Ggra8234.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8234.t1
Unique Name	Ggra8234.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	335

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000872_pilon	contig	tig00000872_pilon:206561..207565 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3750.XP_008373409.1
PFAMs	Glyco_transf_92
Max annot lvl	35493\|Streptophyta
Evalue	2.61e-22
EggNOG OGs	COG0463@1\|root,2QTF9@2759\|Eukaryota,37N9S@33090\|Viridiplantae,3GBHN@35493\|Streptophyta,4JHVY@91835\|fabids
Description	Glycosyl transferase family 2
COG category	M

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8234	Ggra8234	Gracilaria gracilis GNS1m male	gene	tig00000872_pilon 206561..207565 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8234.t1.start1	Ggra8234.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000872_pilon 206561..206563 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8234.t1.CDS1	Ggra8234.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000872_pilon 206561..207565 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8234.t1.exon1	Ggra8234.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000872_pilon 206561..207565 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8234.t1.stop1	Ggra8234.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000872_pilon 207563..207565 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8234.t1	Ggra8234.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000872_pilon 206561..207565 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000872_pilon:206561..207565+
coding sequence from alignment at tig00000872_pilon:206561..207565+

mRNA sequence

>Ggra8234.t1 ID=Ggra8234.t1|Name=Ggra8234.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=335bp
MKDGSYVLPTDAFWEGQIDPPIQSGEGRYEVCLMTQEKLFTEYLSEWVEY
HRKLGVDHVYIYDNNASGNLSKVFENRDDIEVVYWPWYRSQIQAQNHFIL
NGRRRCQWGILIDVDEYVMVQPLNTNNEESALKSYLRSIQKETNYSQVRL
SSTVLGSSGHKFRPRVPVAEAYWHFAEKQDNLTKPIVLLGHAFPDSLVHF
VFLPKGYWTLWRSEDYHTKAGVEMKIVHMKFRAWSDYLVKGRGGRNSMAV
NVWEISPKWTIENPSPKHLRKSNRDSFTLFRSIWRRVVSQCADEEKLIRF
DEKERWHDGGKCSAHYKAHRYGFNANLVLNHIIC*

spliced messenger RNA

>Ggra8234.t1 ID=Ggra8234.t1|Name=Ggra8234.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1005bp|location=Sequence derived from alignment at tig00000872_pilon:206561..207565+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGACGGTTCTTACGTCCTGCCCACAGACGCATTTTGGGAAGGTCA
AATTGATCCGCCAATACAAAGTGGCGAAGGACGGTATGAGGTTTGTTTGA
TGACTCAAGAAAAGCTGTTTACTGAGTATCTCTCGGAATGGGTTGAGTAC
CATCGCAAGCTTGGAGTGGACCACGTATATATATACGATAACAATGCATC
TGGAAACTTAAGTAAGGTATTTGAGAACAGGGATGATATAGAAGTTGTGT
ATTGGCCTTGGTATCGCTCTCAAATCCAAGCGCAAAACCATTTCATACTG
AACGGACGTCGAAGGTGCCAATGGGGAATTCTGATCGACGTGGATGAATA
TGTAATGGTACAACCATTGAATACCAATAACGAAGAGAGTGCATTGAAGT
CATACTTGCGAAGTATACAAAAAGAAACTAATTACTCTCAAGTGAGATTA
AGCTCCACTGTGCTTGGTTCATCAGGTCATAAATTTCGACCTCGAGTTCC
TGTTGCAGAAGCATATTGGCATTTTGCTGAAAAGCAAGATAATCTAACGA
AGCCAATTGTATTGTTAGGACATGCATTTCCAGATAGCCTGGTACATTTC
GTATTTCTTCCAAAAGGTTATTGGACGCTATGGAGGTCTGAGGATTATCA
CACAAAGGCAGGGGTTGAGATGAAAATAGTTCATATGAAGTTTAGGGCAT
GGTCGGATTATCTTGTAAAAGGGCGTGGGGGACGAAATTCGATGGCAGTC
AATGTATGGGAAATTTCTCCAAAATGGACTATTGAGAATCCGTCGCCGAA
ACATCTGAGGAAAAGTAACAGAGACAGTTTCACTCTTTTTCGAAGCATAT
GGAGAAGAGTTGTATCACAATGTGCTGACGAGGAGAAGCTTATCAGATTT
GACGAGAAGGAAAGGTGGCATGACGGTGGGAAGTGCTCTGCACATTATAA
GGCCCATCGTTATGGGTTTAACGCAAATCTTGTGCTCAACCATATTATTT
GTTGA

protein sequence of Ggra8234.t1

>Ggra8234.t1 ID=Ggra8234.t1|Name=Ggra8234.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=335bp
MKDGSYVLPTDAFWEGQIDPPIQSGEGRYEVCLMTQEKLFTEYLSEWVEY
HRKLGVDHVYIYDNNASGNLSKVFENRDDIEVVYWPWYRSQIQAQNHFIL
NGRRRCQWGILIDVDEYVMVQPLNTNNEESALKSYLRSIQKETNYSQVRL
SSTVLGSSGHKFRPRVPVAEAYWHFAEKQDNLTKPIVLLGHAFPDSLVHF
VFLPKGYWTLWRSEDYHTKAGVEMKIVHMKFRAWSDYLVKGRGGRNSMAV
NVWEISPKWTIENPSPKHLRKSNRDSFTLFRSIWRRVVSQCADEEKLIRF
DEKERWHDGGKCSAHYKAHRYGFNANLVLNHIIC*

