Ggra8135.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8135.t1
Unique Name	Ggra8135.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	572

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000118_pilon	contig	tig00000118_pilon:305664..307379 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	870187.Thini_1498
PFAMs	ASH,An_peroxidase,HCBP_related,HemolysinCabind
Max annot lvl	1236\|Gammaproteobacteria
Evalue	9.53e-89
EggNOG OGs	COG2931@1\|root,COG2931@2\|Bacteria,1MU7T@1224\|Proteobacteria,1RZD3@1236\|Gammaproteobacteria
Description	Animal haem peroxidase
COG category	Q

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8135	Ggra8135	Gracilaria gracilis GNS1m male	gene	tig00000118_pilon 305664..307379 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8135.t1.stop1	Ggra8135.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000118_pilon 305664..305666 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8135.t1.CDS1	Ggra8135.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000118_pilon 305664..307379 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8135.t1.exon1	Ggra8135.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000118_pilon 305664..307379 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8135.t1.start1	Ggra8135.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000118_pilon 307377..307379 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8135.t1	Ggra8135.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000118_pilon 305664..307379 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000118_pilon:305664..307379-
coding sequence from alignment at tig00000118_pilon:305664..307379-

mRNA sequence

>Ggra8135.t1 ID=Ggra8135.t1|Name=Ggra8135.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=572bp
MKSFTLALLLLALFSIAAAQAPTSKGRDSHAFSPLPRRDNRSPRRAAFSL
SSGPGAAAPVDEVCSAITVRTLNGSCTSLVDSSLGEARRAQFSYLGVDSR
TFNDDGLLSPREISNIVASQTATTQNSRGLSELFVFFGQFIDHDFALATE
SDTEVDIEVPEDDPTLRVNSLHFSRSDRAIVNTASTTERAVTILSSALDL
STVYGVNQNRNTFLRVPNSCRLKTSEGNNLPFNTDDLVNTPSTTASFYIA
GDTRVNEHPMLTTIHTIFLREHNNICDLLEDALPDMDAESMFQAARAVNI
AQYQKIIYEEWIPAIMGRRMPPYTGYKPNVDPTISIEFTTAGFRLGHTMV
GNGVSRIDENGNILPLITMAEMFFRDSNLATGDIENFLRGAAQTRAQEVD
LLVVDALRNFLFTNVDNVEGFDLIALNLQRSRDHNVPRFNELRRFFLGSP
ANSFAQISSDPAVRQKLRQAYGTVDNVEAWVGLMAENKRGDVGLGRTNEQ
LWMTEFTRLRDGDRFFYLDNDRHNQIPQQVLEALPQINQDVFVRRAIFRR
ILRRTTNIRGADVPSGNVFRT*

