Ggra7986.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7986.t1
Unique NameGgra7986.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length222
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:587881..588615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7986Ggra7986Gracilaria gracilis GNS1m malegenetig00000073_pilon 587881..588615 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7986.t1Ggra7986.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 587881..588615 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7986.t1.start1Ggra7986.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 587881..587883 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7986.t1.CDS1Ggra7986.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 587881..588100 +
Ggra7986.t1.CDS2Ggra7986.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000073_pilon 588170..588615 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7986.t1.exon1Ggra7986.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 587881..588100 +
Ggra7986.t1.exon2Ggra7986.t1.exon2Gracilaria gracilis GNS1m maleexontig00000073_pilon 588170..588615 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7986.t1.intron1Ggra7986.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000073_pilon 588101..588169 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7986.t1.stop1Ggra7986.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 588613..588615 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7986.t1 ID=Ggra7986.t1|Name=Ggra7986.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=222bp
MNIGLQFAGFITPAPTRLTNACSRSRQCGRSIVRCSVKAKTSSSRRRQRL
TVEAPNLNSYSHDLLDELRRLIRSPSFISRVRERIQWPYFRFTGVLFGRV
PVTQNDDGSGGDGVPDTLRHLANRVDMKFIDVPPLLVQRAATNTNQAMQI
RLPRIVAVFETYGHPKKALLDLQNQRYEFEIDLQKQRVAWSDQGDTRRNE
TKIMSLHGAELFDDDYLGYYL*
back to top

spliced messenger RNA

>Ggra7986.t1 ID=Ggra7986.t1|Name=Ggra7986.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=666bp|location=Sequence derived from alignment at tig00000073_pilon:587881..588615+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACATAGGTCTTCAGTTCGCGGGATTCATAACCCCTGCGCCGACCAG
GCTTACGAACGCGTGTTCTCGTTCCAGGCAATGCGGGCGCAGCATAGTGC
GGTGCAGCGTCAAGGCGAAGACTAGTTCTTCTCGCCGTCGCCAGAGGTTG
ACGGTTGAAGCGCCAAACTTGAACAGCTACTCTCACGACCTTCTGGACGA
ACTGCGTCGTCTAATTCGATCCCCTTCTTTTATTTCACGAGTACGAGAGC
GTATTCAATGGCCGTACTTTCGATTCACCGGAGTCCTATTCGGTCGCGTC
CCGGTAACTCAAAATGACGATGGCAGTGGTGGCGATGGTGTGCCCGACAC
GCTTCGCCACCTAGCAAATCGCGTTGATATGAAGTTTATTGATGTCCCTC
CTCTTCTCGTGCAACGCGCCGCGACAAACACTAATCAAGCGATGCAGATT
CGACTTCCGCGGATCGTCGCAGTGTTTGAAACGTACGGCCACCCGAAGAA
GGCTCTGCTTGACCTGCAAAATCAACGCTATGAATTTGAAATCGATCTGC
AAAAACAGCGTGTGGCGTGGTCAGATCAAGGGGACACCCGTCGCAACGAG
ACCAAAATCATGTCTTTACATGGCGCAGAGTTGTTTGATGACGACTACCT
TGGCTACTATCTTTGA
back to top

protein sequence of Ggra7986.t1

>Ggra7986.t1 ID=Ggra7986.t1|Name=Ggra7986.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=222bp
MNIGLQFAGFITPAPTRLTNACSRSRQCGRSIVRCSVKAKTSSSRRRQRL
TVEAPNLNSYSHDLLDELRRLIRSPSFISRVRERIQWPYFRFTGVLFGRV
PVTQNDDGSGGDGVPDTLRHLANRVDMKFIDVPPLLVQRAATNTNQAMQI
RLPRIVAVFETYGHPKKALLDLQNQRYEFEIDLQKQRVAWSDQGDTRRNE
TKIMSLHGAELFDDDYLGYYL*
back to top

mRNA from alignment at tig00000073_pilon:587881..588615+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7986.t1 ID=Ggra7986.t1|Name=Ggra7986.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=735bp|location=Sequence derived from alignment at tig00000073_pilon:587881..588615+ (Gracilaria gracilis GNS1m male)
ATGAACATAGGTCTTCAGTTCGCGGGATTCATAACCCCTGCGCCGACCAG
GCTTACGAACGCGTGTTCTCGTTCCAGGCAATGCGGGCGCAGCATAGTGC
GGTGCAGCGTCAAGGCGAAGACTAGTTCTTCTCGCCGTCGCCAGAGGTTG
ACGGTTGAAGCGCCAAACTTGAACAGCTACTCTCACGACCTTCTGGACGA
ACTGCGTCGTCTAATTCGATGTAAGTTGGCTTCCAGATCAGTTCATAGCA
GATTCGCTCTCTTAACAATACCTTCTAACGAACTGTTAGCCCCTTCTTTT
ATTTCACGAGTACGAGAGCGTATTCAATGGCCGTACTTTCGATTCACCGG
AGTCCTATTCGGTCGCGTCCCGGTAACTCAAAATGACGATGGCAGTGGTG
GCGATGGTGTGCCCGACACGCTTCGCCACCTAGCAAATCGCGTTGATATG
AAGTTTATTGATGTCCCTCCTCTTCTCGTGCAACGCGCCGCGACAAACAC
TAATCAAGCGATGCAGATTCGACTTCCGCGGATCGTCGCAGTGTTTGAAA
CGTACGGCCACCCGAAGAAGGCTCTGCTTGACCTGCAAAATCAACGCTAT
GAATTTGAAATCGATCTGCAAAAACAGCGTGTGGCGTGGTCAGATCAAGG
GGACACCCGTCGCAACGAGACCAAAATCATGTCTTTACATGGCGCAGAGT
TGTTTGATGACGACTACCTTGGCTACTATCTTTGA
back to top

Coding sequence (CDS) from alignment at tig00000073_pilon:587881..588615+

>Ggra7986.t1 ID=Ggra7986.t1|Name=Ggra7986.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=666bp|location=Sequence derived from alignment at tig00000073_pilon:587881..588615+ (Gracilaria gracilis GNS1m male)
ATGAACATAGGTCTTCAGTTCGCGGGATTCATAACCCCTGCGCCGACCAG
GCTTACGAACGCGTGTTCTCGTTCCAGGCAATGCGGGCGCAGCATAGTGC
GGTGCAGCGTCAAGGCGAAGACTAGTTCTTCTCGCCGTCGCCAGAGGTTG
ACGGTTGAAGCGCCAAACTTGAACAGCTACTCTCACGACCTTCTGGACGA
ACTGCGTCGTCTAATTCGATCCCCTTCTTTTATTTCACGAGTACGAGAGC
GTATTCAATGGCCGTACTTTCGATTCACCGGAGTCCTATTCGGTCGCGTC
CCGGTAACTCAAAATGACGATGGCAGTGGTGGCGATGGTGTGCCCGACAC
GCTTCGCCACCTAGCAAATCGCGTTGATATGAAGTTTATTGATGTCCCTC
CTCTTCTCGTGCAACGCGCCGCGACAAACACTAATCAAGCGATGCAGATT
CGACTTCCGCGGATCGTCGCAGTGTTTGAAACGTACGGCCACCCGAAGAA
GGCTCTGCTTGACCTGCAAAATCAACGCTATGAATTTGAAATCGATCTGC
AAAAACAGCGTGTGGCGTGGTCAGATCAAGGGGACACCCGTCGCAACGAG
ACCAAAATCATGTCTTTACATGGCGCAGAGTTGTTTGATGACGACTACCT
TGGCTACTATCTTTGA
back to top