mRNA from alignment at tig00000872_pilon:206561..207565+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8234.t1 ID=Ggra8234.t1|Name=Ggra8234.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1005bp|location=Sequence derived from alignment at tig00000872_pilon:206561..207565+ (Gracilaria gracilis GNS1m male)
ATGAAGGACGGTTCTTACGTCCTGCCCACAGACGCATTTTGGGAAGGTCA
AATTGATCCGCCAATACAAAGTGGCGAAGGACGGTATGAGGTTTGTTTGA
TGACTCAAGAAAAGCTGTTTACTGAGTATCTCTCGGAATGGGTTGAGTAC
CATCGCAAGCTTGGAGTGGACCACGTATATATATACGATAACAATGCATC
TGGAAACTTAAGTAAGGTATTTGAGAACAGGGATGATATAGAAGTTGTGT
ATTGGCCTTGGTATCGCTCTCAAATCCAAGCGCAAAACCATTTCATACTG
AACGGACGTCGAAGGTGCCAATGGGGAATTCTGATCGACGTGGATGAATA
TGTAATGGTACAACCATTGAATACCAATAACGAAGAGAGTGCATTGAAGT
CATACTTGCGAAGTATACAAAAAGAAACTAATTACTCTCAAGTGAGATTA
AGCTCCACTGTGCTTGGTTCATCAGGTCATAAATTTCGACCTCGAGTTCC
TGTTGCAGAAGCATATTGGCATTTTGCTGAAAAGCAAGATAATCTAACGA
AGCCAATTGTATTGTTAGGACATGCATTTCCAGATAGCCTGGTACATTTC
GTATTTCTTCCAAAAGGTTATTGGACGCTATGGAGGTCTGAGGATTATCA
CACAAAGGCAGGGGTTGAGATGAAAATAGTTCATATGAAGTTTAGGGCAT
GGTCGGATTATCTTGTAAAAGGGCGTGGGGGACGAAATTCGATGGCAGTC
AATGTATGGGAAATTTCTCCAAAATGGACTATTGAGAATCCGTCGCCGAA
ACATCTGAGGAAAAGTAACAGAGACAGTTTCACTCTTTTTCGAAGCATAT
GGAGAAGAGTTGTATCACAATGTGCTGACGAGGAGAAGCTTATCAGATTT
GACGAGAAGGAAAGGTGGCATGACGGTGGGAAGTGCTCTGCACATTATAA
GGCCCATCGTTATGGGTTTAACGCAAATCTTGTGCTCAACCATATTATTT
GTTGA

Coding sequence (CDS) from alignment at tig00000872_pilon:206561..207565+

>Ggra8234.t1 ID=Ggra8234.t1|Name=Ggra8234.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1005bp|location=Sequence derived from alignment at tig00000872_pilon:206561..207565+ (Gracilaria gracilis GNS1m male)
ATGAAGGACGGTTCTTACGTCCTGCCCACAGACGCATTTTGGGAAGGTCA
AATTGATCCGCCAATACAAAGTGGCGAAGGACGGTATGAGGTTTGTTTGA
TGACTCAAGAAAAGCTGTTTACTGAGTATCTCTCGGAATGGGTTGAGTAC
CATCGCAAGCTTGGAGTGGACCACGTATATATATACGATAACAATGCATC
TGGAAACTTAAGTAAGGTATTTGAGAACAGGGATGATATAGAAGTTGTGT
ATTGGCCTTGGTATCGCTCTCAAATCCAAGCGCAAAACCATTTCATACTG
AACGGACGTCGAAGGTGCCAATGGGGAATTCTGATCGACGTGGATGAATA
TGTAATGGTACAACCATTGAATACCAATAACGAAGAGAGTGCATTGAAGT
CATACTTGCGAAGTATACAAAAAGAAACTAATTACTCTCAAGTGAGATTA
AGCTCCACTGTGCTTGGTTCATCAGGTCATAAATTTCGACCTCGAGTTCC
TGTTGCAGAAGCATATTGGCATTTTGCTGAAAAGCAAGATAATCTAACGA
AGCCAATTGTATTGTTAGGACATGCATTTCCAGATAGCCTGGTACATTTC
GTATTTCTTCCAAAAGGTTATTGGACGCTATGGAGGTCTGAGGATTATCA
CACAAAGGCAGGGGTTGAGATGAAAATAGTTCATATGAAGTTTAGGGCAT
GGTCGGATTATCTTGTAAAAGGGCGTGGGGGACGAAATTCGATGGCAGTC
AATGTATGGGAAATTTCTCCAAAATGGACTATTGAGAATCCGTCGCCGAA
ACATCTGAGGAAAAGTAACAGAGACAGTTTCACTCTTTTTCGAAGCATAT
GGAGAAGAGTTGTATCACAATGTGCTGACGAGGAGAAGCTTATCAGATTT
GACGAGAAGGAAAGGTGGCATGACGGTGGGAAGTGCTCTGCACATTATAA
GGCCCATCGTTATGGGTTTAACGCAAATCTTGTGCTCAACCATATTATTT
GTTGA