Ggra8169.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8169.t2
Unique NameGgra8169.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length350
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000872_piloncontigtig00000872_pilon:32415..33566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8169Ggra8169Gracilaria gracilis GNS1m malegenetig00000872_pilon 32415..33566 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8169.t2Ggra8169.t2Gracilaria gracilis GNS1m malepolypeptidetig00000872_pilon 32415..33566 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8169.t2.start1Ggra8169.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000872_pilon 32415..32417 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8169.t2.CDS1Ggra8169.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000872_pilon 32415..32616 +
Ggra8169.t2.CDS2Ggra8169.t2.CDS2Gracilaria gracilis GNS1m maleCDStig00000872_pilon 32719..33566 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8169.t2.exon1Ggra8169.t2.exon1Gracilaria gracilis GNS1m maleexontig00000872_pilon 32415..32616 +
Ggra8169.t2.exon2Ggra8169.t2.exon2Gracilaria gracilis GNS1m maleexontig00000872_pilon 32719..33566 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8169.t2.intron1Ggra8169.t2.intron1Gracilaria gracilis GNS1m maleintrontig00000872_pilon 32617..32718 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8169.t2.stop1Ggra8169.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000872_pilon 33564..33566 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8169.t2 ID=Ggra8169.t2|Name=Ggra8169.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=350bp
MEEHSDQEDVDVFVSPKRFGGHTPAAKAIKQKVFEDNLKRAAQETQSQRD
KQFSTESAPSVPGYYEEADEDPAKGVHRKVARNNRLSIAALIANYIASFL
ALPILGVGIWVALKQRNGGITTYTARAGHVVKSPLALGLLLIFGAGFLLI
FSLFFGVRHLSPSINEGLGPEKRKTFLAYQFLALGTMAILTIVLLSTVDP
LRHVKTYGVTKTRWIEMSLLNPARICRYEIENDCAGYRNMSCADPSARAN
RACPGHFCSDTCRAGSSEPPRLKLKGCEACYKAFQTDRPLQRCKANEGSG
VSSVACLASLKSDLLVFFTLSIIASSTGLIVLFFVTVLGAVSSLISFEL*
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spliced messenger RNA

>Ggra8169.t2 ID=Ggra8169.t2|Name=Ggra8169.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1050bp|location=Sequence derived from alignment at tig00000872_pilon:32415..33566+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGAACATAGTGATCAAGAAGATGTTGATGTCTTCGTGAGCCCTAA
AAGATTCGGGGGTCACACTCCCGCGGCCAAGGCCATTAAGCAAAAGGTGT
TTGAGGATAATCTCAAACGAGCTGCTCAAGAAACTCAATCACAAAGAGAC
AAACAATTCAGTACGGAATCTGCCCCATCTGTCCCCGGATACTATGAAGA
AGCGGATGAAGACCCTGCTAAAGGTGTTCATCGCAAAGTTGCGAGGAATA
ACAGACTTAGCATCGCAGCGCTCATTGCAAACTATATTGCAAGCTTTCTA
GCCTTGCCTATATTAGGTGTGGGAATATGGGTTGCGCTCAAGCAACGAAA
CGGAGGAATTACGACGTACACTGCAAGAGCAGGTCACGTTGTTAAGTCTC
CACTGGCCTTAGGGCTATTGCTAATCTTTGGAGCCGGATTCCTATTGATT
TTTTCTCTCTTCTTTGGAGTTCGTCATCTTTCTCCCTCGATAAATGAAGG
CTTAGGACCGGAGAAGAGGAAGACTTTCCTGGCTTATCAATTTCTGGCAC
TTGGTACCATGGCTATCTTGACTATTGTTTTGCTCTCAACCGTCGATCCT
CTGCGACACGTCAAAACTTATGGAGTCACTAAAACAAGATGGATTGAGAT
GTCACTTCTCAACCCCGCGAGGATATGCCGCTATGAGATTGAGAACGATT
GTGCAGGGTATAGAAACATGTCGTGCGCGGATCCGTCAGCAAGGGCAAAT
CGAGCGTGCCCAGGGCATTTCTGTAGTGACACTTGTCGTGCTGGGTCTAG
CGAACCTCCCAGACTGAAGCTGAAGGGATGTGAAGCATGCTACAAAGCCT
TCCAAACGGACCGGCCACTGCAGAGATGCAAAGCAAATGAAGGAAGTGGT
GTATCCTCGGTGGCCTGTTTAGCATCTCTCAAGAGCGACTTGTTGGTTTT
CTTCACTTTGTCAATCATTGCTTCCAGTACAGGGCTGATTGTATTGTTTT
TCGTGACGGTCCTCGGTGCCGTGAGCTCTCTAATTAGCTTTGAGTTGTAA
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protein sequence of Ggra8169.t2

