Ggra8187.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8187.t1
Unique NameGgra8187.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length121
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000872_piloncontigtig00000872_pilon:62521..62883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr35895
Max annot lvl2759|Eukaryota
Evalue3.76e-09
EggNOG OGs28KV4@1|root,2QTBH@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8187Ggra8187Gracilaria gracilis GNS1m malegenetig00000872_pilon 62521..63267 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8187.t1.stop1Ggra8187.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000872_pilon 62521..62523 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8187.t1.CDS1Ggra8187.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000872_pilon 62521..62883 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8187.t1.exon1Ggra8187.t1.exon1Gracilaria gracilis GNS1m maleexontig00000872_pilon 62521..62883 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8187.t1.start1Ggra8187.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000872_pilon 62881..62883 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8187.t1Ggra8187.t1Gracilaria gracilis GNS1m malepolypeptidetig00000872_pilon 62521..62883 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8187.t1 ID=Ggra8187.t1|Name=Ggra8187.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=121bp
MALWDIQMLARTGFPAVADEVKPPGMEEIGVIALQQALNGPMKAMARIYR
SSRGISWITNFDDPVRQERHLQKVATKNSRGEEIMQMLGLQEKAMRPLVE
IHFTTFVKSIVSTSDYERQG*
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spliced messenger RNA

>Ggra8187.t1 ID=Ggra8187.t1|Name=Ggra8187.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=363bp|location=Sequence derived from alignment at tig00000872_pilon:62521..62883- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACTCTGGGATATCCAAATGCTTGCAAGGACTGGATTTCCTGCTGT
TGCAGATGAAGTTAAACCTCCTGGAATGGAAGAGATCGGAGTGATAGCCC
TTCAGCAAGCGCTAAATGGACCGATGAAAGCCATGGCCCGGATTTATCGC
AGTTCACGGGGTATCAGCTGGATCACTAACTTCGATGATCCAGTGAGGCA
GGAACGGCATTTGCAGAAGGTGGCAACTAAGAATTCCCGAGGAGAAGAAA
TCATGCAGATGCTTGGATTGCAAGAGAAAGCCATGCGCCCGTTGGTAGAG
ATTCATTTCACCACTTTTGTGAAGAGTATTGTTTCCACCTCTGACTATGA
AAGACAAGGCTAA
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protein sequence of Ggra8187.t1

>Ggra8187.t1 ID=Ggra8187.t1|Name=Ggra8187.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=121bp
MALWDIQMLARTGFPAVADEVKPPGMEEIGVIALQQALNGPMKAMARIYR
SSRGISWITNFDDPVRQERHLQKVATKNSRGEEIMQMLGLQEKAMRPLVE
IHFTTFVKSIVSTSDYERQG*
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mRNA from alignment at tig00000872_pilon:62521..62883-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8187.t1 ID=Ggra8187.t1|Name=Ggra8187.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=363bp|location=Sequence derived from alignment at tig00000872_pilon:62521..62883- (Gracilaria gracilis GNS1m male)
ATGGCACTCTGGGATATCCAAATGCTTGCAAGGACTGGATTTCCTGCTGT
TGCAGATGAAGTTAAACCTCCTGGAATGGAAGAGATCGGAGTGATAGCCC
TTCAGCAAGCGCTAAATGGACCGATGAAAGCCATGGCCCGGATTTATCGC
AGTTCACGGGGTATCAGCTGGATCACTAACTTCGATGATCCAGTGAGGCA
GGAACGGCATTTGCAGAAGGTGGCAACTAAGAATTCCCGAGGAGAAGAAA
TCATGCAGATGCTTGGATTGCAAGAGAAAGCCATGCGCCCGTTGGTAGAG
ATTCATTTCACCACTTTTGTGAAGAGTATTGTTTCCACCTCTGACTATGA
AAGACAAGGCTAA
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Coding sequence (CDS) from alignment at tig00000872_pilon:62521..62883-

>Ggra8187.t1 ID=Ggra8187.t1|Name=Ggra8187.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=363bp|location=Sequence derived from alignment at tig00000872_pilon:62521..62883- (Gracilaria gracilis GNS1m male)
ATGGCACTCTGGGATATCCAAATGCTTGCAAGGACTGGATTTCCTGCTGT
TGCAGATGAAGTTAAACCTCCTGGAATGGAAGAGATCGGAGTGATAGCCC
TTCAGCAAGCGCTAAATGGACCGATGAAAGCCATGGCCCGGATTTATCGC
AGTTCACGGGGTATCAGCTGGATCACTAACTTCGATGATCCAGTGAGGCA
GGAACGGCATTTGCAGAAGGTGGCAACTAAGAATTCCCGAGGAGAAGAAA
TCATGCAGATGCTTGGATTGCAAGAGAAAGCCATGCGCCCGTTGGTAGAG
ATTCATTTCACCACTTTTGTGAAGAGTATTGTTTCCACCTCTGACTATGA
AAGACAAGGCTAA
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