Ggra8228.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8228.t1
Unique NameGgra8228.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length220
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000872_piloncontigtig00000872_pilon:193487..194273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8228Ggra8228Gracilaria gracilis GNS1m malegenetig00000872_pilon 193487..194273 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8228.t1Ggra8228.t1Gracilaria gracilis GNS1m malepolypeptidetig00000872_pilon 193487..194273 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8228.t1.stop1Ggra8228.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000872_pilon 193487..193489 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8228.t1.CDS1Ggra8228.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000872_pilon 193487..194096 -
Ggra8228.t1.CDS2Ggra8228.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000872_pilon 194224..194273 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8228.t1.exon1Ggra8228.t1.exon1Gracilaria gracilis GNS1m maleexontig00000872_pilon 193487..194096 -
Ggra8228.t1.exon2Ggra8228.t1.exon2Gracilaria gracilis GNS1m maleexontig00000872_pilon 194224..194273 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8228.t1.intron1Ggra8228.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000872_pilon 194097..194223 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8228.t1.start1Ggra8228.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000872_pilon 194271..194273 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8228.t1 ID=Ggra8228.t1|Name=Ggra8228.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=220bp
MFLVVDVPSRLRSSCPCFYSVRVASYVSYAYHHLVIPPITSHSPQLLRNA
FHIGPPSLHRCQRCSSSPRQHLIMLSDNQKEVIKNRVNAETDIPFLREST
ESKIIDTIIETLNPHIEPSLRQICPSPYVDCIKIALTEGIPIEERRQQIS
AILQQQLVQPLAAQLNGKLDVALVPENIEHNILLVFSRKIINEFVEWTVA
EIDERMGMTLQQSREVAGL*
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spliced messenger RNA

>Ggra8228.t1 ID=Ggra8228.t1|Name=Ggra8228.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=660bp|location=Sequence derived from alignment at tig00000872_pilon:193487..194273- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCTCGTAGTCGACGTTCCATCTCGTCTTCGGTCTTCTTGTCCATG
CTTTTATTCTGTACGCGTTGCGTCATACGTGTCGTACGCGTACCATCACC
TTGTGATCCCACCGATCACATCGCATTCCCCACAACTGCTGAGGAATGCC
TTCCACATCGGCCCCCCTTCCCTCCACCGCTGTCAGCGCTGCTCCTCATC
GCCGCGCCAACACCTCATCATGCTGTCCGACAATCAGAAGGAGGTCATCA
AGAACCGCGTCAACGCCGAGACTGACATTCCATTTCTGCGCGAGTCCACC
GAGTCCAAGATAATCGACACCATCATCGAGACGCTCAACCCGCACATCGA
GCCCTCTCTGCGTCAAATCTGCCCGTCTCCGTACGTCGACTGCATCAAAA
TCGCCCTCACCGAGGGCATTCCCATCGAAGAACGTCGTCAACAAATCTCA
GCCATTTTGCAACAACAGCTGGTTCAACCACTCGCCGCCCAACTCAACGG
CAAGTTGGACGTCGCTCTTGTGCCCGAGAACATCGAGCACAACATTCTTC
TTGTGTTTTCCCGCAAGATCATCAACGAGTTTGTTGAATGGACCGTTGCC
GAGATCGATGAACGCATGGGAATGACCTTGCAACAAAGTCGTGAGGTTGC
TGGTCTTTGA
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protein sequence of Ggra8228.t1

