Ggra8122.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8122.t1
Unique Name	Ggra8122.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	433

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000118_pilon	contig	tig00000118_pilon:92291..93589 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8122	Ggra8122	Gracilaria gracilis GNS1m male	gene	tig00000118_pilon 92291..93589 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8122.t1.start1	Ggra8122.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000118_pilon 92291..92293 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8122.t1.CDS1	Ggra8122.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000118_pilon 92291..93589 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8122.t1.exon1	Ggra8122.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000118_pilon 92291..93589 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8122.t1.stop1	Ggra8122.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000118_pilon 93587..93589 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8122.t1	Ggra8122.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000118_pilon 92291..93589 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000118_pilon:92291..93589+
coding sequence from alignment at tig00000118_pilon:92291..93589+

mRNA sequence

>Ggra8122.t1 ID=Ggra8122.t1|Name=Ggra8122.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=433bp
MSNHVSIEECNYSALNESLQTRPVPGEQMRNHPREEKETICPNAPSLNMT
GAPKVAPGRERKHSTKCQHKRRPLRQATAQEDDTRSKSRGRKKRRPKRNV
SALAESRNDRGKQNISSQNEGNPEPKKRRRETETDYESRNLDKDFGRTKK
LGVAKRQPNRKIPRSTKKEGLGSVTKKRLRDASAQNNTNTASSRKERRNA
GRMKELASAKRQPSRSATRKPQEETRRYVKRKQGQESGARGSSNTLRSVR
RTKMVGAPQEVVPKIDKLPISTVGFSAKDRPKSRPRKLRENPVQQDAKPV
QSRKRRRRKESQRLSSPPMLGSDSFTSMKNPDAVEGGLVEQSPATCGKQS
WMKESICSSADHAGSFHAGSRTWFSGLQVKQRLYENQESFTGMEDDSDSH
SLQGQLEQYMREEDGDYIMKIDDDLVMFPVDQ*

spliced messenger RNA

>Ggra8122.t1 ID=Ggra8122.t1|Name=Ggra8122.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1299bp|location=Sequence derived from alignment at tig00000118_pilon:92291..93589+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAATCATGTATCCATTGAAGAATGCAATTATTCTGCGTTAAATGA
ATCACTGCAGACTAGGCCTGTACCCGGAGAACAAATGAGGAACCATCCAA
GAGAAGAAAAGGAGACAATCTGTCCCAATGCTCCTTCTCTTAACATGACA
GGAGCACCTAAGGTCGCCCCCGGCCGAGAACGAAAACATAGCACCAAATG
TCAGCACAAGCGTCGTCCACTTCGACAAGCCACTGCTCAAGAAGATGACA
CCCGCTCCAAATCTCGAGGAAGAAAGAAAAGGAGGCCAAAAAGAAATGTA
TCTGCTCTTGCTGAGAGCCGAAACGATCGAGGCAAGCAGAACATATCGTC
ACAGAATGAGGGAAATCCGGAGCCGAAGAAGCGACGTCGTGAAACTGAGA
CCGATTATGAGTCTCGAAACCTGGACAAGGACTTCGGAAGGACGAAGAAG
TTGGGCGTGGCAAAGCGCCAACCAAACAGAAAAATTCCGAGATCCACAAA
AAAGGAAGGGCTTGGATCCGTGACGAAGAAGCGACTTCGGGATGCCTCCG
CCCAGAATAACACCAATACTGCTTCGTCTCGGAAGGAAAGAAGAAACGCT
GGCAGAATGAAAGAGCTGGCTTCTGCAAAACGCCAACCGAGCCGGAGTGC
TACGAGGAAACCGCAGGAGGAAACGCGCAGGTATGTGAAACGAAAGCAAG
GCCAAGAATCTGGTGCACGGGGGAGCTCCAACACATTGCGTTCTGTACGT
AGAACAAAAATGGTAGGGGCACCCCAAGAAGTAGTCCCGAAGATCGACAA
GTTGCCGATTTCTACTGTGGGTTTCTCGGCGAAGGATAGACCCAAATCGC
GACCACGGAAGCTTCGTGAGAACCCTGTCCAGCAGGACGCCAAACCTGTT
CAGTCTCGAAAACGACGACGAAGGAAGGAAAGCCAGCGACTGAGCTCGCC
GCCTATGCTGGGCTCTGACTCATTTACATCGATGAAAAATCCAGATGCCG
TCGAAGGTGGGTTGGTGGAGCAATCACCTGCAACTTGTGGTAAACAGTCA
TGGATGAAAGAAAGCATTTGTTCTTCAGCAGACCACGCGGGGTCGTTTCA
TGCTGGGTCGAGAACTTGGTTTTCTGGACTCCAAGTCAAACAGCGACTGT
ATGAAAACCAGGAGAGTTTCACTGGAATGGAGGATGATAGTGACTCCCAT
TCTCTTCAAGGACAGCTTGAGCAGTACATGAGAGAGGAAGATGGCGACTA
CATCATGAAAATTGACGATGATTTGGTTATGTTTCCAGTCGATCAATAG

