Ggra8085.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8085.t1
Unique NameGgra8085.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length179
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000867_piloncontigtig00000867_pilon:637088..637692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8085Ggra8085Gracilaria gracilis GNS1m malegenetig00000867_pilon 637088..637692 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8085.t1Ggra8085.t1Gracilaria gracilis GNS1m malepolypeptidetig00000867_pilon 637088..637692 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8085.t1.start1Ggra8085.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000867_pilon 637088..637090 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8085.t1.CDS1Ggra8085.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000867_pilon 637088..637093 +
Ggra8085.t1.CDS2Ggra8085.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000867_pilon 637162..637692 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8085.t1.exon1Ggra8085.t1.exon1Gracilaria gracilis GNS1m maleexontig00000867_pilon 637088..637093 +
Ggra8085.t1.exon2Ggra8085.t1.exon2Gracilaria gracilis GNS1m maleexontig00000867_pilon 637162..637692 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8085.t1.intron1Ggra8085.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000867_pilon 637094..637161 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8085.t1.stop1Ggra8085.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000867_pilon 637690..637692 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8085.t1 ID=Ggra8085.t1|Name=Ggra8085.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=179bp
MHPCSEHHRVSRELSVTFSYAQITRCKPRSSPSRRKSYQIIHFNHHDEQP
STKRAGQLSHPCVQALQRGVLPEDSLPTPPVGSTFNPSVRRTHHSAMCVV
PQRVFAQHRSLQAHAVRSPSTATVSVSTARLQLVVLLRKGSQQTYEHGAF
ASSSVSLRSVRKVVREEGAYDISRATGT*
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spliced messenger RNA

>Ggra8085.t1 ID=Ggra8085.t1|Name=Ggra8085.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=537bp|location=Sequence derived from alignment at tig00000867_pilon:637088..637692+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCCCTGCTCCGAGCACCACCGCGTCAGCCGAGAGCTCTCTGTCAC
GTTCTCCTACGCCCAAATTACCCGCTGTAAACCCCGCTCGTCGCCATCTC
GACGCAAAAGCTACCAAATCATCCACTTCAATCATCACGACGAGCAACCT
AGTACAAAACGCGCAGGGCAGCTCTCGCATCCATGCGTGCAAGCACTGCA
GCGTGGTGTTCTCCCGGAAGATTCGCTTCCTACACCACCTGTTGGTAGCA
CATTCAATCCAAGTGTTCGACGGACGCACCATTCTGCCATGTGCGTCGTG
CCCCAGCGCGTTTTTGCGCAACACCGATCGCTCCAAGCACATGCAGTGCG
TTCACCGTCGACTGCGACCGTTTCCGTGTCCACTGCCAGATTGCAACTCG
TCGTTCTTCTTCGCAAAGGATCTCAGCAAACATACGAGCACGGTGCATTT
GCGTCATCGTCCGTTTCGCTGCGAAGTGTGCGGAAGGTCGTTCGGGAAGA
GGGAGCATATGACATCTCACGTGCGACGGGTACATGA
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protein sequence of Ggra8085.t1

>Ggra8085.t1 ID=Ggra8085.t1|Name=Ggra8085.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=179bp
MHPCSEHHRVSRELSVTFSYAQITRCKPRSSPSRRKSYQIIHFNHHDEQP
STKRAGQLSHPCVQALQRGVLPEDSLPTPPVGSTFNPSVRRTHHSAMCVV
PQRVFAQHRSLQAHAVRSPSTATVSVSTARLQLVVLLRKGSQQTYEHGAF
ASSSVSLRSVRKVVREEGAYDISRATGT*
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mRNA from alignment at tig00000867_pilon:637088..637692+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8085.t1 ID=Ggra8085.t1|Name=Ggra8085.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=605bp|location=Sequence derived from alignment at tig00000867_pilon:637088..637692+ (Gracilaria gracilis GNS1m male)
ATGCACGTACGATTTCTTTGTTCGCCCAACTCAATTCCGCCTGATACTAA
CGCTGCCCCACCTATACCTTTAAGCCCTGCTCCGAGCACCACCGCGTCAG
CCGAGAGCTCTCTGTCACGTTCTCCTACGCCCAAATTACCCGCTGTAAAC
CCCGCTCGTCGCCATCTCGACGCAAAAGCTACCAAATCATCCACTTCAAT
CATCACGACGAGCAACCTAGTACAAAACGCGCAGGGCAGCTCTCGCATCC
ATGCGTGCAAGCACTGCAGCGTGGTGTTCTCCCGGAAGATTCGCTTCCTA
CACCACCTGTTGGTAGCACATTCAATCCAAGTGTTCGACGGACGCACCAT
TCTGCCATGTGCGTCGTGCCCCAGCGCGTTTTTGCGCAACACCGATCGCT
CCAAGCACATGCAGTGCGTTCACCGTCGACTGCGACCGTTTCCGTGTCCA
CTGCCAGATTGCAACTCGTCGTTCTTCTTCGCAAAGGATCTCAGCAAACA
TACGAGCACGGTGCATTTGCGTCATCGTCCGTTTCGCTGCGAAGTGTGCG
GAAGGTCGTTCGGGAAGAGGGAGCATATGACATCTCACGTGCGACGGGTA
CATGA
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Coding sequence (CDS) from alignment at tig00000867_pilon:637088..637692+

>Ggra8085.t1 ID=Ggra8085.t1|Name=Ggra8085.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=537bp|location=Sequence derived from alignment at tig00000867_pilon:637088..637692+ (Gracilaria gracilis GNS1m male)
ATGCACCCCTGCTCCGAGCACCACCGCGTCAGCCGAGAGCTCTCTGTCAC
GTTCTCCTACGCCCAAATTACCCGCTGTAAACCCCGCTCGTCGCCATCTC
GACGCAAAAGCTACCAAATCATCCACTTCAATCATCACGACGAGCAACCT
AGTACAAAACGCGCAGGGCAGCTCTCGCATCCATGCGTGCAAGCACTGCA
GCGTGGTGTTCTCCCGGAAGATTCGCTTCCTACACCACCTGTTGGTAGCA
CATTCAATCCAAGTGTTCGACGGACGCACCATTCTGCCATGTGCGTCGTG
CCCCAGCGCGTTTTTGCGCAACACCGATCGCTCCAAGCACATGCAGTGCG
TTCACCGTCGACTGCGACCGTTTCCGTGTCCACTGCCAGATTGCAACTCG
TCGTTCTTCTTCGCAAAGGATCTCAGCAAACATACGAGCACGGTGCATTT
GCGTCATCGTCCGTTTCGCTGCGAAGTGTGCGGAAGGTCGTTCGGGAAGA
GGGAGCATATGACATCTCACGTGCGACGGGTACATGA
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