Ggra8010.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8010.t1
Unique NameGgra8010.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length475
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:738648..740072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706511.1
PFAMsSHMT
Max annot lvl2759|Eukaryota
KEGG rclassRC00022,RC00112,RC01583,RC02958
KEGG koko:K00600
KEGG ReactionR00945,R09099
KEGG Pathwayko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523
KEGG ModuleM00140,M00141,M00346,M00532
GOsGO:0003674,GO:0003824,GO:0004372,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016740,GO:0016741,GO:0016742,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013
Evalue6.41e-250
EggNOG OGsCOG0112@1|root,KOG2467@2759|Eukaryota
EC2.1.2.1
Descriptionglycine hydroxymethyltransferase activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8010Ggra8010Gracilaria gracilis GNS1m malegenetig00000073_pilon 738648..740072 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8010.t1.start1Ggra8010.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 738648..738650 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8010.t1.CDS1Ggra8010.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 738648..740072 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8010.t1.exon1Ggra8010.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 738648..740072 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8010.t1.stop1Ggra8010.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 740070..740072 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8010.t1Ggra8010.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 738648..740072 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8010.t1 ID=Ggra8010.t1|Name=Ggra8010.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=475bp
MAECYVNGHYSDSFAGFEGNRPVEQVDPELFELLRREKQRQYEGIELIAS
ENFTSRAVMEVLGSSLTNKYSEGLPGARYYGGNEVIDDIERLVQKRALEC
FGLDASAWGVNVQPYSGSTANFALYTAVLNPHDRIMGLDLPSGGHLTHGF
YTAKRKISATSVYFESLPYKVDEKTGFIDYDKLEESAMVFRPKMLICGAS
AYPRDWDFERLRQIADKCGALLMCDMAHISGLVASGHASSPFKLCDFVTS
TTHKSLRGPRQGLIFYRRGPILDAQGNDSGKVYQWESKVNMAVFPGCQGG
PHNNTIGALAVALKEAMTPQFKQYCKQVCDNARVLGEELVKKGYTLVTGG
TENHLVLWDLRPQGVGGSKVEKVCDLAHITLNKNAVAGDTSALNPGGVRI
GAPAMTSRGLVQSEFVQIAAFLDRAVMLAISIQKEAGTKMKDFTPAAEKD
AGVKALRAEVIEFSKAFPMPGGVM*
back to top

spliced messenger RNA

>Ggra8010.t1 ID=Ggra8010.t1|Name=Ggra8010.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1425bp|location=Sequence derived from alignment at tig00000073_pilon:738648..740072+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGAGTGCTACGTGAACGGCCATTACAGCGACAGCTTTGCCGGCTT
TGAGGGCAATCGCCCCGTTGAGCAAGTCGATCCGGAACTGTTCGAGCTTC
TTCGCCGCGAGAAGCAACGCCAGTATGAGGGCATCGAGCTCATCGCCAGC
GAGAACTTCACCTCCCGCGCAGTGATGGAGGTGTTGGGATCGTCGTTGAC
CAACAAGTACTCGGAGGGTCTCCCCGGCGCCCGTTACTATGGTGGAAATG
AAGTCATCGACGACATTGAACGCCTCGTGCAGAAGCGCGCGCTCGAGTGC
TTTGGATTGGATGCGTCCGCTTGGGGCGTCAACGTGCAGCCCTACTCGGG
CTCCACCGCCAACTTTGCTCTGTACACGGCTGTGCTCAACCCGCATGATC
GCATCATGGGGCTCGATCTGCCGTCCGGTGGTCACCTGACGCACGGCTTC
TACACGGCGAAGAGGAAGATTTCGGCCACCAGTGTGTACTTTGAGTCGCT
TCCGTACAAGGTGGATGAGAAGACTGGCTTCATTGACTACGACAAGCTTG
AGGAGAGTGCGATGGTGTTCCGTCCCAAGATGCTCATCTGTGGCGCCAGC
GCGTACCCTCGCGACTGGGACTTTGAACGCTTGCGCCAGATTGCCGACAA
GTGTGGCGCGCTGTTGATGTGCGACATGGCTCACATCTCCGGTCTTGTGG
CCAGTGGCCACGCGAGCAGCCCGTTCAAACTGTGCGACTTTGTGACGTCC
ACCACGCACAAGAGCCTGCGTGGGCCTCGCCAGGGGCTGATATTCTACCG
ACGAGGGCCGATTCTGGACGCGCAAGGCAACGACAGCGGCAAGGTGTACC
AGTGGGAAAGCAAGGTGAACATGGCGGTGTTCCCTGGATGCCAGGGCGGG
CCGCACAACAACACGATCGGCGCGCTGGCGGTGGCGTTGAAGGAGGCGAT
GACGCCGCAGTTCAAGCAGTACTGCAAGCAGGTGTGCGACAACGCGCGCG
TGCTCGGCGAGGAGCTGGTGAAGAAGGGCTACACGCTGGTGACGGGTGGC
ACGGAGAACCACTTGGTGCTGTGGGACCTGCGCCCGCAGGGTGTTGGCGG
CTCCAAGGTGGAGAAGGTGTGCGACCTGGCGCACATCACGCTGAACAAGA
ACGCGGTGGCTGGGGATACGTCGGCGCTAAACCCCGGTGGGGTGCGCATC
GGGGCGCCGGCGATGACGTCGCGCGGTCTGGTGCAGTCGGAGTTTGTGCA
GATCGCGGCGTTTTTGGACCGCGCGGTGATGCTGGCGATTAGCATTCAGA
AGGAGGCTGGGACGAAGATGAAGGACTTTACTCCGGCGGCTGAGAAGGAT
GCCGGGGTGAAGGCGCTTCGCGCGGAGGTGATTGAGTTCTCCAAGGCGTT
CCCGATGCCTGGCGGCGTGATGTAA
back to top

