Ggra8004.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8004.t1
Unique NameGgra8004.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length694
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:723110..725264 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707013.1
Preferred nameACX6
PFAMsACOX,Acyl-CoA_dh_1,Acyl-CoA_dh_M
Max annot lvl2759|Eukaryota
KEGG rclassRC00052,RC00076
KEGG koko:K00232
KEGG ReactionR01175,R01279,R03777,R03857,R03990,R04751,R04754,R07888,R07892,R07896,R07934,R07950
KEGG Pathwayko00071,ko00592,ko01040,ko01100,ko01110,ko01212,ko03320,ko04024,ko04146,map00071,map00592,map01040,map01100,map01110,map01212,map03320,map04024,map04146
KEGG ModuleM00087,M00113
GOsGO:0000166,GO:0003674,GO:0003824,GO:0003995,GO:0003997,GO:0005488,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016491,GO:0016627,GO:0016634,GO:0019395,GO:0019752,GO:0030258,GO:0032787,GO:0033539,GO:0034440,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0046395,GO:0048037,GO:0050660,GO:0050662,GO:0051791,GO:0055114,GO:0071704,GO:0072329,GO:0097159,GO:1901265,GO:1901363,GO:1901575
Evalue3.28e-200
EggNOG OGsCOG1960@1|root,KOG0135@2759|Eukaryota
EC1.3.3.6
Descriptionacyl-CoA oxidase activity
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8004Ggra8004Gracilaria gracilis GNS1m malegenetig00000073_pilon 723110..725264 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8004.t1Ggra8004.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 723110..725264 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8004.t1.stop1Ggra8004.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 723110..723112 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8004.t1.CDS1Ggra8004.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 723110..724121 -
Ggra8004.t1.CDS2Ggra8004.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000073_pilon 724195..725264 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8004.t1.exon1Ggra8004.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 723110..724121 -
Ggra8004.t1.exon2Ggra8004.t1.exon2Gracilaria gracilis GNS1m maleexontig00000073_pilon 724195..725264 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8004.t1.intron1Ggra8004.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000073_pilon 724122..724194 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8004.t1.start1Ggra8004.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 725262..725264 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8004.t1 ID=Ggra8004.t1|Name=Ggra8004.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=694bp
