Ggra8210.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8210.t1
Unique NameGgra8210.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length552
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000872_piloncontigtig00000872_pilon:144409..146381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog251221.35211524
PFAMsAmidase
Max annot lvl1117|Cyanobacteria
KEGG rclassRC02756
KEGG koko:K01457
KEGG ReactionR00005
KEGG Pathwayko00220,ko00791,ko01100,ko01120,map00220,map00791,map01100,map01120
Evalue9.29e-111
EggNOG OGsCOG0154@1|root,COG0154@2|Bacteria,1G4CR@1117|Cyanobacteria
EC3.5.1.54
DescriptionAllophanate hydrolase
COG categoryJ
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8210Ggra8210Gracilaria gracilis GNS1m malegenetig00000872_pilon 144409..146381 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8210.t1Ggra8210.t1Gracilaria gracilis GNS1m malepolypeptidetig00000872_pilon 144409..146381 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8210.t1.stop1Ggra8210.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000872_pilon 144409..144411 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8210.t1.CDS1Ggra8210.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000872_pilon 144409..144623 -
Ggra8210.t1.CDS2Ggra8210.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000872_pilon 144724..144741 -
Ggra8210.t1.CDS3Ggra8210.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000872_pilon 144818..146213 -
Ggra8210.t1.CDS4Ggra8210.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000872_pilon 146355..146381 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8210.t1.exon1Ggra8210.t1.exon1Gracilaria gracilis GNS1m maleexontig00000872_pilon 144409..144623 -
Ggra8210.t1.exon2Ggra8210.t1.exon2Gracilaria gracilis GNS1m maleexontig00000872_pilon 144724..144741 -
Ggra8210.t1.exon3Ggra8210.t1.exon3Gracilaria gracilis GNS1m maleexontig00000872_pilon 144818..146213 -
Ggra8210.t1.exon4Ggra8210.t1.exon4Gracilaria gracilis GNS1m maleexontig00000872_pilon 146355..146381 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8210.t1.intron1Ggra8210.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000872_pilon 144624..144723 -
Ggra8210.t1.intron2Ggra8210.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000872_pilon 144742..144817 -
Ggra8210.t1.intron3Ggra8210.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000872_pilon 146214..146354 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8210.t1.start1Ggra8210.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000872_pilon 146379..146381 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8210.t1 ID=Ggra8210.t1|Name=Ggra8210.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=552bp
