Ggra8230.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8230.t1
Unique NameGgra8230.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length435
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000872_piloncontigtig00000872_pilon:196715..198080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD08358
PFAMsMFS_1
Max annot lvl2759|Eukaryota
KEGG koko:K12307
KEGG TC2.A.1
KEGG Pathwayko04142,map04142
Evalue4.54e-35
EggNOG OGsKOG2325@1|root,KOG2325@2759|Eukaryota
Descriptionmajor facilitator superfamily
COG categoryO
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8230Ggra8230Gracilaria gracilis GNS1m malegenetig00000872_pilon 196715..198080 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8230.t1Ggra8230.t1Gracilaria gracilis GNS1m malepolypeptidetig00000872_pilon 196715..198080 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8230.t1.start1Ggra8230.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000872_pilon 196715..196717 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8230.t1.CDS1Ggra8230.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000872_pilon 196715..197535 +
Ggra8230.t1.CDS2Ggra8230.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000872_pilon 197597..198080 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8230.t1.exon1Ggra8230.t1.exon1Gracilaria gracilis GNS1m maleexontig00000872_pilon 196715..197535 +
Ggra8230.t1.exon2Ggra8230.t1.exon2Gracilaria gracilis GNS1m maleexontig00000872_pilon 197597..198080 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8230.t1.intron1Ggra8230.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000872_pilon 197536..197596 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8230.t1.stop1Ggra8230.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000872_pilon 198078..198080 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8230.t1 ID=Ggra8230.t1|Name=Ggra8230.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=435bp
MALSSLSRFTLYLTVFLPCVSFAIVLPSLWPYLHLLGAHKTFLAYVVAIY
SVGEAIGALYFGWLFSYLATRHVLQQASALGIVGSLLYLLAYDQPQLGKY
MLLLSRLLCGFWTGGAQSVQQAYLNDCLSKAEITTATVELNTWACLGFVA
GPGLALLFVPLPEMHVGALHIDQYTLPAWFMLISSVLCVLLYRFGLSEES
DRQQNDDDDVYNVDDMNEVGEIDETSALLPLCKKRSQQATRGSSQFSPLP
AIAVCNIAFFAHMFGFALQETVTTPLVQTYYRWTLAAADTLFTCASLATL
LTLLLLRPVSKHVSERVLTAASLALGAVGWACVAPSSLPARSFVLGFALA
SVAFPLGRACIMSLLTKLLPPGWQGRGQGVLLAVGALARIGAPFGAVQLF
YVARGSWLVFGGTAALFAASLALLAAVWSGVRTT*
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spliced messenger RNA

>Ggra8230.t1 ID=Ggra8230.t1|Name=Ggra8230.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1305bp|location=Sequence derived from alignment at tig00000872_pilon:196715..198080+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTTTCTTCCTTGTCGAGGTTCACCTTGTACCTCACCGTGTTTCT