spliced messenger RNA

>Ggra8135.t1 ID=Ggra8135.t1|Name=Ggra8135.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1716bp|location=Sequence derived from alignment at tig00000118_pilon:305664..307379- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTCCTTCACCCTCGCCCTTCTCCTTCTCGCGCTCTTCTCCATCGC
CGCTGCCCAGGCGCCCACCTCAAAGGGCCGCGACTCACACGCCTTCAGTC
CATTGCCGCGTAGAGATAACCGCTCTCCCCGCCGGGCTGCATTCTCCTTG
TCTTCCGGCCCGGGCGCCGCAGCCCCCGTCGATGAAGTTTGCTCCGCCAT
CACCGTACGCACCCTCAACGGCAGTTGCACTTCATTGGTGGACTCTAGCT
TGGGTGAAGCTCGTCGCGCACAGTTCAGCTATCTCGGTGTCGACTCCAGA
ACCTTCAACGACGACGGACTCTTGAGTCCTCGTGAGATTTCCAACATCGT
CGCAAGTCAGACCGCCACCACCCAAAACTCGCGTGGTCTGAGCGAGTTGT
TTGTGTTCTTCGGTCAGTTCATCGATCACGACTTCGCGTTGGCGACGGAA
TCTGACACGGAGGTCGACATCGAGGTGCCAGAAGACGATCCAACTCTCCG
AGTGAATTCGCTGCACTTCAGTCGATCCGACCGAGCTATCGTCAACACTG
CTTCCACGACAGAGCGTGCCGTCACAATTCTCTCTTCTGCGCTTGACCTT
TCTACCGTGTACGGCGTCAACCAGAATCGCAACACCTTCCTCAGGGTGCC
CAACTCCTGTCGCCTCAAGACCTCCGAGGGAAACAACCTACCGTTCAACA
CCGATGACCTCGTCAACACCCCGAGTACGACCGCTTCGTTCTATATCGCC
GGCGACACGCGAGTGAACGAACACCCCATGCTCACAACTATTCATACAAT
CTTCCTTCGTGAGCATAACAACATCTGCGACTTGCTGGAGGACGCGCTGC
CCGACATGGATGCCGAGAGTATGTTCCAAGCCGCTCGCGCAGTCAACATC
GCCCAGTACCAGAAGATTATCTACGAGGAATGGATACCGGCCATTATGGG
CCGCCGCATGCCGCCTTACACGGGCTACAAACCGAATGTGGACCCGACCA
TCAGTATTGAGTTCACCACTGCTGGCTTCCGTCTGGGCCACACTATGGTT
GGTAACGGCGTGAGCCGTATCGACGAAAACGGGAACATACTTCCGCTGAT
CACCATGGCGGAGATGTTCTTCCGCGACAGCAACCTGGCCACGGGCGACA
TTGAAAACTTCTTGCGGGGTGCAGCTCAAACTCGCGCACAGGAGGTGGAC
TTGCTTGTGGTAGACGCGTTGCGCAACTTCCTGTTCACCAATGTGGACAA
CGTGGAAGGCTTCGATCTTATCGCGCTCAACCTGCAGAGGAGTCGCGACC
ACAACGTGCCGAGATTCAACGAGCTTCGCCGCTTCTTCCTTGGCTCTCCG
GCCAACTCTTTTGCACAAATCTCATCTGATCCTGCCGTCCGCCAGAAGCT
GAGACAAGCTTACGGCACCGTCGACAACGTAGAGGCCTGGGTGGGACTGA
TGGCGGAAAACAAGCGCGGCGATGTTGGTCTGGGTCGCACGAACGAGCAG
CTGTGGATGACAGAATTCACTCGTCTTCGGGATGGTGATAGGTTCTTCTA
CCTCGACAACGACCGTCATAACCAGATTCCTCAGCAGGTGCTGGAGGCAC
TTCCACAGATCAATCAGGACGTCTTCGTGCGTCGAGCCATCTTCCGTCGC
ATATTGCGCCGCACGACAAACATCAGAGGTGCTGACGTACCCTCCGGCAA
TGTCTTCCGTACTTAG

protein sequence of Ggra8135.t1

>Ggra8135.t1 ID=Ggra8135.t1|Name=Ggra8135.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=572bp
MKSFTLALLLLALFSIAAAQAPTSKGRDSHAFSPLPRRDNRSPRRAAFSL
SSGPGAAAPVDEVCSAITVRTLNGSCTSLVDSSLGEARRAQFSYLGVDSR
TFNDDGLLSPREISNIVASQTATTQNSRGLSELFVFFGQFIDHDFALATE
SDTEVDIEVPEDDPTLRVNSLHFSRSDRAIVNTASTTERAVTILSSALDL
STVYGVNQNRNTFLRVPNSCRLKTSEGNNLPFNTDDLVNTPSTTASFYIA
GDTRVNEHPMLTTIHTIFLREHNNICDLLEDALPDMDAESMFQAARAVNI
AQYQKIIYEEWIPAIMGRRMPPYTGYKPNVDPTISIEFTTAGFRLGHTMV
GNGVSRIDENGNILPLITMAEMFFRDSNLATGDIENFLRGAAQTRAQEVD
LLVVDALRNFLFTNVDNVEGFDLIALNLQRSRDHNVPRFNELRRFFLGSP
ANSFAQISSDPAVRQKLRQAYGTVDNVEAWVGLMAENKRGDVGLGRTNEQ
LWMTEFTRLRDGDRFFYLDNDRHNQIPQQVLEALPQINQDVFVRRAIFRR
ILRRTTNIRGADVPSGNVFRT*