MRAAVLQHTPIMHSRLTLHSFRSSTATPAQLAAFYSHLHLRAKQTESVFI
SLSPLQQILSRLDELRTSDPNRLLPLHAVPFAVKDNIDAPPLKTTAACPA
YAYHPESAAFVVDQLEKAGAVVIGKTNMDQFACGLTGMRSPYGTPENPCN
STYIPGGSSSGSAIAVAMGLAVFALGTDTAGSGRVPAAMNDIVGLKPTKG
MLSTSGVVPAAASQDTVSIFANTVEDAAFVLHIAAKYDNVNPFSRVPPVD
KLPKLPSAIERMEDAKFTFGVPSDSFLDYRGDKTAKESFEAALEKLEMLG
GQKIDIDFLPFQEVADMLYGPLVPERYAAVGDFLEENSGREAAALNPSVF
FIIMGGKSGKAHDIFLAQEHVRRLTKCTERDTWSKVQFLVVPSVPCAVTT
LQVANDPIGLNKVLGTYTNFVNLMDLCAVAIPATWVAEGMNPEPRGITII
AQAFEENNLVRLARHFQNTIIDEDGMIGINVPLASYCLVLLEPGFRNSGF
NSAAARVYVECLSLDISDSPSDEDYSLTLRVGKRKSYVLGSHAYPCSTYK
Q*
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spliced messenger RNA

>Ggra8210.t1 ID=Ggra8210.t1|Name=Ggra8210.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1656bp|location=Sequence derived from alignment at tig00000872_pilon:144409..146381- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAGCAGCTGTATTACAGCATACTCCAATCATGCATTCGCGCCTGAC
GCTGCACTCATTTCGTTCATCCACCGCAACCCCCGCCCAACTCGCTGCCT
TCTACTCCCATCTGCATCTCCGAGCAAAGCAAACAGAGTCAGTTTTCATA
TCCTTGTCGCCTCTACAACAAATCCTCTCCCGTCTTGATGAGCTCCGCAC
ATCCGACCCCAACCGTCTGCTGCCCTTGCACGCCGTTCCGTTTGCAGTAA
AGGACAACATTGACGCCCCACCACTCAAGACCACCGCCGCCTGTCCGGCC
TACGCCTACCACCCGGAGAGCGCTGCCTTTGTCGTCGACCAACTTGAGAA
AGCTGGCGCCGTTGTCATTGGCAAGACCAACATGGATCAGTTTGCGTGTG
GACTCACCGGCATGAGATCTCCGTACGGAACTCCTGAAAATCCCTGTAAC
AGCACCTACATCCCAGGCGGTAGTTCGTCCGGCTCTGCTATTGCCGTCGC
CATGGGTCTTGCTGTCTTCGCGCTCGGAACGGATACTGCCGGTTCTGGAA
GAGTGCCGGCTGCCATGAATGACATTGTGGGCCTCAAGCCCACCAAGGGT
ATGTTGTCAACGTCTGGAGTGGTGCCAGCAGCTGCGTCACAAGATACCGT
ATCCATATTCGCCAACACTGTTGAAGATGCCGCTTTTGTGTTGCACATCG
CCGCCAAGTATGACAATGTCAATCCGTTCTCGCGTGTGCCACCAGTAGAC
AAGCTTCCGAAACTGCCATCAGCAATCGAGCGAATGGAAGATGCAAAGTT
CACCTTTGGCGTTCCGTCGGACAGCTTTCTAGACTATCGTGGTGATAAAA
CCGCCAAAGAAAGTTTTGAAGCTGCGTTGGAAAAACTGGAGATGTTGGGT
GGTCAGAAGATCGACATCGATTTCCTTCCATTTCAAGAGGTGGCAGATAT
GCTGTATGGTCCTCTCGTACCGGAAAGATATGCTGCTGTTGGTGACTTCT
TAGAAGAGAACAGTGGCCGGGAAGCTGCCGCCCTCAATCCGAGCGTTTTT
TTTATCATTATGGGTGGAAAGAGTGGCAAAGCGCACGACATTTTCCTGGC
GCAGGAGCACGTTCGCAGGTTGACCAAGTGTACCGAACGCGACACTTGGT
CAAAAGTGCAGTTCCTGGTCGTACCAAGTGTTCCGTGTGCTGTGACCACC
CTGCAGGTTGCTAATGACCCAATTGGGCTCAACAAAGTGCTCGGAACGTA
TACAAACTTTGTTAACTTGATGGACTTGTGTGCTGTGGCAATACCAGCCA
CCTGGGTAGCGGAAGGGATGAATCCGGAACCTCGTGGCATCACTATAATT
GCACAAGCATTTGAAGAAAATAACTTGGTCCGACTTGCTCGACATTTCCA
GAACACCATCATAGATGAGGATGGAATGATCGGAATTAATGTACCCTTAG
CTTCTTACTGTCTTGTCTTACTCGAACCTGGTTTCAGAAACTCTGGCTTC
AATTCTGCAGCCGCACGAGTGTACGTTGAGTGCCTTAGTTTGGATATATC
TGATTCTCCTTCTGATGAAGACTATTCATTGACGTTGCGCGTCGGAAAGA
GAAAGTCCTATGTCCTTGGGAGTCATGCGTACCCTTGTAGCACCTACAAG
