Ggra8075.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8075.t1
Unique NameGgra8075.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length386
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000867_piloncontigtig00000867_pilon:380391..381959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708615.1
PFAMsBK_channel_a,Ion_trans,Ion_trans_2
Max annot lvl2759|Eukaryota
KEGG koko:K04936,ko:K04946
KEGG TC1.A.1.3.1,1.A.1.3.2,1.A.1.3.3,1.A.1.3.4,1.A.1.3.7,1.A.1.3.8
KEGG Pathwayko04022,ko04270,ko04911,ko04924,ko04970,ko04972,map04022,map04270,map04911,map04924,map04970,map04972
Evalue1.22e-13
EggNOG OGsKOG1420@1|root,KOG1420@2759|Eukaryota
Descriptionlarge conductance calcium-activated potassium channel activity
COG categoryP
BRITEko00000,ko00001,ko04040
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8075Ggra8075Gracilaria gracilis GNS1m malegenetig00000867_pilon 380391..381959 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8075.t1Ggra8075.t1Gracilaria gracilis GNS1m malepolypeptidetig00000867_pilon 380391..381959 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8075.t1.start1Ggra8075.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000867_pilon 380391..380393 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8075.t1.CDS1Ggra8075.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000867_pilon 380391..380576 +
Ggra8075.t1.CDS2Ggra8075.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000867_pilon 380781..380847 +
Ggra8075.t1.CDS3Ggra8075.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000867_pilon 380920..381014 +
Ggra8075.t1.CDS4Ggra8075.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000867_pilon 381150..381959 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8075.t1.exon1Ggra8075.t1.exon1Gracilaria gracilis GNS1m maleexontig00000867_pilon 380391..380576 +
Ggra8075.t1.exon2Ggra8075.t1.exon2Gracilaria gracilis GNS1m maleexontig00000867_pilon 380781..380847 +
Ggra8075.t1.exon3Ggra8075.t1.exon3Gracilaria gracilis GNS1m maleexontig00000867_pilon 380920..381014 +
Ggra8075.t1.exon4Ggra8075.t1.exon4Gracilaria gracilis GNS1m maleexontig00000867_pilon 381150..381959 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8075.t1.intron1Ggra8075.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000867_pilon 380577..380780 +
Ggra8075.t1.intron2Ggra8075.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000867_pilon 380848..380919 +
Ggra8075.t1.intron3Ggra8075.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000867_pilon 381015..381149 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8075.t1.stop1Ggra8075.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000867_pilon 381957..381959 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8075.t1 ID=Ggra8075.t1|Name=Ggra8075.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=386bp
MCARTREVAAFALRLCCDSSVPAAAVVEPRAVAWCRLLLPAAAATRCVHC
RANARFHYHLHHVYVIFSRCFQIEPTVEIYFMVKSLQLFEQLGEPWETSI