>Ggra8169.t2 ID=Ggra8169.t2|Name=Ggra8169.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=350bp
MEEHSDQEDVDVFVSPKRFGGHTPAAKAIKQKVFEDNLKRAAQETQSQRD
KQFSTESAPSVPGYYEEADEDPAKGVHRKVARNNRLSIAALIANYIASFL
ALPILGVGIWVALKQRNGGITTYTARAGHVVKSPLALGLLLIFGAGFLLI
FSLFFGVRHLSPSINEGLGPEKRKTFLAYQFLALGTMAILTIVLLSTVDP
LRHVKTYGVTKTRWIEMSLLNPARICRYEIENDCAGYRNMSCADPSARAN
RACPGHFCSDTCRAGSSEPPRLKLKGCEACYKAFQTDRPLQRCKANEGSG
VSSVACLASLKSDLLVFFTLSIIASSTGLIVLFFVTVLGAVSSLISFEL*
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mRNA from alignment at tig00000872_pilon:32415..33566+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8169.t2 ID=Ggra8169.t2|Name=Ggra8169.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1152bp|location=Sequence derived from alignment at tig00000872_pilon:32415..33566+ (Gracilaria gracilis GNS1m male)
ATGGAAGAACATAGTGATCAAGAAGATGTTGATGTCTTCGTGAGCCCTAA
AAGATTCGGGGGTCACACTCCCGCGGCCAAGGCCATTAAGCAAAAGGTGT
TTGAGGATAATCTCAAACGAGCTGCTCAAGAAACTCAATCACAAAGAGAC
AAACAATTCAGTACGGAATCTGCCCCATCTGTCCCCGGATACTATGAAGA
AGGTAAGTCGATCGCATCATCATTTGCGAGAGGACCATACTGCAGAGCTT
GAGATGACCTTGTTCAGGTGTAGCTGACTTGTTGCTGTGAAAATACACAT
CAAGCGGATGAAGACCCTGCTAAAGGTGTTCATCGCAAAGTTGCGAGGAA
TAACAGACTTAGCATCGCAGCGCTCATTGCAAACTATATTGCAAGCTTTC
TAGCCTTGCCTATATTAGGTGTGGGAATATGGGTTGCGCTCAAGCAACGA
AACGGAGGAATTACGACGTACACTGCAAGAGCAGGTCACGTTGTTAAGTC
TCCACTGGCCTTAGGGCTATTGCTAATCTTTGGAGCCGGATTCCTATTGA
TTTTTTCTCTCTTCTTTGGAGTTCGTCATCTTTCTCCCTCGATAAATGAA
GGCTTAGGACCGGAGAAGAGGAAGACTTTCCTGGCTTATCAATTTCTGGC
ACTTGGTACCATGGCTATCTTGACTATTGTTTTGCTCTCAACCGTCGATC
CTCTGCGACACGTCAAAACTTATGGAGTCACTAAAACAAGATGGATTGAG
ATGTCACTTCTCAACCCCGCGAGGATATGCCGCTATGAGATTGAGAACGA
TTGTGCAGGGTATAGAAACATGTCGTGCGCGGATCCGTCAGCAAGGGCAA
ATCGAGCGTGCCCAGGGCATTTCTGTAGTGACACTTGTCGTGCTGGGTCT
AGCGAACCTCCCAGACTGAAGCTGAAGGGATGTGAAGCATGCTACAAAGC
CTTCCAAACGGACCGGCCACTGCAGAGATGCAAAGCAAATGAAGGAAGTG
GTGTATCCTCGGTGGCCTGTTTAGCATCTCTCAAGAGCGACTTGTTGGTT
TTCTTCACTTTGTCAATCATTGCTTCCAGTACAGGGCTGATTGTATTGTT
TTTCGTGACGGTCCTCGGTGCCGTGAGCTCTCTAATTAGCTTTGAGTTGT
AA
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Coding sequence (CDS) from alignment at tig00000872_pilon:32415..33566+

>Ggra8169.t2 ID=Ggra8169.t2|Name=Ggra8169.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1050bp|location=Sequence derived from alignment at tig00000872_pilon:32415..33566+ (Gracilaria gracilis GNS1m male)
ATGGAAGAACATAGTGATCAAGAAGATGTTGATGTCTTCGTGAGCCCTAA
AAGATTCGGGGGTCACACTCCCGCGGCCAAGGCCATTAAGCAAAAGGTGT
TTGAGGATAATCTCAAACGAGCTGCTCAAGAAACTCAATCACAAAGAGAC
AAACAATTCAGTACGGAATCTGCCCCATCTGTCCCCGGATACTATGAAGA
AGCGGATGAAGACCCTGCTAAAGGTGTTCATCGCAAAGTTGCGAGGAATA
ACAGACTTAGCATCGCAGCGCTCATTGCAAACTATATTGCAAGCTTTCTA
GCCTTGCCTATATTAGGTGTGGGAATATGGGTTGCGCTCAAGCAACGAAA
CGGAGGAATTACGACGTACACTGCAAGAGCAGGTCACGTTGTTAAGTCTC
CACTGGCCTTAGGGCTATTGCTAATCTTTGGAGCCGGATTCCTATTGATT
TTTTCTCTCTTCTTTGGAGTTCGTCATCTTTCTCCCTCGATAAATGAAGG
CTTAGGACCGGAGAAGAGGAAGACTTTCCTGGCTTATCAATTTCTGGCAC
TTGGTACCATGGCTATCTTGACTATTGTTTTGCTCTCAACCGTCGATCCT
CTGCGACACGTCAAAACTTATGGAGTCACTAAAACAAGATGGATTGAGAT
GTCACTTCTCAACCCCGCGAGGATATGCCGCTATGAGATTGAGAACGATT
GTGCAGGGTATAGAAACATGTCGTGCGCGGATCCGTCAGCAAGGGCAAAT
CGAGCGTGCCCAGGGCATTTCTGTAGTGACACTTGTCGTGCTGGGTCTAG
CGAACCTCCCAGACTGAAGCTGAAGGGATGTGAAGCATGCTACAAAGCCT
TCCAAACGGACCGGCCACTGCAGAGATGCAAAGCAAATGAAGGAAGTGGT
GTATCCTCGGTGGCCTGTTTAGCATCTCTCAAGAGCGACTTGTTGGTTTT
CTTCACTTTGTCAATCATTGCTTCCAGTACAGGGCTGATTGTATTGTTTT
TCGTGACGGTCCTCGGTGCCGTGAGCTCTCTAATTAGCTTTGAGTTGTAA
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