Ggra8090.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8090.t1
Unique NameGgra8090.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length107
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000867_piloncontigtig00000867_pilon:748089..748409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8090Ggra8090Gracilaria gracilis GNS1m malegenetig00000867_pilon 748089..748409 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8090.t1.stop1Ggra8090.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000867_pilon 748089..748091 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8090.t1.CDS1Ggra8090.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000867_pilon 748089..748409 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8090.t1.exon1Ggra8090.t1.exon1Gracilaria gracilis GNS1m maleexontig00000867_pilon 748089..748409 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8090.t1.start1Ggra8090.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000867_pilon 748407..748409 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8090.t1Ggra8090.t1Gracilaria gracilis GNS1m malepolypeptidetig00000867_pilon 748089..748409 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8090.t1 ID=Ggra8090.t1|Name=Ggra8090.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=107bp
MFRNLISLHGAAAAVVNQTSQAAFDVFFTVFFTELNNLQTRLDEYLGQVD
DLLERLFNTVAYHLRNNVNFALERIEGGLMQRNNARTWRAVDVIQYFGWD
GSFPLS*
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spliced messenger RNA

>Ggra8090.t1 ID=Ggra8090.t1|Name=Ggra8090.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=321bp|location=Sequence derived from alignment at tig00000867_pilon:748089..748409- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCGAAACCTGATTTCGCTACACGGTGCGGCAGCAGCCGTGGTGAA
CCAAACCAGTCAGGCGGCGTTCGACGTGTTCTTCACCGTGTTCTTCACGG
AACTCAACAACTTGCAGACGAGACTGGACGAATACCTGGGGCAGGTGGAT
GACCTGCTCGAAAGACTGTTCAATACGGTGGCGTACCACCTTCGAAACAA
CGTGAATTTCGCGCTGGAAAGGATTGAGGGCGGGCTGATGCAGCGTAATA
ACGCGCGTACTTGGCGGGCTGTTGACGTGATCCAGTACTTTGGGTGGGAT
GGATCATTTCCCCTTTCTTGA
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protein sequence of Ggra8090.t1

>Ggra8090.t1 ID=Ggra8090.t1|Name=Ggra8090.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=107bp
MFRNLISLHGAAAAVVNQTSQAAFDVFFTVFFTELNNLQTRLDEYLGQVD
DLLERLFNTVAYHLRNNVNFALERIEGGLMQRNNARTWRAVDVIQYFGWD
GSFPLS*
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mRNA from alignment at tig00000867_pilon:748089..748409-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8090.t1 ID=Ggra8090.t1|Name=Ggra8090.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=321bp|location=Sequence derived from alignment at tig00000867_pilon:748089..748409- (Gracilaria gracilis GNS1m male)
ATGTTTCGAAACCTGATTTCGCTACACGGTGCGGCAGCAGCCGTGGTGAA
CCAAACCAGTCAGGCGGCGTTCGACGTGTTCTTCACCGTGTTCTTCACGG
AACTCAACAACTTGCAGACGAGACTGGACGAATACCTGGGGCAGGTGGAT
GACCTGCTCGAAAGACTGTTCAATACGGTGGCGTACCACCTTCGAAACAA
CGTGAATTTCGCGCTGGAAAGGATTGAGGGCGGGCTGATGCAGCGTAATA
ACGCGCGTACTTGGCGGGCTGTTGACGTGATCCAGTACTTTGGGTGGGAT
GGATCATTTCCCCTTTCTTGA
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Coding sequence (CDS) from alignment at tig00000867_pilon:748089..748409-

>Ggra8090.t1 ID=Ggra8090.t1|Name=Ggra8090.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=321bp|location=Sequence derived from alignment at tig00000867_pilon:748089..748409- (Gracilaria gracilis GNS1m male)
ATGTTTCGAAACCTGATTTCGCTACACGGTGCGGCAGCAGCCGTGGTGAA
CCAAACCAGTCAGGCGGCGTTCGACGTGTTCTTCACCGTGTTCTTCACGG
AACTCAACAACTTGCAGACGAGACTGGACGAATACCTGGGGCAGGTGGAT
GACCTGCTCGAAAGACTGTTCAATACGGTGGCGTACCACCTTCGAAACAA
CGTGAATTTCGCGCTGGAAAGGATTGAGGGCGGGCTGATGCAGCGTAATA
ACGCGCGTACTTGGCGGGCTGTTGACGTGATCCAGTACTTTGGGTGGGAT
GGATCATTTCCCCTTTCTTGA
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