MSALPSSRKLDVVHTSHRKVALLHSPVLSSSCPASSQARTDIFDKAAQEF
TLNQIPHLPPAHLQWMHEAQPSQTHQTIFDVHKMRALLDHHNLKLRDTLY
QLFEQPDFHASPDLSLSQQRAHVMKMWKKVAALGYLQNSISAGTVEGRQR
YEAVIESCGLLSHSLDIKMSVHYGLFGATIKLLGDHQQASKWLPLTESCH
MLGCFALTELGHGSNARGVETIATYHVPSRTFIINTPTDSAQKYWIGGAY
QTARWTVCFAQLYVKGVCYGVHPFLVRIRNEDGSNVRGVTLGDCGHKCGL
NGVDNGRIWFDNVSVPLHQMLRRYSQVSEDGKYTSAFKSADERFGASLAS
LSGGRVSVAAGCLNQAKIGLSIAIRYALSRRAFGPRNGEEVRLLDYQSHQ
YRLIPGLATTYVMLIALNDLKYVWHHQQLGKKLHTWSSGFKALMTWHSLA
TLQEAREACGGQGYKSENRIGPIKNGHDVAVTYEGDNHILLQAVTKTVLP
EFVLGVKEGAVFKGHFSYLNDRHKLRDADLSAMDVSSAEFARIVFRRREA
AVFARLANRLQVMQKGGMTALEAFNSCGVLVEEAARAHTELVIIDLFDKR
MKELEEQGEVDLMKALRTCGSIYVLKRIDDDSGFVRNGALSGIDGFRAHE
RLLQMCKEMRPHVMDYVNGFGIPAHLLAPIAFDYVAHNSRARL*
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spliced messenger RNA

>Ggra8004.t1 ID=Ggra8004.t1|Name=Ggra8004.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2082bp|location=Sequence derived from alignment at tig00000073_pilon:723110..725264- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCTTTGCCTTCGTCTCGCAAGCTGGATGTTGTGCATACGTCGCA
TCGTAAAGTTGCTCTTCTTCATTCTCCCGTTCTTTCTTCCAGCTGTCCAG
CCTCTTCTCAAGCCCGTACAGACATCTTCGATAAAGCCGCGCAGGAGTTT
ACTTTAAATCAAATTCCCCACCTTCCTCCCGCGCACCTACAATGGATGCA
CGAAGCCCAACCTTCGCAAACCCACCAGACCATATTTGACGTGCACAAGA
TGAGGGCTTTGTTAGACCATCACAATTTAAAACTTCGTGATACCTTGTAC
CAGCTGTTTGAGCAGCCTGACTTCCACGCCAGTCCTGACCTTTCCCTGTC
CCAGCAACGAGCGCATGTCATGAAAATGTGGAAGAAAGTTGCTGCTTTGG
GCTACTTGCAAAACTCTATCTCGGCTGGCACCGTTGAGGGACGCCAGCGA
TACGAGGCTGTTATAGAGAGTTGTGGTCTACTTTCGCACAGTCTTGACAT
AAAAATGTCCGTTCACTACGGACTTTTTGGAGCCACTATAAAGCTCTTGG
GCGACCATCAACAGGCGTCCAAATGGCTACCTCTTACTGAGAGTTGTCAC
ATGCTGGGCTGTTTTGCACTCACGGAATTGGGACATGGTTCTAATGCGCG
CGGCGTTGAAACAATTGCCACTTATCATGTGCCTTCTCGAACGTTTATTA
TTAATACTCCTACCGATTCAGCACAGAAGTACTGGATTGGCGGTGCGTAT
CAGACCGCGAGATGGACCGTTTGCTTTGCGCAACTGTATGTTAAAGGCGT
TTGTTACGGCGTTCATCCTTTCTTGGTGCGTATTCGAAATGAAGACGGGA
GCAACGTTAGAGGTGTTACCTTGGGTGACTGTGGACATAAATGTGGTCTA
AATGGAGTGGACAACGGAAGAATCTGGTTTGACAATGTTTCTGTGCCCTT
GCATCAAATGCTGCGCCGTTACTCTCAGGTTTCTGAAGATGGCAAGTACA
CTTCAGCATTCAAGAGCGCCGATGAGCGTTTTGGGGCCTCTTTGGCGTCG