GCCCTGCGTGTCGTTTGCCATCGTGCTGCCGTCGTTATGGCCGTACCTCC
ATCTGCTCGGCGCGCACAAGACGTTCTTGGCGTATGTGGTAGCCATCTAT
TCCGTGGGAGAGGCAATTGGTGCGCTGTACTTTGGCTGGCTGTTCTCCTA
TCTCGCCACTAGACATGTGCTTCAACAAGCAAGCGCTCTGGGAATAGTGG
GTTCGTTGTTGTATCTATTGGCGTACGACCAGCCGCAGCTCGGAAAGTAC
ATGCTGCTCCTTTCCAGACTGCTGTGCGGCTTCTGGACGGGTGGCGCACA
GTCGGTGCAACAGGCGTATCTGAACGACTGTCTATCGAAGGCGGAGATTA
CTACCGCTACGGTCGAACTCAATACGTGGGCGTGCTTGGGCTTTGTGGCG
GGTCCTGGTCTGGCGTTGCTATTCGTTCCGTTGCCCGAGATGCACGTTGG
GGCGCTTCACATCGACCAGTATACGTTGCCTGCATGGTTCATGCTTATTA
GTTCCGTGTTGTGTGTGCTGCTGTATCGGTTTGGATTGAGCGAAGAGAGT
GATAGACAGCAAAATGACGATGATGATGTTTACAATGTAGATGACATGAA
TGAGGTGGGTGAAATAGATGAAACGAGTGCCTTGTTACCCCTCTGCAAGA
AACGTTCGCAACAAGCAACGCGTGGTAGTTCGCAATTCTCGCCGCTACCC
GCGATAGCGGTGTGTAACATAGCGTTCTTCGCGCACATGTTCGGCTTCGC
GCTGCAAGAAACAGTCACCACCCCGCTGGTGCAAACGTACTACAGGTGGA
CGCTAGCAGCGGCCGACACGCTGTTCACATGCGCGTCGCTAGCGACGCTG
TTGACGCTACTGCTGCTACGGCCGGTGTCAAAGCACGTGTCGGAGCGCGT
GCTGACGGCGGCGTCGCTGGCGCTGGGCGCGGTGGGGTGGGCGTGCGTGG
CGCCGAGCTCGCTGCCGGCGCGCAGCTTCGTGCTGGGGTTCGCGCTGGCG
TCGGTGGCGTTCCCGCTCGGGCGCGCGTGCATCATGTCGCTGCTGACCAA
GCTGCTGCCGCCCGGCTGGCAGGGCCGCGGCCAGGGCGTGCTGCTGGCCG
TGGGCGCGCTCGCGCGCATCGGCGCGCCGTTCGGCGCCGTGCAGCTGTTC
TACGTCGCTCGCGGATCGTGGCTGGTGTTTGGCGGCACGGCGGCGCTGTT
CGCCGCCAGTTTGGCGCTGCTGGCCGCCGTGTGGAGCGGCGTGCGCACCA
CTTGA
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protein sequence of Ggra8230.t1

>Ggra8230.t1 ID=Ggra8230.t1|Name=Ggra8230.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=435bp
MALSSLSRFTLYLTVFLPCVSFAIVLPSLWPYLHLLGAHKTFLAYVVAIY
SVGEAIGALYFGWLFSYLATRHVLQQASALGIVGSLLYLLAYDQPQLGKY
MLLLSRLLCGFWTGGAQSVQQAYLNDCLSKAEITTATVELNTWACLGFVA
GPGLALLFVPLPEMHVGALHIDQYTLPAWFMLISSVLCVLLYRFGLSEES
DRQQNDDDDVYNVDDMNEVGEIDETSALLPLCKKRSQQATRGSSQFSPLP
AIAVCNIAFFAHMFGFALQETVTTPLVQTYYRWTLAAADTLFTCASLATL
LTLLLLRPVSKHVSERVLTAASLALGAVGWACVAPSSLPARSFVLGFALA
SVAFPLGRACIMSLLTKLLPPGWQGRGQGVLLAVGALARIGAPFGAVQLF
YVARGSWLVFGGTAALFAASLALLAAVWSGVRTT*
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mRNA from alignment at tig00000872_pilon:196715..198080+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8230.t1 ID=Ggra8230.t1|Name=Ggra8230.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1366bp|location=Sequence derived from alignment at tig00000872_pilon:196715..198080+ (Gracilaria gracilis GNS1m male)
ATGGCGCTTTCTTCCTTGTCGAGGTTCACCTTGTACCTCACCGTGTTTCT
GCCCTGCGTGTCGTTTGCCATCGTGCTGCCGTCGTTATGGCCGTACCTCC
ATCTGCTCGGCGCGCACAAGACGTTCTTGGCGTATGTGGTAGCCATCTAT
TCCGTGGGAGAGGCAATTGGTGCGCTGTACTTTGGCTGGCTGTTCTCCTA
TCTCGCCACTAGACATGTGCTTCAACAAGCAAGCGCTCTGGGAATAGTGG
GTTCGTTGTTGTATCTATTGGCGTACGACCAGCCGCAGCTCGGAAAGTAC
ATGCTGCTCCTTTCCAGACTGCTGTGCGGCTTCTGGACGGGTGGCGCACA
GTCGGTGCAACAGGCGTATCTGAACGACTGTCTATCGAAGGCGGAGATTA
