Ggra8166.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8166.t1
Unique NameGgra8166.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length455
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000872_piloncontigtig00000872_pilon:21615..23510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709068.1
PFAMsAminotran_1_2
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00039,RC02725
KEGG koko:K00652
KEGG ReactionR03210,R10124
KEGG Pathwayko00780,ko01100,map00780,map01100
KEGG ModuleM00123,M00573,M00577
Evalue5.8e-97
EggNOG OGsCOG0156@1|root,KOG1360@2759|Eukaryota
EC2.3.1.47
Description5-aminolevulinate synthase activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8166Ggra8166Gracilaria gracilis GNS1m malegenetig00000872_pilon 21615..23510 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8166.t1Ggra8166.t1Gracilaria gracilis GNS1m malepolypeptidetig00000872_pilon 21615..23510 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8166.t1.stop1Ggra8166.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000872_pilon 21615..21617 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8166.t1.CDS1Ggra8166.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000872_pilon 21615..22862 -
Ggra8166.t1.CDS2Ggra8166.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000872_pilon 23311..23327 -
Ggra8166.t1.CDS3Ggra8166.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000872_pilon 23411..23510 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8166.t1.exon1Ggra8166.t1.exon1Gracilaria gracilis GNS1m maleexontig00000872_pilon 21615..22862 -
Ggra8166.t1.exon2Ggra8166.t1.exon2Gracilaria gracilis GNS1m maleexontig00000872_pilon 23311..23327 -
Ggra8166.t1.exon3Ggra8166.t1.exon3Gracilaria gracilis GNS1m maleexontig00000872_pilon 23411..23510 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8166.t1.intron1Ggra8166.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000872_pilon 22863..23310 -
Ggra8166.t1.intron2Ggra8166.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000872_pilon 23328..23410 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8166.t1.start1Ggra8166.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000872_pilon 23508..23510 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8166.t1 ID=Ggra8166.t1|Name=Ggra8166.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=455bp