CAGTAG
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protein sequence of Ggra8210.t1

>Ggra8210.t1 ID=Ggra8210.t1|Name=Ggra8210.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=552bp
MRAAVLQHTPIMHSRLTLHSFRSSTATPAQLAAFYSHLHLRAKQTESVFI
SLSPLQQILSRLDELRTSDPNRLLPLHAVPFAVKDNIDAPPLKTTAACPA
YAYHPESAAFVVDQLEKAGAVVIGKTNMDQFACGLTGMRSPYGTPENPCN
STYIPGGSSSGSAIAVAMGLAVFALGTDTAGSGRVPAAMNDIVGLKPTKG
MLSTSGVVPAAASQDTVSIFANTVEDAAFVLHIAAKYDNVNPFSRVPPVD
KLPKLPSAIERMEDAKFTFGVPSDSFLDYRGDKTAKESFEAALEKLEMLG
GQKIDIDFLPFQEVADMLYGPLVPERYAAVGDFLEENSGREAAALNPSVF
FIIMGGKSGKAHDIFLAQEHVRRLTKCTERDTWSKVQFLVVPSVPCAVTT
LQVANDPIGLNKVLGTYTNFVNLMDLCAVAIPATWVAEGMNPEPRGITII
AQAFEENNLVRLARHFQNTIIDEDGMIGINVPLASYCLVLLEPGFRNSGF
NSAAARVYVECLSLDISDSPSDEDYSLTLRVGKRKSYVLGSHAYPCSTYK
Q*
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mRNA from alignment at tig00000872_pilon:144409..146381-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8210.t1 ID=Ggra8210.t1|Name=Ggra8210.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1973bp|location=Sequence derived from alignment at tig00000872_pilon:144409..146381- (Gracilaria gracilis GNS1m male)
ATGAGAGCAGCTGTATTACAGCATACTGTACGTCACACACATCCTTACAC
TCCACCTACTGTACCTGGTCAACTCTTACTCTTCATCGTTGCTTTATCCT
CGTTCGTTCGTTCATCCTCCCCAAACCAACCACTGACCTAAACCTGCCAT
TCATATCCATCCCCTAAGCCAATCATGCATTCGCGCCTGACGCTGCACTC
ATTTCGTTCATCCACCGCAACCCCCGCCCAACTCGCTGCCTTCTACTCCC
ATCTGCATCTCCGAGCAAAGCAAACAGAGTCAGTTTTCATATCCTTGTCG
CCTCTACAACAAATCCTCTCCCGTCTTGATGAGCTCCGCACATCCGACCC
CAACCGTCTGCTGCCCTTGCACGCCGTTCCGTTTGCAGTAAAGGACAACA
TTGACGCCCCACCACTCAAGACCACCGCCGCCTGTCCGGCCTACGCCTAC
CACCCGGAGAGCGCTGCCTTTGTCGTCGACCAACTTGAGAAAGCTGGCGC
CGTTGTCATTGGCAAGACCAACATGGATCAGTTTGCGTGTGGACTCACCG
GCATGAGATCTCCGTACGGAACTCCTGAAAATCCCTGTAACAGCACCTAC
ATCCCAGGCGGTAGTTCGTCCGGCTCTGCTATTGCCGTCGCCATGGGTCT
TGCTGTCTTCGCGCTCGGAACGGATACTGCCGGTTCTGGAAGAGTGCCGG
CTGCCATGAATGACATTGTGGGCCTCAAGCCCACCAAGGGTATGTTGTCA
ACGTCTGGAGTGGTGCCAGCAGCTGCGTCACAAGATACCGTATCCATATT
CGCCAACACTGTTGAAGATGCCGCTTTTGTGTTGCACATCGCCGCCAAGT
ATGACAATGTCAATCCGTTCTCGCGTGTGCCACCAGTAGACAAGCTTCCG
AAACTGCCATCAGCAATCGAGCGAATGGAAGATGCAAAGTTCACCTTTGG
CGTTCCGTCGGACAGCTTTCTAGACTATCGTGGTGATAAAACCGCCAAAG
AAAGTTTTGAAGCTGCGTTGGAAAAACTGGAGATGTTGGGTGGTCAGAAG
ATCGACATCGATTTCCTTCCATTTCAAGAGGTGGCAGATATGCTGTATGG
TCCTCTCGTACCGGAAAGATATGCTGCTGTTGGTGACTTCTTAGAAGAGA
ACAGTGGCCGGGAAGCTGCCGCCCTCAATCCGAGCGTTTTTTTTATCATT
ATGGGTGGAAAGAGTGGCAAAGCGCACGACATTTTCCTGGCGCAGGAGCA
CGTTCGCAGGTTGACCAAGTGTACCGAACGCGACACTTGGTCAAAAGTGC
AGTTCCTGGTCGTACCAAGTGTTCCGTGTGCTGTGACCACCCTGCAGGTT
GCTAATGACCCAATTGGGCTCAACAAAGTGCTCGGAACGTATACAAACTT
TGTTAACTTGATGGACTTGTGTGCTGTGGCAATACCAGCCACCTGGGTAG
