Ggra8189.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8189.t1
Unique NameGgra8189.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length198
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000872_piloncontigtig00000872_pilon:65495..66216 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44689.DDB0238565
PFAMsY_phosphatase2
Max annot lvl2759|Eukaryota
KEGG koko:K18045
Evalue5.29e-77
EggNOG OGsCOG2365@1|root,KOG1572@2759|Eukaryota
EC3.1.3.48
Descriptionprotein tyrosine phosphatase activity
COG categoryT
BRITEko00000,ko01000,ko01009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8189Ggra8189Gracilaria gracilis GNS1m malegenetig00000872_pilon 65495..66216 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8189.t1Ggra8189.t1Gracilaria gracilis GNS1m malepolypeptidetig00000872_pilon 65495..66216 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8189.t1.stop1Ggra8189.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000872_pilon 65495..65497 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8189.t1.CDS1Ggra8189.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000872_pilon 65495..65752 -
Ggra8189.t1.CDS2Ggra8189.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000872_pilon 65881..66216 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8189.t1.exon1Ggra8189.t1.exon1Gracilaria gracilis GNS1m maleexontig00000872_pilon 65495..65752 -
Ggra8189.t1.exon2Ggra8189.t1.exon2Gracilaria gracilis GNS1m maleexontig00000872_pilon 65881..66216 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8189.t1.intron1Ggra8189.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000872_pilon 65753..65880 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8189.t1.start1Ggra8189.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000872_pilon 66214..66216 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8189.t1 ID=Ggra8189.t1|Name=Ggra8189.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=198bp
MSVSPPLTVAHNHHLHDASDKVPGEKMKMRTEMEPVIPPLNFAMVTPGVY
RSGYPKTFNHSFLKSLGLKTLIYLCPEDCNEQNLAFYKENDINVMQFGIP
GNKEPFTDIPEPVIRDALEVLLDVRRHPLLIHCNKGKHRTGCLVGCLRKV
QRWSLTSIFDEYRRFAGNKTRILDQQFIELFQTSLVRYNVTYKPSWL*
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spliced messenger RNA

>Ggra8189.t1 ID=Ggra8189.t1|Name=Ggra8189.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=594bp|location=Sequence derived from alignment at tig00000872_pilon:65495..66216- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGTGTCGCCCCCATTGACGGTTGCTCACAATCATCATCTTCATGA
TGCGTCGGACAAGGTCCCCGGCGAAAAGATGAAGATGCGCACTGAAATGG
AGCCAGTTATTCCACCGCTCAACTTCGCAATGGTAACCCCCGGCGTTTAT
CGCTCTGGCTATCCGAAGACGTTCAATCACTCGTTCCTCAAGTCCCTCGG
ACTCAAGACGCTCATCTACTTGTGCCCGGAGGACTGTAACGAGCAGAACC
TCGCCTTCTACAAAGAAAACGATATAAACGTTATGCAGTTCGGAATCCCC
GGCAATAAGGAGCCATTTACAGACATTCCTGAGCCGGTTATTCGTGATGC
GTTGGAGGTCTTGCTCGACGTCAGACGCCATCCGCTATTGATTCACTGTA
ATAAGGGAAAGCATCGAACGGGATGTCTCGTGGGCTGCCTTCGAAAGGTC
CAGCGATGGTCGCTCACTTCAATCTTTGACGAGTATCGTCGTTTTGCTGG
CAATAAGACTCGAATATTGGATCAGCAATTCATTGAACTCTTTCAGACTT
CTTTGGTACGTTACAACGTGACTTACAAGCCCTCTTGGCTGTAA
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protein sequence of Ggra8189.t1