MSRKQIGLSLPSISEMCEDSKASVDSDDCWSTNNRGLLCHFSVPFVLTMK
GLHERIQDVLQVRKRNGALRQLRVPLSTASDFSSNDYLGFSRNDTCQSFV
KQFISNHPRCVPTGSTGSRLLSGHSRDLEVFENTAALFHHSEDALLFNSG
YNANISLFATVPSAEDAIVYDQFIHASVHDGMRMSRARQNLFSFRHNSVE
AMEAEIRMAASIVTGSVVVCVESVYSMDGDIAPIADMLRVLKSLQLEVSR
EFYLIVDEAHSGGLYGPNGEGLCVHLNLERHPNLFARVITYGKAFAGHGA
VILGSSTLKTYLINYARPLIYSTALSPHSVVALQALYEFMKSAEAQKART
RLWNLVDHFYRCMREFLPSNPVPHHELRTPIGGIMIAGNIKCVRIAEKLV
DRGFDVYPIRSPTVPRGLERIRIIIHAHNDYEEIKRLVRAIAQALEDDQA
RPKL*
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spliced messenger RNA

>Ggra8166.t1 ID=Ggra8166.t1|Name=Ggra8166.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1365bp|location=Sequence derived from alignment at tig00000872_pilon:21615..23510- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGGAAACAGATTGGGTTGAGCCTTCCCAGCATTTCTGAGATGTG
CGAGGACAGCAAAGCCAGTGTTGACTCTGATGACTGCTGGTCAACAAACA
ATAGAGGACTTCTCTGTCACTTTTCTGTTCCCTTTGTGCTCACCATGAAA
GGGTTGCATGAACGAATTCAGGACGTGCTTCAAGTCAGAAAAAGAAATGG
TGCTCTTCGTCAACTTCGTGTTCCTCTTTCCACTGCTAGCGACTTTTCAT
CAAACGATTACTTGGGCTTCTCACGAAACGATACTTGCCAAAGCTTTGTC
AAGCAGTTCATTTCTAATCATCCCCGCTGTGTCCCTACGGGTTCAACAGG
ATCACGCTTGTTATCTGGCCATTCAAGAGATTTAGAGGTGTTTGAAAACA
CTGCTGCTCTATTTCACCATTCCGAAGATGCGCTTCTCTTTAACTCCGGA
TACAATGCGAACATATCTCTTTTTGCAACTGTTCCTTCTGCGGAAGACGC
CATCGTTTACGATCAGTTTATTCATGCTTCGGTGCATGACGGTATGCGCA
TGAGTAGAGCGCGACAGAACTTGTTCTCATTTCGACACAATAGTGTGGAA
GCCATGGAGGCTGAGATTCGAATGGCTGCTTCTATAGTTACAGGCAGCGT
GGTTGTCTGTGTAGAGTCTGTGTACTCCATGGACGGTGATATCGCTCCAA
TTGCAGATATGCTTCGCGTTTTGAAGTCCCTACAGCTAGAAGTTTCGCGA
GAATTCTATCTTATTGTAGATGAGGCGCATTCCGGTGGTCTTTACGGACC
CAACGGAGAAGGTTTATGCGTTCATCTTAACTTAGAACGACATCCCAATC
TTTTTGCGAGAGTCATAACGTACGGGAAAGCGTTCGCTGGGCACGGTGCT
GTTATCTTGGGATCTTCTACCCTGAAGACATATTTGATAAACTACGCCCG
TCCCCTCATTTATTCCACGGCTCTATCCCCGCACAGCGTCGTTGCTCTAC
AGGCCCTTTACGAATTTATGAAATCAGCTGAAGCTCAGAAAGCTAGAACT
CGTCTTTGGAACTTGGTTGACCATTTCTATCGATGCATGCGTGAATTCCT
TCCTTCCAACCCCGTTCCTCACCATGAGCTCAGAACTCCAATTGGGGGAA
TTATGATTGCCGGCAATATCAAATGCGTTCGAATCGCTGAGAAATTGGTC
GACAGAGGATTCGACGTGTACCCTATCCGATCTCCAACAGTTCCACGCGG
TTTGGAACGGATAAGAATAATCATTCACGCACACAATGACTATGAAGAAA
TCAAAAGGCTTGTAAGGGCGATCGCTCAAGCTTTAGAAGACGATCAGGCC
CGCCCTAAGCTCTAA
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protein sequence of Ggra8166.t1

