFDTHPDTARSEVRRLI
NEGEPILMRGAYNFYKHADYPPMPQLVEQFGHVNVTVGAVPYADAFNLTT
TRMTLAEYYDTIYEEAATAPSYVFNKHSQICQTAYATLSALVNDSFPLQL
IVPPDHTGGLAGIHFFLGNEQSGAPFHVHADALNAAVYGTKQWYIFTPAS
TIYSRKTISEWVREQLPSLPEEERPLQCLQRAGDVVYVPLDWGHAVLNVE
HDTFGVALELLNTRDTYAHLWR*
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mRNA from alignment at tig00000872_pilon:213482..214750+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8237.t1 ID=Ggra8237.t1|Name=Ggra8237.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1269bp|location=Sequence derived from alignment at tig00000872_pilon:213482..214750+ (Gracilaria gracilis GNS1m male)
ATGGCGCCTCCACACGTCGCGCTCGCGTTGAGCGCGCTCGTCGCCGTCGC
CTCCGTGCTGCTCGTGCTGCGCCTGCCGCCGCCCGTCGTCGACGTGCTGT
CCTTCGCCGCGCGCCACCAGTTTGCGTGGGGGTCGTCCACCACGCCCGTG
CCCATCTCCACTGTCTCCGTGTTCGCCAAGTCGCTGCTGTCGCGCGATGC
GCATGCGCTGCCGCCCGAGCTGCGCGCGCTCATTCCGCACGACGATGTGC
TCAGCTTGCAGCCTGTGCGCGACTATGCCAATGCGCAGCGAATGCGCAAA
TTGCTCCAGCTCTGTGCTCGCTTTCACTGCCGCTTCGATCGCCAGGAGCA
GCGCTTCGGCCTCACTGCGTTGCATCTCGCTGCTGCGGCGGGCGATGCGC
CGTTAACCCACTGGCTGCTTGAGAATGGCGCCCAGCCCATGCCAGACTTC
GCGGGAAGAATGCCAGCAAACCTCACCTTCCCCACGTTCATCCGCAACGC
AAAAGCTGTCGCTCGCAGCCTGCACCCCGACTGCGATTTGCCCACCGTTG
ACTTCGACACCCATCCTGACACTGCGCGCAGTGAAGTGCGCCGTCTTATC
AACGAGGGCGAACCCATTCTCATGCGCGGCGCCTACAACTTTTACAAGCA
CGCTGATTATCCCCCAATGCCACAGCTTGTCGAGCAGTTCGGCCATGTTA
ATGTCACCGTCGGTGCCGTGCCCTATGCAGATGCATTCAATCTCACTACT
ACGCGCATGACGCTTGCTGAGTATTACGATACCATATACGAAGAGGCCGC
CACCGCTCCCAGCTACGTGTTCAACAAACATTCTCAAATTTGCCAAACTG
CGTATGCCACACTTTCGGCACTTGTCAATGATTCATTTCCTCTGCAACTC
ATCGTGCCGCCGGATCACACTGGTGGTTTGGCGGGCATTCACTTCTTCTT
GGGCAATGAGCAGTCGGGAGCTCCTTTTCATGTGCACGCCGACGCTCTTA
ATGCTGCTGTGTATGGTACCAAGCAATGGTACATTTTCACCCCGGCGAGC
ACTATTTACTCCAGAAAGACTATTAGTGAGTGGGTTCGCGAACAACTCCC
GTCGCTTCCGGAGGAAGAGCGGCCACTGCAGTGTTTGCAGCGAGCGGGTG
ATGTCGTATACGTGCCCCTGGACTGGGGCCATGCCGTACTTAACGTTGAG
CATGATACCTTCGGGGTTGCGTTGGAGCTGCTTAATACTCGCGATACTTA
CGCTCACCTGTGGAGATGA
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Coding sequence (CDS) from alignment at tig00000872_pilon:213482..214750+

>Ggra8237.t1 ID=Ggra8237.t1|Name=Ggra8237.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1269bp|location=Sequence derived from alignment at tig00000872_pilon:213482..214750+ (Gracilaria gracilis GNS1m male)
ATGGCGCCTCCACACGTCGCGCTCGCGTTGAGCGCGCTCGTCGCCGTCGC
CTCCGTGCTGCTCGTGCTGCGCCTGCCGCCGCCCGTCGTCGACGTGCTGT
CCTTCGCCGCGCGCCACCAGTTTGCGTGGGGGTCGTCCACCACGCCCGTG
CCCATCTCCACTGTCTCCGTGTTCGCCAAGTCGCTGCTGTCGCGCGATGC
GCATGCGCTGCCGCCCGAGCTGCGCGCGCTCATTCCGCACGACGATGTGC
TCAGCTTGCAGCCTGTGCGCGACTATGCCAATGCGCAGCGAATGCGCAAA
TTGCTCCAGCTCTGTGCTCGCTTTCACTGCCGCTTCGATCGCCAGGAGCA
GCGCTTCGGCCTCACTGCGTTGCATCTCGCTGCTGCGGCGGGCGATGCGC
CGTTAACCCACTGGCTGCTTGAGAATGGCGCCCAGCCCATGCCAGACTTC
GCGGGAAGAATGCCAGCAAACCTCACCTTCCCCACGTTCATCCGCAACGC
AAAAGCTGTCGCTCGCAGCCTGCACCCCGACTGCGATTTGCCCACCGTTG
ACTTCGACACCCATCCTGACACTGCGCGCAGTGAAGTGCGCCGTCTTATC
AACGAGGGCGAACCCATTCTCATGCGCGGCGCCTACAACTTTTACAAGCA
CGCTGATTATCCCCCAATGCCACAGCTTGTCGAGCAGTTCGGCCATGTTA
ATGTCACCGTCGGTGCCGTGCCCTATGCAGATGCATTCAATCTCACTACT
ACGCGCATGACGCTTGCTGAGTATTACGATACCATATACGAAGAGGCCGC
CACCGCTCCCAGCTACGTGTTCAACAAACATTCTCAAATTTGCCAAACTG
CGTATGCCACACTTTCGGCACTTGTCAATGATTCATTTCCTCTGCAACTC
ATCGTGCCGCCGGATCACACTGGTGGTTTGGCGGGCATTCACTTCTTCTT
GGGCAATGAGCAGTCGGGAGCTCCTTTTCATGTGCACGCCGACGCTCTTA
ATGCTGCTGTGTATGGTACCAAGCAATGGTACATTTTCACCCCGGCGAGC
ACTATTTACTCCAGAAAGACTATTAGTGAGTGGGTTCGCGAACAACTCCC
GTCGCTTCCGGAGGAAGAGCGGCCACTGCAGTGTTTGCAGCGAGCGGGTG
ATGTCGTATACGTGCCCCTGGACTGGGGCCATGCCGTACTTAACGTTGAG
CATGATACCTTCGGGGTTGCGTTGGAGCTGCTTAATACTCGCGATACTTA
CGCTCACCTGTGGAGATGA
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