mRNA from alignment at tig00000118_pilon:305664..307379-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8135.t1 ID=Ggra8135.t1|Name=Ggra8135.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1716bp|location=Sequence derived from alignment at tig00000118_pilon:305664..307379- (Gracilaria gracilis GNS1m male)
ATGAAGTCCTTCACCCTCGCCCTTCTCCTTCTCGCGCTCTTCTCCATCGC
CGCTGCCCAGGCGCCCACCTCAAAGGGCCGCGACTCACACGCCTTCAGTC
CATTGCCGCGTAGAGATAACCGCTCTCCCCGCCGGGCTGCATTCTCCTTG
TCTTCCGGCCCGGGCGCCGCAGCCCCCGTCGATGAAGTTTGCTCCGCCAT
CACCGTACGCACCCTCAACGGCAGTTGCACTTCATTGGTGGACTCTAGCT
TGGGTGAAGCTCGTCGCGCACAGTTCAGCTATCTCGGTGTCGACTCCAGA
ACCTTCAACGACGACGGACTCTTGAGTCCTCGTGAGATTTCCAACATCGT
CGCAAGTCAGACCGCCACCACCCAAAACTCGCGTGGTCTGAGCGAGTTGT
TTGTGTTCTTCGGTCAGTTCATCGATCACGACTTCGCGTTGGCGACGGAA
TCTGACACGGAGGTCGACATCGAGGTGCCAGAAGACGATCCAACTCTCCG
AGTGAATTCGCTGCACTTCAGTCGATCCGACCGAGCTATCGTCAACACTG
CTTCCACGACAGAGCGTGCCGTCACAATTCTCTCTTCTGCGCTTGACCTT
TCTACCGTGTACGGCGTCAACCAGAATCGCAACACCTTCCTCAGGGTGCC
CAACTCCTGTCGCCTCAAGACCTCCGAGGGAAACAACCTACCGTTCAACA
CCGATGACCTCGTCAACACCCCGAGTACGACCGCTTCGTTCTATATCGCC
GGCGACACGCGAGTGAACGAACACCCCATGCTCACAACTATTCATACAAT
CTTCCTTCGTGAGCATAACAACATCTGCGACTTGCTGGAGGACGCGCTGC
CCGACATGGATGCCGAGAGTATGTTCCAAGCCGCTCGCGCAGTCAACATC
GCCCAGTACCAGAAGATTATCTACGAGGAATGGATACCGGCCATTATGGG
CCGCCGCATGCCGCCTTACACGGGCTACAAACCGAATGTGGACCCGACCA
TCAGTATTGAGTTCACCACTGCTGGCTTCCGTCTGGGCCACACTATGGTT
GGTAACGGCGTGAGCCGTATCGACGAAAACGGGAACATACTTCCGCTGAT
CACCATGGCGGAGATGTTCTTCCGCGACAGCAACCTGGCCACGGGCGACA
TTGAAAACTTCTTGCGGGGTGCAGCTCAAACTCGCGCACAGGAGGTGGAC
TTGCTTGTGGTAGACGCGTTGCGCAACTTCCTGTTCACCAATGTGGACAA
CGTGGAAGGCTTCGATCTTATCGCGCTCAACCTGCAGAGGAGTCGCGACC
ACAACGTGCCGAGATTCAACGAGCTTCGCCGCTTCTTCCTTGGCTCTCCG
GCCAACTCTTTTGCACAAATCTCATCTGATCCTGCCGTCCGCCAGAAGCT
GAGACAAGCTTACGGCACCGTCGACAACGTAGAGGCCTGGGTGGGACTGA
TGGCGGAAAACAAGCGCGGCGATGTTGGTCTGGGTCGCACGAACGAGCAG
CTGTGGATGACAGAATTCACTCGTCTTCGGGATGGTGATAGGTTCTTCTA
CCTCGACAACGACCGTCATAACCAGATTCCTCAGCAGGTGCTGGAGGCAC
TTCCACAGATCAATCAGGACGTCTTCGTGCGTCGAGCCATCTTCCGTCGC
ATATTGCGCCGCACGACAAACATCAGAGGTGCTGACGTACCCTCCGGCAA
TGTCTTCCGTACTTAG