GTTFDLTLANSFYFTVGLRRGLGSFVNAEATDHCVICGNVKWECLNAFVL
EFYGDDRNAKTKLVIICDQPNWSETVWINFFTSNIQYRDNVTYLEGSCVT
RDDFIRAQVETSKTVFILNNQHNPDTYAEDSETLKRILTIRSYTPNLPIY
SMCALRDFILQITFALEQVDEKDDAEEVTSRRASGMNLRSQTMDPSSPDM
AGLSSLADELNPHMGDFEDEGDDDDGLLVASYDGSSDLKSEALCMQEIEM
LLLAKNFFCNGISTLLANLILRLTPMLKDEDPIWA*
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spliced messenger RNA

>Ggra8075.t1 ID=Ggra8075.t1|Name=Ggra8075.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1158bp|location=Sequence derived from alignment at tig00000867_pilon:380391..381959+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGCGCGCACGCGCGAGGTTGCTGCCTTTGCTCTGCGTCTCTGCTG
CGATTCGTCTGTGCCCGCTGCCGCCGTCGTTGAGCCACGCGCCGTtgctt
ggtgccgcctgctgctgccggctgctgctgcCACCCGCTGCGTGCACTGC
CGAGCGAATGCTCGTTTCCACTATCATCTGCATCATGTTTACGTCATATT
TTCGCGCTGCTTTCAGATAGAACCTACGGTAGAGATTTACTTCATGGTTA
AGAGTCTGCAGCTCTTCGAGCAGCTGGGAGAGCCTTGGGAGACTTCGATT
GGCACCACCTTTGACCTCACACTTGCCAACTCGTTTTACTTTACCGTTGG
GTTGCGCCGTGGACTGGGCTCGTTTGTCAATGCTGAGGCCACCGATCATT
GCGTCATATGTGGAAACGTAAAATGGGAGTGCCTCAACGCCTTTGTGCTC
GAGTTTTATGGCGATGACAGAAATGCCAAGACGAAGCTCGTTATCATATG
CGATCAGCCGAACTGGTCGGAAACCGTATGGATCAACTTCTTTACTTCCA
ACATTCAATATCGTGATAACGTCACGTATCTCGAGGGCTCATGCGTCACA
CGTGATGACTTCATTCGCGCACAGGTGGAGACATCAAAGACTGTATTCAT
ACTCAACAACCAGCATAACCCAGACACTTATGCGGAAGACTCCGAAACTC
TTAAGCGAATTCTTACTATTAGGTCCTACACGCCCAATCTCCCTATATAC
TCCATGTGTGCTCTTCGTGATTTTATTTTGCAAATCACGTTTGCTCTTGA
GCAAGTCGATGAAAAGGACGACGCGGAAGAAGTGACGTCTCGAAGAGCAT
CCGGAATGAACCTGCGTTCCCAGACGATGGACCCATCTTCGCCAGATATG
GCAGGCTTGTCTTCTCTTGCTGACGAACTTAATCCTCATATGGGTGACTT
CGAGGACGAAGGTGATGACGATGATGGACTGCTTGTTGCATCGTATGACG
GCTCGTCAGATTTGAAGTCTGAGGCTCTCTGTATGCAAGAAATCGAAATG
TTGCTCTTGGCGAAGAATTTCTTCTGCAACGGCATATCTACTCTGTTGGC
AAACTTGATTCTTCGCCTCACTCCAATGCTGAAAGATGAGGACCCGATAT
GGGCTTGA
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protein sequence of Ggra8075.t1

>Ggra8075.t1 ID=Ggra8075.t1|Name=Ggra8075.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=386bp
MCARTREVAAFALRLCCDSSVPAAAVVEPRAVAWCRLLLPAAAATRCVHC
RANARFHYHLHHVYVIFSRCFQIEPTVEIYFMVKSLQLFEQLGEPWETSI
GTTFDLTLANSFYFTVGLRRGLGSFVNAEATDHCVICGNVKWECLNAFVL
EFYGDDRNAKTKLVIICDQPNWSETVWINFFTSNIQYRDNVTYLEGSCVT
RDDFIRAQVETSKTVFILNNQHNPDTYAEDSETLKRILTIRSYTPNLPIY
SMCALRDFILQITFALEQVDEKDDAEEVTSRRASGMNLRSQTMDPSSPDM
AGLSSLADELNPHMGDFEDEGDDDDGLLVASYDGSSDLKSEALCMQEIEM
LLLAKNFFCNGISTLLANLILRLTPMLKDEDPIWA*
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mRNA from alignment at tig00000867_pilon:380391..381959+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8075.t1 ID=Ggra8075.t1|Name=Ggra8075.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1569bp|location=Sequence derived from alignment at tig00000867_pilon:380391..381959+ (Gracilaria gracilis GNS1m male)
ATGTGCGCGCGCACGCGCGAGGTTGCTGCCTTTGCTCTGCGTCTCTGCTG
CGATTCGTCTGTGCCCGCTGCCGCCGTCGTTGAGCCACGCGCCGTtgctt
ggtgccgcctgctgctgccggctgctgctgcCACCCGCTGCGTGCACTGC
CGAGCGAATGCTCGTTTCCACTATCATCTGCATCATGTATGTGTACACAT
CAGTCTCTCGCTCCTTATCTCCCAGAAATGCGTCTCCGTCGTTCTCTACT