protein sequence of Ggra8122.t1

>Ggra8122.t1 ID=Ggra8122.t1|Name=Ggra8122.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=433bp
MSNHVSIEECNYSALNESLQTRPVPGEQMRNHPREEKETICPNAPSLNMT
GAPKVAPGRERKHSTKCQHKRRPLRQATAQEDDTRSKSRGRKKRRPKRNV
SALAESRNDRGKQNISSQNEGNPEPKKRRRETETDYESRNLDKDFGRTKK
LGVAKRQPNRKIPRSTKKEGLGSVTKKRLRDASAQNNTNTASSRKERRNA
GRMKELASAKRQPSRSATRKPQEETRRYVKRKQGQESGARGSSNTLRSVR
RTKMVGAPQEVVPKIDKLPISTVGFSAKDRPKSRPRKLRENPVQQDAKPV
QSRKRRRRKESQRLSSPPMLGSDSFTSMKNPDAVEGGLVEQSPATCGKQS
WMKESICSSADHAGSFHAGSRTWFSGLQVKQRLYENQESFTGMEDDSDSH
SLQGQLEQYMREEDGDYIMKIDDDLVMFPVDQ*

mRNA from alignment at tig00000118_pilon:92291..93589+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8122.t1 ID=Ggra8122.t1|Name=Ggra8122.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1299bp|location=Sequence derived from alignment at tig00000118_pilon:92291..93589+ (Gracilaria gracilis GNS1m male)
ATGAGCAATCATGTATCCATTGAAGAATGCAATTATTCTGCGTTAAATGA
ATCACTGCAGACTAGGCCTGTACCCGGAGAACAAATGAGGAACCATCCAA
GAGAAGAAAAGGAGACAATCTGTCCCAATGCTCCTTCTCTTAACATGACA
GGAGCACCTAAGGTCGCCCCCGGCCGAGAACGAAAACATAGCACCAAATG
TCAGCACAAGCGTCGTCCACTTCGACAAGCCACTGCTCAAGAAGATGACA
CCCGCTCCAAATCTCGAGGAAGAAAGAAAAGGAGGCCAAAAAGAAATGTA
TCTGCTCTTGCTGAGAGCCGAAACGATCGAGGCAAGCAGAACATATCGTC
ACAGAATGAGGGAAATCCGGAGCCGAAGAAGCGACGTCGTGAAACTGAGA
CCGATTATGAGTCTCGAAACCTGGACAAGGACTTCGGAAGGACGAAGAAG
TTGGGCGTGGCAAAGCGCCAACCAAACAGAAAAATTCCGAGATCCACAAA
AAAGGAAGGGCTTGGATCCGTGACGAAGAAGCGACTTCGGGATGCCTCCG
CCCAGAATAACACCAATACTGCTTCGTCTCGGAAGGAAAGAAGAAACGCT
GGCAGAATGAAAGAGCTGGCTTCTGCAAAACGCCAACCGAGCCGGAGTGC
TACGAGGAAACCGCAGGAGGAAACGCGCAGGTATGTGAAACGAAAGCAAG
GCCAAGAATCTGGTGCACGGGGGAGCTCCAACACATTGCGTTCTGTACGT
AGAACAAAAATGGTAGGGGCACCCCAAGAAGTAGTCCCGAAGATCGACAA
GTTGCCGATTTCTACTGTGGGTTTCTCGGCGAAGGATAGACCCAAATCGC
GACCACGGAAGCTTCGTGAGAACCCTGTCCAGCAGGACGCCAAACCTGTT
CAGTCTCGAAAACGACGACGAAGGAAGGAAAGCCAGCGACTGAGCTCGCC
GCCTATGCTGGGCTCTGACTCATTTACATCGATGAAAAATCCAGATGCCG
TCGAAGGTGGGTTGGTGGAGCAATCACCTGCAACTTGTGGTAAACAGTCA
TGGATGAAAGAAAGCATTTGTTCTTCAGCAGACCACGCGGGGTCGTTTCA
TGCTGGGTCGAGAACTTGGTTTTCTGGACTCCAAGTCAAACAGCGACTGT
ATGAAAACCAGGAGAGTTTCACTGGAATGGAGGATGATAGTGACTCCCAT
TCTCTTCAAGGACAGCTTGAGCAGTACATGAGAGAGGAAGATGGCGACTA
CATCATGAAAATTGACGATGATTTGGTTATGTTTCCAGTCGATCAATAG