>Ggra8189.t1 ID=Ggra8189.t1|Name=Ggra8189.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=198bp
MSVSPPLTVAHNHHLHDASDKVPGEKMKMRTEMEPVIPPLNFAMVTPGVY
RSGYPKTFNHSFLKSLGLKTLIYLCPEDCNEQNLAFYKENDINVMQFGIP
GNKEPFTDIPEPVIRDALEVLLDVRRHPLLIHCNKGKHRTGCLVGCLRKV
QRWSLTSIFDEYRRFAGNKTRILDQQFIELFQTSLVRYNVTYKPSWL*
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mRNA from alignment at tig00000872_pilon:65495..66216-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8189.t1 ID=Ggra8189.t1|Name=Ggra8189.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=722bp|location=Sequence derived from alignment at tig00000872_pilon:65495..66216- (Gracilaria gracilis GNS1m male)
ATGAGCGTGTCGCCCCCATTGACGGTTGCTCACAATCATCATCTTCATGA
TGCGTCGGACAAGGTCCCCGGCGAAAAGATGAAGATGCGCACTGAAATGG
AGCCAGTTATTCCACCGCTCAACTTCGCAATGGTAACCCCCGGCGTTTAT
CGCTCTGGCTATCCGAAGACGTTCAATCACTCGTTCCTCAAGTCCCTCGG
ACTCAAGACGCTCATCTACTTGTGCCCGGAGGACTGTAACGAGCAGAACC
TCGCCTTCTACAAAGAAAACGATATAAACGTTATGCAGTTCGGAATCCCC
GGCAATAAGGAGCCATTTACAGACATTCCTGAGCCGGTACGTTTTCAAGA
AATGACGCATTTTCGCTCCATAGCTAGCTGTGGCTAACGAAAGCGTTCGC
TCTGCTCGTGGCGGGTACTCATTTGCTTCGTGCAAACTTTTTGAAACTGC
TTCAATGCGTATAGGTTATTCGTGATGCGTTGGAGGTCTTGCTCGACGTC
AGACGCCATCCGCTATTGATTCACTGTAATAAGGGAAAGCATCGAACGGG
ATGTCTCGTGGGCTGCCTTCGAAAGGTCCAGCGATGGTCGCTCACTTCAA
TCTTTGACGAGTATCGTCGTTTTGCTGGCAATAAGACTCGAATATTGGAT
CAGCAATTCATTGAACTCTTTCAGACTTCTTTGGTACGTTACAACGTGAC
TTACAAGCCCTCTTGGCTGTAA
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Coding sequence (CDS) from alignment at tig00000872_pilon:65495..66216-

>Ggra8189.t1 ID=Ggra8189.t1|Name=Ggra8189.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=594bp|location=Sequence derived from alignment at tig00000872_pilon:65495..66216- (Gracilaria gracilis GNS1m male)
ATGAGCGTGTCGCCCCCATTGACGGTTGCTCACAATCATCATCTTCATGA
TGCGTCGGACAAGGTCCCCGGCGAAAAGATGAAGATGCGCACTGAAATGG
AGCCAGTTATTCCACCGCTCAACTTCGCAATGGTAACCCCCGGCGTTTAT
CGCTCTGGCTATCCGAAGACGTTCAATCACTCGTTCCTCAAGTCCCTCGG
ACTCAAGACGCTCATCTACTTGTGCCCGGAGGACTGTAACGAGCAGAACC
TCGCCTTCTACAAAGAAAACGATATAAACGTTATGCAGTTCGGAATCCCC
GGCAATAAGGAGCCATTTACAGACATTCCTGAGCCGGTTATTCGTGATGC
GTTGGAGGTCTTGCTCGACGTCAGACGCCATCCGCTATTGATTCACTGTA
ATAAGGGAAAGCATCGAACGGGATGTCTCGTGGGCTGCCTTCGAAAGGTC
CAGCGATGGTCGCTCACTTCAATCTTTGACGAGTATCGTCGTTTTGCTGG
CAATAAGACTCGAATATTGGATCAGCAATTCATTGAACTCTTTCAGACTT
CTTTGGTACGTTACAACGTGACTTACAAGCCCTCTTGGCTGTAA
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