CTGTCGGGGGGACGAGTTAGTGTTGCGGCTGGTTGTCTTAATCAAGCCAA
GATTGGTCTGTCGATTGCCATCCGTTACGCACTGTCTCGGAGAGCATTTG
GGCCTCGCAACGGTGAAGAAGTACGTCTTCTGGATTACCAAAGCCATCAA
TATCGCCTCATTCCTGGACTAGCCACGACGTATGTCATGTTGATCGCACT
GAATGACCTCAAGTACGTATGGCATCACCAACAGCTTGGAAAGAAACTGC
ATACTTGGAGCTCCGGTTTCAAGGCACTTATGACGTGGCATTCACTCGCT
ACACTCCAAGAGGCGAGGGAAGCATGCGGTGGACAGGGATACAAATCGGA
GAATCGCATCGGACCTATTAAGAACGGTCACGATGTGGCTGTTACTTATG
AGGGAGACAATCACATTCTGCTACAAGCTGTCACCAAGACTGTGCTGCCT
GAATTCGTTCTGGGCGTGAAGGAAGGTGCGGTATTCAAGGGGCATTTCTC
GTACTTGAACGATCGCCACAAGTTGCGTGACGCAGATCTGAGCGCTATGG
ACGTGAGCAGCGCAGAGTTTGCGAGGATTGTGTTCCGTAGAAGGGAGGCG
GCAGTATTTGCAAGATTGGCAAATCGGTTGCAAGTGATGCAGAAGGGCGG
AATGACTGCTTTGGAGGCATTCAACAGTTGCGGTGTGTTGGTTGAGGAGG
CAGCTCGGGCGCATACGGAATTGGTGATCATTGATTTGTTTGATAAGAGA
ATGAAAGAACTTGAAGAACAAGGTGAGGTGGACTTGATGAAGGCATTACG
TACATGTGGTTCGATCTACGTGCTGAAACGCATTGACGATGATAGCGGAT
TTGTGAGAAATGGAGCGCTGAGTGGCATTGATGGCTTCCGTGCACATGAA
CGACTACTGCAAATGTGCAAGGAGATGCGACCACATGTGATGGACTATGT
GAATGGATTTGGCATTCCGGCTCATTTACTGGCGCCGATTGCTTTCGACT
ACGTTGCGCACAACAGTCGTGCCAGACTGTGA
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protein sequence of Ggra8004.t1

>Ggra8004.t1 ID=Ggra8004.t1|Name=Ggra8004.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=694bp
MSALPSSRKLDVVHTSHRKVALLHSPVLSSSCPASSQARTDIFDKAAQEF
TLNQIPHLPPAHLQWMHEAQPSQTHQTIFDVHKMRALLDHHNLKLRDTLY
QLFEQPDFHASPDLSLSQQRAHVMKMWKKVAALGYLQNSISAGTVEGRQR
YEAVIESCGLLSHSLDIKMSVHYGLFGATIKLLGDHQQASKWLPLTESCH
MLGCFALTELGHGSNARGVETIATYHVPSRTFIINTPTDSAQKYWIGGAY
QTARWTVCFAQLYVKGVCYGVHPFLVRIRNEDGSNVRGVTLGDCGHKCGL
NGVDNGRIWFDNVSVPLHQMLRRYSQVSEDGKYTSAFKSADERFGASLAS
LSGGRVSVAAGCLNQAKIGLSIAIRYALSRRAFGPRNGEEVRLLDYQSHQ
YRLIPGLATTYVMLIALNDLKYVWHHQQLGKKLHTWSSGFKALMTWHSLA
TLQEAREACGGQGYKSENRIGPIKNGHDVAVTYEGDNHILLQAVTKTVLP
EFVLGVKEGAVFKGHFSYLNDRHKLRDADLSAMDVSSAEFARIVFRRREA
AVFARLANRLQVMQKGGMTALEAFNSCGVLVEEAARAHTELVIIDLFDKR
MKELEEQGEVDLMKALRTCGSIYVLKRIDDDSGFVRNGALSGIDGFRAHE
RLLQMCKEMRPHVMDYVNGFGIPAHLLAPIAFDYVAHNSRARL*
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mRNA from alignment at tig00000073_pilon:723110..725264-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8004.t1 ID=Ggra8004.t1|Name=Ggra8004.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2155bp|location=Sequence derived from alignment at tig00000073_pilon:723110..725264- (Gracilaria gracilis GNS1m male)
ATGTCTGCTTTGCCTTCGTCTCGCAAGCTGGATGTTGTGCATACGTCGCA