Coding sequence (CDS) from alignment at tig00000118_pilon:92291..93589+

>Ggra8122.t1 ID=Ggra8122.t1|Name=Ggra8122.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1299bp|location=Sequence derived from alignment at tig00000118_pilon:92291..93589+ (Gracilaria gracilis GNS1m male)
ATGAGCAATCATGTATCCATTGAAGAATGCAATTATTCTGCGTTAAATGA
ATCACTGCAGACTAGGCCTGTACCCGGAGAACAAATGAGGAACCATCCAA
GAGAAGAAAAGGAGACAATCTGTCCCAATGCTCCTTCTCTTAACATGACA
GGAGCACCTAAGGTCGCCCCCGGCCGAGAACGAAAACATAGCACCAAATG
TCAGCACAAGCGTCGTCCACTTCGACAAGCCACTGCTCAAGAAGATGACA
CCCGCTCCAAATCTCGAGGAAGAAAGAAAAGGAGGCCAAAAAGAAATGTA
TCTGCTCTTGCTGAGAGCCGAAACGATCGAGGCAAGCAGAACATATCGTC
ACAGAATGAGGGAAATCCGGAGCCGAAGAAGCGACGTCGTGAAACTGAGA
CCGATTATGAGTCTCGAAACCTGGACAAGGACTTCGGAAGGACGAAGAAG
TTGGGCGTGGCAAAGCGCCAACCAAACAGAAAAATTCCGAGATCCACAAA
AAAGGAAGGGCTTGGATCCGTGACGAAGAAGCGACTTCGGGATGCCTCCG
CCCAGAATAACACCAATACTGCTTCGTCTCGGAAGGAAAGAAGAAACGCT
GGCAGAATGAAAGAGCTGGCTTCTGCAAAACGCCAACCGAGCCGGAGTGC
TACGAGGAAACCGCAGGAGGAAACGCGCAGGTATGTGAAACGAAAGCAAG
GCCAAGAATCTGGTGCACGGGGGAGCTCCAACACATTGCGTTCTGTACGT
AGAACAAAAATGGTAGGGGCACCCCAAGAAGTAGTCCCGAAGATCGACAA
GTTGCCGATTTCTACTGTGGGTTTCTCGGCGAAGGATAGACCCAAATCGC
GACCACGGAAGCTTCGTGAGAACCCTGTCCAGCAGGACGCCAAACCTGTT
CAGTCTCGAAAACGACGACGAAGGAAGGAAAGCCAGCGACTGAGCTCGCC
GCCTATGCTGGGCTCTGACTCATTTACATCGATGAAAAATCCAGATGCCG
TCGAAGGTGGGTTGGTGGAGCAATCACCTGCAACTTGTGGTAAACAGTCA
TGGATGAAAGAAAGCATTTGTTCTTCAGCAGACCACGCGGGGTCGTTTCA
TGCTGGGTCGAGAACTTGGTTTTCTGGACTCCAAGTCAAACAGCGACTGT
ATGAAAACCAGGAGAGTTTCACTGGAATGGAGGATGATAGTGACTCCCAT
TCTCTTCAAGGACAGCTTGAGCAGTACATGAGAGAGGAAGATGGCGACTA
CATCATGAAAATTGACGATGATTTGGTTATGTTTCCAGTCGATCAATAG