>Ggra8166.t1 ID=Ggra8166.t1|Name=Ggra8166.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=455bp
MSRKQIGLSLPSISEMCEDSKASVDSDDCWSTNNRGLLCHFSVPFVLTMK
GLHERIQDVLQVRKRNGALRQLRVPLSTASDFSSNDYLGFSRNDTCQSFV
KQFISNHPRCVPTGSTGSRLLSGHSRDLEVFENTAALFHHSEDALLFNSG
YNANISLFATVPSAEDAIVYDQFIHASVHDGMRMSRARQNLFSFRHNSVE
AMEAEIRMAASIVTGSVVVCVESVYSMDGDIAPIADMLRVLKSLQLEVSR
EFYLIVDEAHSGGLYGPNGEGLCVHLNLERHPNLFARVITYGKAFAGHGA
VILGSSTLKTYLINYARPLIYSTALSPHSVVALQALYEFMKSAEAQKART
RLWNLVDHFYRCMREFLPSNPVPHHELRTPIGGIMIAGNIKCVRIAEKLV
DRGFDVYPIRSPTVPRGLERIRIIIHAHNDYEEIKRLVRAIAQALEDDQA
RPKL*
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mRNA from alignment at tig00000872_pilon:21615..23510-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8166.t1 ID=Ggra8166.t1|Name=Ggra8166.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1896bp|location=Sequence derived from alignment at tig00000872_pilon:21615..23510- (Gracilaria gracilis GNS1m male)
ATGTCGCGGAAACAGATTGGGTTGAGCCTTCCCAGCATTTCTGAGATGTG
CGAGGACAGCAAAGCCAGTGTTGACTCTGATGACTGCTGGTCAACAAACA
GTAAGTTTGTATTACAAACTTTGTAACTAGTGTCTCCTAGCTGAGGTTGG
GTCTCTCTCAACTAACTTTTTGTCCTTCGGCAGATAGAGGACTTCTCTGT
GTAGGACAAATGTTGATACAACGGCATACATCATGACTTGAGATACAGTA
CAGTATCTAGCATTATTCATGCTTTCCTGTCAACTCTTATGACTTGAAGA
AAGTATACCATTTGGTGACGCGATGTTTTTAAACAAATATTTGGAGCGCC
TGTGTAAAAATGTTATAAAGGGAACGCCATCTACTGTAGATAAGGGTTTC
TTACCCAAACTACTCCGGGCTACATCGCACGTCTGAACTTCACTCTCAAG
ACTGAAGACCTCAAGACTGAAGACTGGAGGCAACACATCGACAGGTACAG
TAGTATATCTGGTTGTACGTTCTGGAAAACTCGACTGAGCAGTTGAGCCA
CCCCGTTTTGCCGCACGATGCTCTTTTTGCGGCGGTGGCAAGTTGTAGAT
CGGCCACAATGAACGCAGTACTACGTAATTCTTAATCCCCGTCTTTAGCA
CTTTTCTGTTCCCTTTGTGCTCACCATGAAAGGGTTGCATGAACGAATTC
AGGACGTGCTTCAAGTCAGAAAAAGAAATGGTGCTCTTCGTCAACTTCGT
GTTCCTCTTTCCACTGCTAGCGACTTTTCATCAAACGATTACTTGGGCTT
CTCACGAAACGATACTTGCCAAAGCTTTGTCAAGCAGTTCATTTCTAATC
ATCCCCGCTGTGTCCCTACGGGTTCAACAGGATCACGCTTGTTATCTGGC
CATTCAAGAGATTTAGAGGTGTTTGAAAACACTGCTGCTCTATTTCACCA
TTCCGAAGATGCGCTTCTCTTTAACTCCGGATACAATGCGAACATATCTC
TTTTTGCAACTGTTCCTTCTGCGGAAGACGCCATCGTTTACGATCAGTTT
ATTCATGCTTCGGTGCATGACGGTATGCGCATGAGTAGAGCGCGACAGAA
CTTGTTCTCATTTCGACACAATAGTGTGGAAGCCATGGAGGCTGAGATTC
GAATGGCTGCTTCTATAGTTACAGGCAGCGTGGTTGTCTGTGTAGAGTCT
GTGTACTCCATGGACGGTGATATCGCTCCAATTGCAGATATGCTTCGCGT
TTTGAAGTCCCTACAGCTAGAAGTTTCGCGAGAATTCTATCTTATTGTAG
ATGAGGCGCATTCCGGTGGTCTTTACGGACCCAACGGAGAAGGTTTATGC
GTTCATCTTAACTTAGAACGACATCCCAATCTTTTTGCGAGAGTCATAAC