>Ggra8228.t1 ID=Ggra8228.t1|Name=Ggra8228.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=220bp
MFLVVDVPSRLRSSCPCFYSVRVASYVSYAYHHLVIPPITSHSPQLLRNA
FHIGPPSLHRCQRCSSSPRQHLIMLSDNQKEVIKNRVNAETDIPFLREST
ESKIIDTIIETLNPHIEPSLRQICPSPYVDCIKIALTEGIPIEERRQQIS
AILQQQLVQPLAAQLNGKLDVALVPENIEHNILLVFSRKIINEFVEWTVA
EIDERMGMTLQQSREVAGL*
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mRNA from alignment at tig00000872_pilon:193487..194273-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8228.t1 ID=Ggra8228.t1|Name=Ggra8228.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=787bp|location=Sequence derived from alignment at tig00000872_pilon:193487..194273- (Gracilaria gracilis GNS1m male)
ATGTTTCTCGTAGTCGACGTTCCATCTCGTCTTCGGTCTTCTTGTCCATG
GTAAGAGTAGATACCTATGATAGCGCTCCCGTTTCTACACCGTGGCCAGT
TGCTCACACACCTTGTCTTGCGTATGCGCGCGCTTTTCGTTCCACTCGCA
CTGACGCGCCCCCTCGTTGCGTTTCAGCTTTTATTCTGTACGCGTTGCGT
CATACGTGTCGTACGCGTACCATCACCTTGTGATCCCACCGATCACATCG
CATTCCCCACAACTGCTGAGGAATGCCTTCCACATCGGCCCCCCTTCCCT
CCACCGCTGTCAGCGCTGCTCCTCATCGCCGCGCCAACACCTCATCATGC
TGTCCGACAATCAGAAGGAGGTCATCAAGAACCGCGTCAACGCCGAGACT
GACATTCCATTTCTGCGCGAGTCCACCGAGTCCAAGATAATCGACACCAT
CATCGAGACGCTCAACCCGCACATCGAGCCCTCTCTGCGTCAAATCTGCC
CGTCTCCGTACGTCGACTGCATCAAAATCGCCCTCACCGAGGGCATTCCC
ATCGAAGAACGTCGTCAACAAATCTCAGCCATTTTGCAACAACAGCTGGT
TCAACCACTCGCCGCCCAACTCAACGGCAAGTTGGACGTCGCTCTTGTGC
CCGAGAACATCGAGCACAACATTCTTCTTGTGTTTTCCCGCAAGATCATC
AACGAGTTTGTTGAATGGACCGTTGCCGAGATCGATGAACGCATGGGAAT
GACCTTGCAACAAAGTCGTGAGGTTGCTGGTCTTTGA
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Coding sequence (CDS) from alignment at tig00000872_pilon:193487..194273-

>Ggra8228.t1 ID=Ggra8228.t1|Name=Ggra8228.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=660bp|location=Sequence derived from alignment at tig00000872_pilon:193487..194273- (Gracilaria gracilis GNS1m male)
ATGTTTCTCGTAGTCGACGTTCCATCTCGTCTTCGGTCTTCTTGTCCATG
CTTTTATTCTGTACGCGTTGCGTCATACGTGTCGTACGCGTACCATCACC
TTGTGATCCCACCGATCACATCGCATTCCCCACAACTGCTGAGGAATGCC
TTCCACATCGGCCCCCCTTCCCTCCACCGCTGTCAGCGCTGCTCCTCATC
GCCGCGCCAACACCTCATCATGCTGTCCGACAATCAGAAGGAGGTCATCA
AGAACCGCGTCAACGCCGAGACTGACATTCCATTTCTGCGCGAGTCCACC
GAGTCCAAGATAATCGACACCATCATCGAGACGCTCAACCCGCACATCGA
GCCCTCTCTGCGTCAAATCTGCCCGTCTCCGTACGTCGACTGCATCAAAA
TCGCCCTCACCGAGGGCATTCCCATCGAAGAACGTCGTCAACAAATCTCA
GCCATTTTGCAACAACAGCTGGTTCAACCACTCGCCGCCCAACTCAACGG
CAAGTTGGACGTCGCTCTTGTGCCCGAGAACATCGAGCACAACATTCTTC
TTGTGTTTTCCCGCAAGATCATCAACGAGTTTGTTGAATGGACCGTTGCC
GAGATCGATGAACGCATGGGAATGACCTTGCAACAAAGTCGTGAGGTTGC
TGGTCTTTGA
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