CGGAAGGGATGAATCCGGAACCTCGTGGCATCACTATAATTGCACAAGCA
TTTGAAGAAAATAACTTGGTCCGACTTGCTCGACATTTCCAGAACACCAT
CATAGATGAGGATGGTTTCGTGCAAGAATCATAGCACTTGAATAAGGGCG
TGAAATGGGTCATCTTTCGGATTTTCGTCACTCTAAACAGGAATGATCGG
AATTAATGGTATGACAAATCCTTTACCATTCTATGCTTTTTCGTTCATAC
ATGGTTATTGGAGTGCAATTAACATCATCTAACTTGGCAGAGTATAAATT
TTGTTCAGTACCCTTAGCTTCTTACTGTCTTGTCTTACTCGAACCTGGTT
TCAGAAACTCTGGCTTCAATTCTGCAGCCGCACGAGTGTACGTTGAGTGC
CTTAGTTTGGATATATCTGATTCTCCTTCTGATGAAGACTATTCATTGAC
GTTGCGCGTCGGAAAGAGAAAGTCCTATGTCCTTGGGAGTCATGCGTACC
CTTGTAGCACCTACAAGCAGTAG
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Coding sequence (CDS) from alignment at tig00000872_pilon:144409..146381-

>Ggra8210.t1 ID=Ggra8210.t1|Name=Ggra8210.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1656bp|location=Sequence derived from alignment at tig00000872_pilon:144409..146381- (Gracilaria gracilis GNS1m male)
ATGAGAGCAGCTGTATTACAGCATACTCCAATCATGCATTCGCGCCTGAC
GCTGCACTCATTTCGTTCATCCACCGCAACCCCCGCCCAACTCGCTGCCT
TCTACTCCCATCTGCATCTCCGAGCAAAGCAAACAGAGTCAGTTTTCATA
TCCTTGTCGCCTCTACAACAAATCCTCTCCCGTCTTGATGAGCTCCGCAC
ATCCGACCCCAACCGTCTGCTGCCCTTGCACGCCGTTCCGTTTGCAGTAA
AGGACAACATTGACGCCCCACCACTCAAGACCACCGCCGCCTGTCCGGCC
TACGCCTACCACCCGGAGAGCGCTGCCTTTGTCGTCGACCAACTTGAGAA
AGCTGGCGCCGTTGTCATTGGCAAGACCAACATGGATCAGTTTGCGTGTG
GACTCACCGGCATGAGATCTCCGTACGGAACTCCTGAAAATCCCTGTAAC
AGCACCTACATCCCAGGCGGTAGTTCGTCCGGCTCTGCTATTGCCGTCGC
CATGGGTCTTGCTGTCTTCGCGCTCGGAACGGATACTGCCGGTTCTGGAA
GAGTGCCGGCTGCCATGAATGACATTGTGGGCCTCAAGCCCACCAAGGGT
ATGTTGTCAACGTCTGGAGTGGTGCCAGCAGCTGCGTCACAAGATACCGT
ATCCATATTCGCCAACACTGTTGAAGATGCCGCTTTTGTGTTGCACATCG
CCGCCAAGTATGACAATGTCAATCCGTTCTCGCGTGTGCCACCAGTAGAC
AAGCTTCCGAAACTGCCATCAGCAATCGAGCGAATGGAAGATGCAAAGTT
CACCTTTGGCGTTCCGTCGGACAGCTTTCTAGACTATCGTGGTGATAAAA
CCGCCAAAGAAAGTTTTGAAGCTGCGTTGGAAAAACTGGAGATGTTGGGT
GGTCAGAAGATCGACATCGATTTCCTTCCATTTCAAGAGGTGGCAGATAT
GCTGTATGGTCCTCTCGTACCGGAAAGATATGCTGCTGTTGGTGACTTCT
TAGAAGAGAACAGTGGCCGGGAAGCTGCCGCCCTCAATCCGAGCGTTTTT
TTTATCATTATGGGTGGAAAGAGTGGCAAAGCGCACGACATTTTCCTGGC
GCAGGAGCACGTTCGCAGGTTGACCAAGTGTACCGAACGCGACACTTGGT
CAAAAGTGCAGTTCCTGGTCGTACCAAGTGTTCCGTGTGCTGTGACCACC
CTGCAGGTTGCTAATGACCCAATTGGGCTCAACAAAGTGCTCGGAACGTA
TACAAACTTTGTTAACTTGATGGACTTGTGTGCTGTGGCAATACCAGCCA
CCTGGGTAGCGGAAGGGATGAATCCGGAACCTCGTGGCATCACTATAATT
GCACAAGCATTTGAAGAAAATAACTTGGTCCGACTTGCTCGACATTTCCA
GAACACCATCATAGATGAGGATGGAATGATCGGAATTAATGTACCCTTAG
CTTCTTACTGTCTTGTCTTACTCGAACCTGGTTTCAGAAACTCTGGCTTC
AATTCTGCAGCCGCACGAGTGTACGTTGAGTGCCTTAGTTTGGATATATC
TGATTCTCCTTCTGATGAAGACTATTCATTGACGTTGCGCGTCGGAAAGA
GAAAGTCCTATGTCCTTGGGAGTCATGCGTACCCTTGTAGCACCTACAAG
CAGTAG
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