TCGTAAAGTTGCTCTTCTTCATTCTCCCGTTCTTTCTTCCAGCTGTCCAG
CCTCTTCTCAAGCCCGTACAGACATCTTCGATAAAGCCGCGCAGGAGTTT
ACTTTAAATCAAATTCCCCACCTTCCTCCCGCGCACCTACAATGGATGCA
CGAAGCCCAACCTTCGCAAACCCACCAGACCATATTTGACGTGCACAAGA
TGAGGGCTTTGTTAGACCATCACAATTTAAAACTTCGTGATACCTTGTAC
CAGCTGTTTGAGCAGCCTGACTTCCACGCCAGTCCTGACCTTTCCCTGTC
CCAGCAACGAGCGCATGTCATGAAAATGTGGAAGAAAGTTGCTGCTTTGG
GCTACTTGCAAAACTCTATCTCGGCTGGCACCGTTGAGGGACGCCAGCGA
TACGAGGCTGTTATAGAGAGTTGTGGTCTACTTTCGCACAGTCTTGACAT
AAAAATGTCCGTTCACTACGGACTTTTTGGAGCCACTATAAAGCTCTTGG
GCGACCATCAACAGGCGTCCAAATGGCTACCTCTTACTGAGAGTTGTCAC
ATGCTGGGCTGTTTTGCACTCACGGAATTGGGACATGGTTCTAATGCGCG
CGGCGTTGAAACAATTGCCACTTATCATGTGCCTTCTCGAACGTTTATTA
TTAATACTCCTACCGATTCAGCACAGAAGTACTGGATTGGCGGTGCGTAT
CAGACCGCGAGATGGACCGTTTGCTTTGCGCAACTGTATGTTAAAGGCGT
TTGTTACGGCGTTCATCCTTTCTTGGTGCGTATTCGAAATGAAGACGGGA
GCAACGTTAGAGGTGTTACCTTGGGTGACTGTGGACATAAATGTGGTCTA
AATGGAGTGGACAACGGAAGAATCTGGTTTGACAATGTTTCTGTGCCCTT
GCATCAAATGCTGCGCCGTTACTCTCAGGTTTCTGAAGATGGCAAGTACA
CTTCAGCATTCAAGAGCGCCGATGAGCGTTTTGGGGCCTCTTTGGCGTCG
CTGTCGGGGGGACGAGTTAGGTAAGTTGCAAACTACTCCAAACGATCATC
TACTGTTGTTGTCGTGCTTCTAACATTGAATCAAAACGTGAAGTGTTGCG
GCTGGTTGTCTTAATCAAGCCAAGATTGGTCTGTCGATTGCCATCCGTTA
CGCACTGTCTCGGAGAGCATTTGGGCCTCGCAACGGTGAAGAAGTACGTC
TTCTGGATTACCAAAGCCATCAATATCGCCTCATTCCTGGACTAGCCACG
ACGTATGTCATGTTGATCGCACTGAATGACCTCAAGTACGTATGGCATCA
CCAACAGCTTGGAAAGAAACTGCATACTTGGAGCTCCGGTTTCAAGGCAC
TTATGACGTGGCATTCACTCGCTACACTCCAAGAGGCGAGGGAAGCATGC
GGTGGACAGGGATACAAATCGGAGAATCGCATCGGACCTATTAAGAACGG
TCACGATGTGGCTGTTACTTATGAGGGAGACAATCACATTCTGCTACAAG
CTGTCACCAAGACTGTGCTGCCTGAATTCGTTCTGGGCGTGAAGGAAGGT
GCGGTATTCAAGGGGCATTTCTCGTACTTGAACGATCGCCACAAGTTGCG
TGACGCAGATCTGAGCGCTATGGACGTGAGCAGCGCAGAGTTTGCGAGGA
TTGTGTTCCGTAGAAGGGAGGCGGCAGTATTTGCAAGATTGGCAAATCGG
TTGCAAGTGATGCAGAAGGGCGGAATGACTGCTTTGGAGGCATTCAACAG
TTGCGGTGTGTTGGTTGAGGAGGCAGCTCGGGCGCATACGGAATTGGTGA
TCATTGATTTGTTTGATAAGAGAATGAAAGAACTTGAAGAACAAGGTGAG
GTGGACTTGATGAAGGCATTACGTACATGTGGTTCGATCTACGTGCTGAA
ACGCATTGACGATGATAGCGGATTTGTGAGAAATGGAGCGCTGAGTGGCA
TTGATGGCTTCCGTGCACATGAACGACTACTGCAAATGTGCAAGGAGATG
CGACCACATGTGATGGACTATGTGAATGGATTTGGCATTCCGGCTCATTT
ACTGGCGCCGATTGCTTTCGACTACGTTGCGCACAACAGTCGTGCCAGAC
TGTGA
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Coding sequence (CDS) from alignment at tig00000073_pilon:723110..725264-

