Ggra809.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra809.t1
Unique NameGgra809.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length162
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000234_piloncontigtig00000234_pilon:63586..64189 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002503222.1
Preferred nameGWD2
PFAMsPPDK_N
Max annot lvl3041|Chlorophyta
KEGG koko:K08244
Evalue8.07e-09
EggNOG OGsCOG0574@1|root,2QQ6R@2759|Eukaryota,37KSG@33090|Viridiplantae,34JA2@3041|Chlorophyta
EC2.7.9.4
DescriptionPyruvate phosphate dikinase, PEP/pyruvate binding domain
COG categoryG
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra809Ggra809Gracilaria gracilis GNS1m malegenetig00000234_pilon 63586..64189 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra809.t1Ggra809.t1Gracilaria gracilis GNS1m malepolypeptidetig00000234_pilon 63586..64189 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra809.t1.stop1Ggra809.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000234_pilon 63586..63588 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra809.t1.CDS1Ggra809.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000234_pilon 63586..63932 -
Ggra809.t1.CDS2Ggra809.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000234_pilon 64051..64189 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra809.t1.exon1Ggra809.t1.exon1Gracilaria gracilis GNS1m maleexontig00000234_pilon 63586..63932 -
Ggra809.t1.exon2Ggra809.t1.exon2Gracilaria gracilis GNS1m maleexontig00000234_pilon 64051..64189 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra809.t1.intron1Ggra809.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000234_pilon 63933..64050 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra809.t1.start1Ggra809.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000234_pilon 64187..64189 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra809.t1 ID=Ggra809.t1|Name=Ggra809.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=162bp
MNDLGSVIDRLGHQGESHDVGLRAAADMNIVRNVITAIIDRYNQRLELVP
LFDVLQKIGPYAIIATMDKETKGPVVVFNTLRESEGATMKRETVIVANEY
DGGKDVPKNVSYVVIGSTVDVLSPVSVRARNERHGLIACLDETKLAKLRG
LHGGVTDTLLC*
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spliced messenger RNA

>Ggra809.t1 ID=Ggra809.t1|Name=Ggra809.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=486bp|location=Sequence derived from alignment at tig00000234_pilon:63586..64189- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGATTTGGGTTCAGTAATAGACAGGCTTGGTCACCAAGGCGAATC
TCATGATGTTGGACTCAGAGCTGCAGCTGATATGAACATTGTGAGAAACG
TTATCACTGCGATTATTGACAGATACAACCAACGTCTTGAGCTGGTCCCG
CTGTTCGACGTGTTGCAGAAAATCGGTCCCTATGCGATAATTGCTACGAT
GGATAAAGAGACTAAGGGCCCGGTCGTCGTGTTCAATACGCTTAGAGAAT
CTGAAGGTGCAACTATGAAACGCGAAACCGTGATAGTCGCCAATGAATAT
GACGGGGGCAAAGATGTCCCGAAGAACGTTAGCTATGTGGTAATCGGATC
TACTGTTGATGTCCTTTCGCCTGTTTCTGTTCGAGCTCGAAACGAACGCC
ATGGCCTCATTGCCTGCCTCGATGAAACTAAGCTTGCCAAACTTCGAGGA
CTTCACGGTGGGGTCACAGATACGCTTTTGTGTTAA
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protein sequence of Ggra809.t1

>Ggra809.t1 ID=Ggra809.t1|Name=Ggra809.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=162bp
MNDLGSVIDRLGHQGESHDVGLRAAADMNIVRNVITAIIDRYNQRLELVP
LFDVLQKIGPYAIIATMDKETKGPVVVFNTLRESEGATMKRETVIVANEY
DGGKDVPKNVSYVVIGSTVDVLSPVSVRARNERHGLIACLDETKLAKLRG
LHGGVTDTLLC*
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mRNA from alignment at tig00000234_pilon:63586..64189-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra809.t1 ID=Ggra809.t1|Name=Ggra809.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=604bp|location=Sequence derived from alignment at tig00000234_pilon:63586..64189- (Gracilaria gracilis GNS1m male)
ATGAATGATTTGGGTTCAGTAATAGACAGGCTTGGTCACCAAGGCGAATC
TCATGATGTTGGACTCAGAGCTGCAGCTGATATGAACATTGTGAGAAACG
TTATCACTGCGATTATTGACAGATACAACCAACGTCTTGGTCTGGTCTCG
AATTGAGTCGGCGTGTCTTTTAATGCCGATAAACATGTCATTTCAACTTT
CATTGAAGAATCTGTTCGAGGTGGTTCCGCTTTCTCATTATCAACTTTAC
TCCGCAGAGCTGGTCCCGCTGTTCGACGTGTTGCAGAAAATCGGTCCCTA
TGCGATAATTGCTACGATGGATAAAGAGACTAAGGGCCCGGTCGTCGTGT
TCAATACGCTTAGAGAATCTGAAGGTGCAACTATGAAACGCGAAACCGTG
ATAGTCGCCAATGAATATGACGGGGGCAAAGATGTCCCGAAGAACGTTAG
CTATGTGGTAATCGGATCTACTGTTGATGTCCTTTCGCCTGTTTCTGTTC
GAGCTCGAAACGAACGCCATGGCCTCATTGCCTGCCTCGATGAAACTAAG
CTTGCCAAACTTCGAGGACTTCACGGTGGGGTCACAGATACGCTTTTGTG
TTAA
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Coding sequence (CDS) from alignment at tig00000234_pilon:63586..64189-

>Ggra809.t1 ID=Ggra809.t1|Name=Ggra809.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=486bp|location=Sequence derived from alignment at tig00000234_pilon:63586..64189- (Gracilaria gracilis GNS1m male)
ATGAATGATTTGGGTTCAGTAATAGACAGGCTTGGTCACCAAGGCGAATC
TCATGATGTTGGACTCAGAGCTGCAGCTGATATGAACATTGTGAGAAACG
TTATCACTGCGATTATTGACAGATACAACCAACGTCTTGAGCTGGTCCCG
CTGTTCGACGTGTTGCAGAAAATCGGTCCCTATGCGATAATTGCTACGAT
GGATAAAGAGACTAAGGGCCCGGTCGTCGTGTTCAATACGCTTAGAGAAT
CTGAAGGTGCAACTATGAAACGCGAAACCGTGATAGTCGCCAATGAATAT
GACGGGGGCAAAGATGTCCCGAAGAACGTTAGCTATGTGGTAATCGGATC
TACTGTTGATGTCCTTTCGCCTGTTTCTGTTCGAGCTCGAAACGAACGCC
ATGGCCTCATTGCCTGCCTCGATGAAACTAAGCTTGCCAAACTTCGAGGA
CTTCACGGTGGGGTCACAGATACGCTTTTGTGTTAA
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