Coding sequence (CDS) from alignment at tig00000118_pilon:305664..307379-

>Ggra8135.t1 ID=Ggra8135.t1|Name=Ggra8135.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1716bp|location=Sequence derived from alignment at tig00000118_pilon:305664..307379- (Gracilaria gracilis GNS1m male)
ATGAAGTCCTTCACCCTCGCCCTTCTCCTTCTCGCGCTCTTCTCCATCGC
CGCTGCCCAGGCGCCCACCTCAAAGGGCCGCGACTCACACGCCTTCAGTC
CATTGCCGCGTAGAGATAACCGCTCTCCCCGCCGGGCTGCATTCTCCTTG
TCTTCCGGCCCGGGCGCCGCAGCCCCCGTCGATGAAGTTTGCTCCGCCAT
CACCGTACGCACCCTCAACGGCAGTTGCACTTCATTGGTGGACTCTAGCT
TGGGTGAAGCTCGTCGCGCACAGTTCAGCTATCTCGGTGTCGACTCCAGA
ACCTTCAACGACGACGGACTCTTGAGTCCTCGTGAGATTTCCAACATCGT
CGCAAGTCAGACCGCCACCACCCAAAACTCGCGTGGTCTGAGCGAGTTGT
TTGTGTTCTTCGGTCAGTTCATCGATCACGACTTCGCGTTGGCGACGGAA
TCTGACACGGAGGTCGACATCGAGGTGCCAGAAGACGATCCAACTCTCCG
AGTGAATTCGCTGCACTTCAGTCGATCCGACCGAGCTATCGTCAACACTG
CTTCCACGACAGAGCGTGCCGTCACAATTCTCTCTTCTGCGCTTGACCTT
TCTACCGTGTACGGCGTCAACCAGAATCGCAACACCTTCCTCAGGGTGCC
CAACTCCTGTCGCCTCAAGACCTCCGAGGGAAACAACCTACCGTTCAACA
CCGATGACCTCGTCAACACCCCGAGTACGACCGCTTCGTTCTATATCGCC
GGCGACACGCGAGTGAACGAACACCCCATGCTCACAACTATTCATACAAT
CTTCCTTCGTGAGCATAACAACATCTGCGACTTGCTGGAGGACGCGCTGC
CCGACATGGATGCCGAGAGTATGTTCCAAGCCGCTCGCGCAGTCAACATC
GCCCAGTACCAGAAGATTATCTACGAGGAATGGATACCGGCCATTATGGG
CCGCCGCATGCCGCCTTACACGGGCTACAAACCGAATGTGGACCCGACCA
TCAGTATTGAGTTCACCACTGCTGGCTTCCGTCTGGGCCACACTATGGTT
GGTAACGGCGTGAGCCGTATCGACGAAAACGGGAACATACTTCCGCTGAT
CACCATGGCGGAGATGTTCTTCCGCGACAGCAACCTGGCCACGGGCGACA
TTGAAAACTTCTTGCGGGGTGCAGCTCAAACTCGCGCACAGGAGGTGGAC
TTGCTTGTGGTAGACGCGTTGCGCAACTTCCTGTTCACCAATGTGGACAA
CGTGGAAGGCTTCGATCTTATCGCGCTCAACCTGCAGAGGAGTCGCGACC
ACAACGTGCCGAGATTCAACGAGCTTCGCCGCTTCTTCCTTGGCTCTCCG
GCCAACTCTTTTGCACAAATCTCATCTGATCCTGCCGTCCGCCAGAAGCT
GAGACAAGCTTACGGCACCGTCGACAACGTAGAGGCCTGGGTGGGACTGA
TGGCGGAAAACAAGCGCGGCGATGTTGGTCTGGGTCGCACGAACGAGCAG
CTGTGGATGACAGAATTCACTCGTCTTCGGGATGGTGATAGGTTCTTCTA
CCTCGACAACGACCGTCATAACCAGATTCCTCAGCAGGTGCTGGAGGCAC
TTCCACAGATCAATCAGGACGTCTTCGTGCGTCGAGCCATCTTCCGTCGC
ATATTGCGCCGCACGACAAACATCAGAGGTGCTGACGTACCCTCCGGCAA
TGTCTTCCGTACTTAG