protein sequence of Ggra8010.t1

>Ggra8010.t1 ID=Ggra8010.t1|Name=Ggra8010.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=475bp
MAECYVNGHYSDSFAGFEGNRPVEQVDPELFELLRREKQRQYEGIELIAS
ENFTSRAVMEVLGSSLTNKYSEGLPGARYYGGNEVIDDIERLVQKRALEC
FGLDASAWGVNVQPYSGSTANFALYTAVLNPHDRIMGLDLPSGGHLTHGF
YTAKRKISATSVYFESLPYKVDEKTGFIDYDKLEESAMVFRPKMLICGAS
AYPRDWDFERLRQIADKCGALLMCDMAHISGLVASGHASSPFKLCDFVTS
TTHKSLRGPRQGLIFYRRGPILDAQGNDSGKVYQWESKVNMAVFPGCQGG
PHNNTIGALAVALKEAMTPQFKQYCKQVCDNARVLGEELVKKGYTLVTGG
TENHLVLWDLRPQGVGGSKVEKVCDLAHITLNKNAVAGDTSALNPGGVRI
GAPAMTSRGLVQSEFVQIAAFLDRAVMLAISIQKEAGTKMKDFTPAAEKD
AGVKALRAEVIEFSKAFPMPGGVM*
back to top

mRNA from alignment at tig00000073_pilon:738648..740072+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8010.t1 ID=Ggra8010.t1|Name=Ggra8010.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1425bp|location=Sequence derived from alignment at tig00000073_pilon:738648..740072+ (Gracilaria gracilis GNS1m male)
ATGGCGGAGTGCTACGTGAACGGCCATTACAGCGACAGCTTTGCCGGCTT
TGAGGGCAATCGCCCCGTTGAGCAAGTCGATCCGGAACTGTTCGAGCTTC
TTCGCCGCGAGAAGCAACGCCAGTATGAGGGCATCGAGCTCATCGCCAGC
GAGAACTTCACCTCCCGCGCAGTGATGGAGGTGTTGGGATCGTCGTTGAC
CAACAAGTACTCGGAGGGTCTCCCCGGCGCCCGTTACTATGGTGGAAATG
AAGTCATCGACGACATTGAACGCCTCGTGCAGAAGCGCGCGCTCGAGTGC
TTTGGATTGGATGCGTCCGCTTGGGGCGTCAACGTGCAGCCCTACTCGGG
CTCCACCGCCAACTTTGCTCTGTACACGGCTGTGCTCAACCCGCATGATC
GCATCATGGGGCTCGATCTGCCGTCCGGTGGTCACCTGACGCACGGCTTC
TACACGGCGAAGAGGAAGATTTCGGCCACCAGTGTGTACTTTGAGTCGCT
TCCGTACAAGGTGGATGAGAAGACTGGCTTCATTGACTACGACAAGCTTG
AGGAGAGTGCGATGGTGTTCCGTCCCAAGATGCTCATCTGTGGCGCCAGC
GCGTACCCTCGCGACTGGGACTTTGAACGCTTGCGCCAGATTGCCGACAA
GTGTGGCGCGCTGTTGATGTGCGACATGGCTCACATCTCCGGTCTTGTGG
CCAGTGGCCACGCGAGCAGCCCGTTCAAACTGTGCGACTTTGTGACGTCC
ACCACGCACAAGAGCCTGCGTGGGCCTCGCCAGGGGCTGATATTCTACCG
ACGAGGGCCGATTCTGGACGCGCAAGGCAACGACAGCGGCAAGGTGTACC
AGTGGGAAAGCAAGGTGAACATGGCGGTGTTCCCTGGATGCCAGGGCGGG
CCGCACAACAACACGATCGGCGCGCTGGCGGTGGCGTTGAAGGAGGCGAT
GACGCCGCAGTTCAAGCAGTACTGCAAGCAGGTGTGCGACAACGCGCGCG
TGCTCGGCGAGGAGCTGGTGAAGAAGGGCTACACGCTGGTGACGGGTGGC
ACGGAGAACCACTTGGTGCTGTGGGACCTGCGCCCGCAGGGTGTTGGCGG
CTCCAAGGTGGAGAAGGTGTGCGACCTGGCGCACATCACGCTGAACAAGA
ACGCGGTGGCTGGGGATACGTCGGCGCTAAACCCCGGTGGGGTGCGCATC
GGGGCGCCGGCGATGACGTCGCGCGGTCTGGTGCAGTCGGAGTTTGTGCA
GATCGCGGCGTTTTTGGACCGCGCGGTGATGCTGGCGATTAGCATTCAGA
AGGAGGCTGGGACGAAGATGAAGGACTTTACTCCGGCGGCTGAGAAGGAT
GCCGGGGTGAAGGCGCTTCGCGCGGAGGTGATTGAGTTCTCCAAGGCGTT
CCCGATGCCTGGCGGCGTGATGTAA
back to top