TCAACATTTTCTGCAAGCTTGTGTACGCCACGCGCCCCCTTTCCTTCGTG
CTCGGCCTTGAAGCCATTGTGGACGTCTTCAGTCTGGCTTCTCTGCTCAT
GGCAAAGCGAACCCATTGGATTAACTTTTCTTTTCTTCAGGTTTACGTCA
TATTTTCGCGCTGCTTTCAGATAGAACCTACGGTAGAGATTTACTTCATG
GTTAAGAGTTCACCATTTCATCGCTAACTGACGCGCTTGGCCCTCGAGTT
CATTCTATTCATCTACGTGTTTGCGTCAGGTCTGCAGCTCTTCGAGCAGC
TGGGAGAGCCTTGGGAGACTTCGATTGGCACCACCTTTGACCTCACACTT
GCCAACTCGTTTTACTTTACCGTTGTTACTATATTCGCAGTGGGCTTTGG
TGACTTTGTTCCATTTACAATGCTGGGCCGACTGTGGATCATCTTCATCA
TTGTGTTTTGCGCCTACCTAGTTTCTCGTAAAATTGGCCAAGTTGTCGAT
GTTGTCTAGGGGTTGCGCCGTGGACTGGGCTCGTTTGTCAATGCTGAGGC
CACCGATCATTGCGTCATATGTGGAAACGTAAAATGGGAGTGCCTCAACG
CCTTTGTGCTCGAGTTTTATGGCGATGACAGAAATGCCAAGACGAAGCTC
GTTATCATATGCGATCAGCCGAACTGGTCGGAAACCGTATGGATCAACTT
CTTTACTTCCAACATTCAATATCGTGATAACGTCACGTATCTCGAGGGCT
CATGCGTCACACGTGATGACTTCATTCGCGCACAGGTGGAGACATCAAAG
ACTGTATTCATACTCAACAACCAGCATAACCCAGACACTTATGCGGAAGA
CTCCGAAACTCTTAAGCGAATTCTTACTATTAGGTCCTACACGCCCAATC
TCCCTATATACTCCATGTGTGCTCTTCGTGATTTTATTTTGCAAATCACG
TTTGCTCTTGAGCAAGTCGATGAAAAGGACGACGCGGAAGAAGTGACGTC
TCGAAGAGCATCCGGAATGAACCTGCGTTCCCAGACGATGGACCCATCTT
CGCCAGATATGGCAGGCTTGTCTTCTCTTGCTGACGAACTTAATCCTCAT
ATGGGTGACTTCGAGGACGAAGGTGATGACGATGATGGACTGCTTGTTGC
ATCGTATGACGGCTCGTCAGATTTGAAGTCTGAGGCTCTCTGTATGCAAG
AAATCGAAATGTTGCTCTTGGCGAAGAATTTCTTCTGCAACGGCATATCT
ACTCTGTTGGCAAACTTGATTCTTCGCCTCACTCCAATGCTGAAAGATGA
GGACCCGATATGGGCTTGA
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Coding sequence (CDS) from alignment at tig00000867_pilon:380391..381959+

>Ggra8075.t1 ID=Ggra8075.t1|Name=Ggra8075.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1158bp|location=Sequence derived from alignment at tig00000867_pilon:380391..381959+ (Gracilaria gracilis GNS1m male)
ATGTGCGCGCGCACGCGCGAGGTTGCTGCCTTTGCTCTGCGTCTCTGCTG
CGATTCGTCTGTGCCCGCTGCCGCCGTCGTTGAGCCACGCGCCGTtgctt
ggtgccgcctgctgctgccggctgctgctgcCACCCGCTGCGTGCACTGC
CGAGCGAATGCTCGTTTCCACTATCATCTGCATCATGTTTACGTCATATT
TTCGCGCTGCTTTCAGATAGAACCTACGGTAGAGATTTACTTCATGGTTA
AGAGTCTGCAGCTCTTCGAGCAGCTGGGAGAGCCTTGGGAGACTTCGATT
GGCACCACCTTTGACCTCACACTTGCCAACTCGTTTTACTTTACCGTTGG
GTTGCGCCGTGGACTGGGCTCGTTTGTCAATGCTGAGGCCACCGATCATT
GCGTCATATGTGGAAACGTAAAATGGGAGTGCCTCAACGCCTTTGTGCTC
GAGTTTTATGGCGATGACAGAAATGCCAAGACGAAGCTCGTTATCATATG
CGATCAGCCGAACTGGTCGGAAACCGTATGGATCAACTTCTTTACTTCCA
ACATTCAATATCGTGATAACGTCACGTATCTCGAGGGCTCATGCGTCACA
CGTGATGACTTCATTCGCGCACAGGTGGAGACATCAAAGACTGTATTCAT
ACTCAACAACCAGCATAACCCAGACACTTATGCGGAAGACTCCGAAACTC
TTAAGCGAATTCTTACTATTAGGTCCTACACGCCCAATCTCCCTATATAC
TCCATGTGTGCTCTTCGTGATTTTATTTTGCAAATCACGTTTGCTCTTGA
GCAAGTCGATGAAAAGGACGACGCGGAAGAAGTGACGTCTCGAAGAGCAT
CCGGAATGAACCTGCGTTCCCAGACGATGGACCCATCTTCGCCAGATATG
GCAGGCTTGTCTTCTCTTGCTGACGAACTTAATCCTCATATGGGTGACTT
CGAGGACGAAGGTGATGACGATGATGGACTGCTTGTTGCATCGTATGACG
GCTCGTCAGATTTGAAGTCTGAGGCTCTCTGTATGCAAGAAATCGAAATG
TTGCTCTTGGCGAAGAATTTCTTCTGCAACGGCATATCTACTCTGTTGGC
AAACTTGATTCTTCGCCTCACTCCAATGCTGAAAGATGAGGACCCGATAT
GGGCTTGA
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