CTACCGCTACGGTCGAACTCAATACGTGGGCGTGCTTGGGCTTTGTGGCG
GGTCCTGGTCTGGCGTTGCTATTCGTTCCGTTGCCCGAGATGCACGTTGG
GGCGCTTCACATCGACCAGTATACGTTGCCTGCATGGTTCATGCTTATTA
GTTCCGTGTTGTGTGTGCTGCTGTATCGGTTTGGATTGAGCGAAGAGAGT
GATAGACAGCAAAATGACGATGATGATGTTTACAATGTAGATGACATGAA
TGAGGTGGGTGAAATAGATGAAACGAGTGCCTTGTTACCCCTCTGCAAGA
AACGTTCGCAACAAGCAACGCGTGGTAGTTCGCAATTCTCGCCGCTACCC
GCGATAGCGGTGTGTAACATAGCGTTCTTCGCGCACATGTTCGGCTTCGC
GCTGCAAGAAACAGTCACCACGTACGTATCGCCCGCATGCATTCGCATCA
TAGCTCCATGACTAACCCGTGCAACAACGCAGCCCGCTGGTGCAAACGTA
CTACAGGTGGACGCTAGCAGCGGCCGACACGCTGTTCACATGCGCGTCGC
TAGCGACGCTGTTGACGCTACTGCTGCTACGGCCGGTGTCAAAGCACGTG
TCGGAGCGCGTGCTGACGGCGGCGTCGCTGGCGCTGGGCGCGGTGGGGTG
GGCGTGCGTGGCGCCGAGCTCGCTGCCGGCGCGCAGCTTCGTGCTGGGGT
TCGCGCTGGCGTCGGTGGCGTTCCCGCTCGGGCGCGCGTGCATCATGTCG
CTGCTGACCAAGCTGCTGCCGCCCGGCTGGCAGGGCCGCGGCCAGGGCGT
GCTGCTGGCCGTGGGCGCGCTCGCGCGCATCGGCGCGCCGTTCGGCGCCG
TGCAGCTGTTCTACGTCGCTCGCGGATCGTGGCTGGTGTTTGGCGGCACG
GCGGCGCTGTTCGCCGCCAGTTTGGCGCTGCTGGCCGCCGTGTGGAGCGG
CGTGCGCACCACTTGA
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Coding sequence (CDS) from alignment at tig00000872_pilon:196715..198080+

>Ggra8230.t1 ID=Ggra8230.t1|Name=Ggra8230.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1305bp|location=Sequence derived from alignment at tig00000872_pilon:196715..198080+ (Gracilaria gracilis GNS1m male)
ATGGCGCTTTCTTCCTTGTCGAGGTTCACCTTGTACCTCACCGTGTTTCT
GCCCTGCGTGTCGTTTGCCATCGTGCTGCCGTCGTTATGGCCGTACCTCC
ATCTGCTCGGCGCGCACAAGACGTTCTTGGCGTATGTGGTAGCCATCTAT
TCCGTGGGAGAGGCAATTGGTGCGCTGTACTTTGGCTGGCTGTTCTCCTA
TCTCGCCACTAGACATGTGCTTCAACAAGCAAGCGCTCTGGGAATAGTGG
GTTCGTTGTTGTATCTATTGGCGTACGACCAGCCGCAGCTCGGAAAGTAC
ATGCTGCTCCTTTCCAGACTGCTGTGCGGCTTCTGGACGGGTGGCGCACA
GTCGGTGCAACAGGCGTATCTGAACGACTGTCTATCGAAGGCGGAGATTA
CTACCGCTACGGTCGAACTCAATACGTGGGCGTGCTTGGGCTTTGTGGCG
GGTCCTGGTCTGGCGTTGCTATTCGTTCCGTTGCCCGAGATGCACGTTGG
GGCGCTTCACATCGACCAGTATACGTTGCCTGCATGGTTCATGCTTATTA
GTTCCGTGTTGTGTGTGCTGCTGTATCGGTTTGGATTGAGCGAAGAGAGT
GATAGACAGCAAAATGACGATGATGATGTTTACAATGTAGATGACATGAA
TGAGGTGGGTGAAATAGATGAAACGAGTGCCTTGTTACCCCTCTGCAAGA
AACGTTCGCAACAAGCAACGCGTGGTAGTTCGCAATTCTCGCCGCTACCC
GCGATAGCGGTGTGTAACATAGCGTTCTTCGCGCACATGTTCGGCTTCGC
GCTGCAAGAAACAGTCACCACCCCGCTGGTGCAAACGTACTACAGGTGGA
CGCTAGCAGCGGCCGACACGCTGTTCACATGCGCGTCGCTAGCGACGCTG
TTGACGCTACTGCTGCTACGGCCGGTGTCAAAGCACGTGTCGGAGCGCGT
GCTGACGGCGGCGTCGCTGGCGCTGGGCGCGGTGGGGTGGGCGTGCGTGG
CGCCGAGCTCGCTGCCGGCGCGCAGCTTCGTGCTGGGGTTCGCGCTGGCG
TCGGTGGCGTTCCCGCTCGGGCGCGCGTGCATCATGTCGCTGCTGACCAA
GCTGCTGCCGCCCGGCTGGCAGGGCCGCGGCCAGGGCGTGCTGCTGGCCG
TGGGCGCGCTCGCGCGCATCGGCGCGCCGTTCGGCGCCGTGCAGCTGTTC
TACGTCGCTCGCGGATCGTGGCTGGTGTTTGGCGGCACGGCGGCGCTGTT
CGCCGCCAGTTTGGCGCTGCTGGCCGCCGTGTGGAGCGGCGTGCGCACCA
CTTGA
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