Coding sequence (CDS) from alignment at tig00000073_pilon:738648..740072+

>Ggra8010.t1 ID=Ggra8010.t1|Name=Ggra8010.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1425bp|location=Sequence derived from alignment at tig00000073_pilon:738648..740072+ (Gracilaria gracilis GNS1m male)
ATGGCGGAGTGCTACGTGAACGGCCATTACAGCGACAGCTTTGCCGGCTT
TGAGGGCAATCGCCCCGTTGAGCAAGTCGATCCGGAACTGTTCGAGCTTC
TTCGCCGCGAGAAGCAACGCCAGTATGAGGGCATCGAGCTCATCGCCAGC
GAGAACTTCACCTCCCGCGCAGTGATGGAGGTGTTGGGATCGTCGTTGAC
CAACAAGTACTCGGAGGGTCTCCCCGGCGCCCGTTACTATGGTGGAAATG
AAGTCATCGACGACATTGAACGCCTCGTGCAGAAGCGCGCGCTCGAGTGC
TTTGGATTGGATGCGTCCGCTTGGGGCGTCAACGTGCAGCCCTACTCGGG
CTCCACCGCCAACTTTGCTCTGTACACGGCTGTGCTCAACCCGCATGATC
GCATCATGGGGCTCGATCTGCCGTCCGGTGGTCACCTGACGCACGGCTTC
TACACGGCGAAGAGGAAGATTTCGGCCACCAGTGTGTACTTTGAGTCGCT
TCCGTACAAGGTGGATGAGAAGACTGGCTTCATTGACTACGACAAGCTTG
AGGAGAGTGCGATGGTGTTCCGTCCCAAGATGCTCATCTGTGGCGCCAGC
GCGTACCCTCGCGACTGGGACTTTGAACGCTTGCGCCAGATTGCCGACAA
GTGTGGCGCGCTGTTGATGTGCGACATGGCTCACATCTCCGGTCTTGTGG
CCAGTGGCCACGCGAGCAGCCCGTTCAAACTGTGCGACTTTGTGACGTCC
ACCACGCACAAGAGCCTGCGTGGGCCTCGCCAGGGGCTGATATTCTACCG
ACGAGGGCCGATTCTGGACGCGCAAGGCAACGACAGCGGCAAGGTGTACC
AGTGGGAAAGCAAGGTGAACATGGCGGTGTTCCCTGGATGCCAGGGCGGG
CCGCACAACAACACGATCGGCGCGCTGGCGGTGGCGTTGAAGGAGGCGAT
GACGCCGCAGTTCAAGCAGTACTGCAAGCAGGTGTGCGACAACGCGCGCG
TGCTCGGCGAGGAGCTGGTGAAGAAGGGCTACACGCTGGTGACGGGTGGC
ACGGAGAACCACTTGGTGCTGTGGGACCTGCGCCCGCAGGGTGTTGGCGG
CTCCAAGGTGGAGAAGGTGTGCGACCTGGCGCACATCACGCTGAACAAGA
ACGCGGTGGCTGGGGATACGTCGGCGCTAAACCCCGGTGGGGTGCGCATC
GGGGCGCCGGCGATGACGTCGCGCGGTCTGGTGCAGTCGGAGTTTGTGCA
GATCGCGGCGTTTTTGGACCGCGCGGTGATGCTGGCGATTAGCATTCAGA
AGGAGGCTGGGACGAAGATGAAGGACTTTACTCCGGCGGCTGAGAAGGAT
GCCGGGGTGAAGGCGCTTCGCGCGGAGGTGATTGAGTTCTCCAAGGCGTT
CCCGATGCCTGGCGGCGTGATGTAA
back to top