GTACGGGAAAGCGTTCGCTGGGCACGGTGCTGTTATCTTGGGATCTTCTA
CCCTGAAGACATATTTGATAAACTACGCCCGTCCCCTCATTTATTCCACG
GCTCTATCCCCGCACAGCGTCGTTGCTCTACAGGCCCTTTACGAATTTAT
GAAATCAGCTGAAGCTCAGAAAGCTAGAACTCGTCTTTGGAACTTGGTTG
ACCATTTCTATCGATGCATGCGTGAATTCCTTCCTTCCAACCCCGTTCCT
CACCATGAGCTCAGAACTCCAATTGGGGGAATTATGATTGCCGGCAATAT
CAAATGCGTTCGAATCGCTGAGAAATTGGTCGACAGAGGATTCGACGTGT
ACCCTATCCGATCTCCAACAGTTCCACGCGGTTTGGAACGGATAAGAATA
ATCATTCACGCACACAATGACTATGAAGAAATCAAAAGGCTTGTAAGGGC
GATCGCTCAAGCTTTAGAAGACGATCAGGCCCGCCCTAAGCTCTAA
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Coding sequence (CDS) from alignment at tig00000872_pilon:21615..23510-

>Ggra8166.t1 ID=Ggra8166.t1|Name=Ggra8166.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1365bp|location=Sequence derived from alignment at tig00000872_pilon:21615..23510- (Gracilaria gracilis GNS1m male)
ATGTCGCGGAAACAGATTGGGTTGAGCCTTCCCAGCATTTCTGAGATGTG
CGAGGACAGCAAAGCCAGTGTTGACTCTGATGACTGCTGGTCAACAAACA
ATAGAGGACTTCTCTGTCACTTTTCTGTTCCCTTTGTGCTCACCATGAAA
GGGTTGCATGAACGAATTCAGGACGTGCTTCAAGTCAGAAAAAGAAATGG
TGCTCTTCGTCAACTTCGTGTTCCTCTTTCCACTGCTAGCGACTTTTCAT
CAAACGATTACTTGGGCTTCTCACGAAACGATACTTGCCAAAGCTTTGTC
AAGCAGTTCATTTCTAATCATCCCCGCTGTGTCCCTACGGGTTCAACAGG
ATCACGCTTGTTATCTGGCCATTCAAGAGATTTAGAGGTGTTTGAAAACA
CTGCTGCTCTATTTCACCATTCCGAAGATGCGCTTCTCTTTAACTCCGGA
TACAATGCGAACATATCTCTTTTTGCAACTGTTCCTTCTGCGGAAGACGC
CATCGTTTACGATCAGTTTATTCATGCTTCGGTGCATGACGGTATGCGCA
TGAGTAGAGCGCGACAGAACTTGTTCTCATTTCGACACAATAGTGTGGAA
GCCATGGAGGCTGAGATTCGAATGGCTGCTTCTATAGTTACAGGCAGCGT
GGTTGTCTGTGTAGAGTCTGTGTACTCCATGGACGGTGATATCGCTCCAA
TTGCAGATATGCTTCGCGTTTTGAAGTCCCTACAGCTAGAAGTTTCGCGA
GAATTCTATCTTATTGTAGATGAGGCGCATTCCGGTGGTCTTTACGGACC
CAACGGAGAAGGTTTATGCGTTCATCTTAACTTAGAACGACATCCCAATC
TTTTTGCGAGAGTCATAACGTACGGGAAAGCGTTCGCTGGGCACGGTGCT
GTTATCTTGGGATCTTCTACCCTGAAGACATATTTGATAAACTACGCCCG
TCCCCTCATTTATTCCACGGCTCTATCCCCGCACAGCGTCGTTGCTCTAC
AGGCCCTTTACGAATTTATGAAATCAGCTGAAGCTCAGAAAGCTAGAACT
CGTCTTTGGAACTTGGTTGACCATTTCTATCGATGCATGCGTGAATTCCT
TCCTTCCAACCCCGTTCCTCACCATGAGCTCAGAACTCCAATTGGGGGAA
TTATGATTGCCGGCAATATCAAATGCGTTCGAATCGCTGAGAAATTGGTC
GACAGAGGATTCGACGTGTACCCTATCCGATCTCCAACAGTTCCACGCGG
TTTGGAACGGATAAGAATAATCATTCACGCACACAATGACTATGAAGAAA
TCAAAAGGCTTGTAAGGGCGATCGCTCAAGCTTTAGAAGACGATCAGGCC
CGCCCTAAGCTCTAA
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