>Ggra8004.t1 ID=Ggra8004.t1|Name=Ggra8004.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2082bp|location=Sequence derived from alignment at tig00000073_pilon:723110..725264- (Gracilaria gracilis GNS1m male)
ATGTCTGCTTTGCCTTCGTCTCGCAAGCTGGATGTTGTGCATACGTCGCA
TCGTAAAGTTGCTCTTCTTCATTCTCCCGTTCTTTCTTCCAGCTGTCCAG
CCTCTTCTCAAGCCCGTACAGACATCTTCGATAAAGCCGCGCAGGAGTTT
ACTTTAAATCAAATTCCCCACCTTCCTCCCGCGCACCTACAATGGATGCA
CGAAGCCCAACCTTCGCAAACCCACCAGACCATATTTGACGTGCACAAGA
TGAGGGCTTTGTTAGACCATCACAATTTAAAACTTCGTGATACCTTGTAC
CAGCTGTTTGAGCAGCCTGACTTCCACGCCAGTCCTGACCTTTCCCTGTC
CCAGCAACGAGCGCATGTCATGAAAATGTGGAAGAAAGTTGCTGCTTTGG
GCTACTTGCAAAACTCTATCTCGGCTGGCACCGTTGAGGGACGCCAGCGA
TACGAGGCTGTTATAGAGAGTTGTGGTCTACTTTCGCACAGTCTTGACAT
AAAAATGTCCGTTCACTACGGACTTTTTGGAGCCACTATAAAGCTCTTGG
GCGACCATCAACAGGCGTCCAAATGGCTACCTCTTACTGAGAGTTGTCAC
ATGCTGGGCTGTTTTGCACTCACGGAATTGGGACATGGTTCTAATGCGCG
CGGCGTTGAAACAATTGCCACTTATCATGTGCCTTCTCGAACGTTTATTA
TTAATACTCCTACCGATTCAGCACAGAAGTACTGGATTGGCGGTGCGTAT
CAGACCGCGAGATGGACCGTTTGCTTTGCGCAACTGTATGTTAAAGGCGT
TTGTTACGGCGTTCATCCTTTCTTGGTGCGTATTCGAAATGAAGACGGGA
GCAACGTTAGAGGTGTTACCTTGGGTGACTGTGGACATAAATGTGGTCTA
AATGGAGTGGACAACGGAAGAATCTGGTTTGACAATGTTTCTGTGCCCTT
GCATCAAATGCTGCGCCGTTACTCTCAGGTTTCTGAAGATGGCAAGTACA
CTTCAGCATTCAAGAGCGCCGATGAGCGTTTTGGGGCCTCTTTGGCGTCG
CTGTCGGGGGGACGAGTTAGTGTTGCGGCTGGTTGTCTTAATCAAGCCAA
GATTGGTCTGTCGATTGCCATCCGTTACGCACTGTCTCGGAGAGCATTTG
GGCCTCGCAACGGTGAAGAAGTACGTCTTCTGGATTACCAAAGCCATCAA
TATCGCCTCATTCCTGGACTAGCCACGACGTATGTCATGTTGATCGCACT
GAATGACCTCAAGTACGTATGGCATCACCAACAGCTTGGAAAGAAACTGC
ATACTTGGAGCTCCGGTTTCAAGGCACTTATGACGTGGCATTCACTCGCT
ACACTCCAAGAGGCGAGGGAAGCATGCGGTGGACAGGGATACAAATCGGA
GAATCGCATCGGACCTATTAAGAACGGTCACGATGTGGCTGTTACTTATG
AGGGAGACAATCACATTCTGCTACAAGCTGTCACCAAGACTGTGCTGCCT
GAATTCGTTCTGGGCGTGAAGGAAGGTGCGGTATTCAAGGGGCATTTCTC
GTACTTGAACGATCGCCACAAGTTGCGTGACGCAGATCTGAGCGCTATGG
ACGTGAGCAGCGCAGAGTTTGCGAGGATTGTGTTCCGTAGAAGGGAGGCG
GCAGTATTTGCAAGATTGGCAAATCGGTTGCAAGTGATGCAGAAGGGCGG
AATGACTGCTTTGGAGGCATTCAACAGTTGCGGTGTGTTGGTTGAGGAGG
CAGCTCGGGCGCATACGGAATTGGTGATCATTGATTTGTTTGATAAGAGA
ATGAAAGAACTTGAAGAACAAGGTGAGGTGGACTTGATGAAGGCATTACG
TACATGTGGTTCGATCTACGTGCTGAAACGCATTGACGATGATAGCGGAT
TTGTGAGAAATGGAGCGCTGAGTGGCATTGATGGCTTCCGTGCACATGAA
CGACTACTGCAAATGTGCAAGGAGATGCGACCACATGTGATGGACTATGT
GAATGGATTTGGCATTCCGGCTCATTTACTGGCGCCGATTGCTTTCGACT
ACGTTGCGCACAACAGTCGTGCCAGACTGTGA
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