Ggra7975.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7975.t1
Unique Name	Ggra7975.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	679

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000073_pilon	contig	tig00000073_pilon:550393..552429 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707961.1
PFAMs	ABC_membrane_2,ABC_tran,PWWP
Max annot lvl	2759\|Eukaryota
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue	4.1e-173
EggNOG OGs	COG4178@1\|root,KOG0060@2759\|Eukaryota
Description	ATP-binding cassette sub-family D
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7975	Ggra7975	Gracilaria gracilis GNS1m male	gene	tig00000073_pilon 550393..552429 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7975.t1.start1	Ggra7975.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000073_pilon 550393..550395 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7975.t1.CDS1	Ggra7975.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000073_pilon 550393..552429 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7975.t1.exon1	Ggra7975.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000073_pilon 550393..552429 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7975.t1.stop1	Ggra7975.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000073_pilon 552427..552429 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7975.t1	Ggra7975.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000073_pilon 550393..552429 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000073_pilon:550393..552429+
coding sequence from alignment at tig00000073_pilon:550393..552429+

mRNA sequence

>Ggra7975.t1 ID=Ggra7975.t1|Name=Ggra7975.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=679bp
MASTPVTFVSTFIPSLHSYRSFCNTKARQRCVPRRAVLKPTRRIAPVSLN
QNPPPSSNGVDKEHQNPSPSSNGVDKEIPSKETEAERKRREVGRLLSLFS
RLALPYWQAEKQARRDLAGVVALTFLQSGVSVLFSYVSRDFWTALNTKDI
ELFYHQAEIFFVTMVAFTPVVVYYQYFRDRCALRWRDWITDRVLRQYCSN
RNFYTLEAVDNPDQRIAQDLNSFTTESIAFVLTLLVSAIDLVSFSAILFS
IYPYLFVVLLIYATTGTYLTAVLGKRLIGLNYNQIVREADLRYGLIRMRE
NAESIAFFNGEQREEVEIQRRLKSAIKNMGEVINLRKQVGFLQTGYRYAV
RILPAVCVAPRYFSGAIELGSVTQSFSAFSHILDDLSLVVNRFDSLSQFG
AGIDRLAQFVQALEDNIADEQKTFGTHSERSPTLGRGHRGGISLTKIPGR
SRGLSVQNLTLFTPDDEMPRKLIEDLSFTLSPGERLLVCGPSGNGKSSLL
RAIAGLWTNGSGSVTCPDDNGVFFLPQKPYCTLGSLRDNLVYPKDAETTD
ITDGALLRALDLVHLAKLPARMGGLDAVMDWGEVLSLGEQQRLQFARLFL
SGTGVAIIDEGTSALSVQIEKLMYDLVTGMGATVISVGHRPTLLSYHDRI
LRLRVGLWELDDITQRERDQVVTQPLCS*

spliced messenger RNA

>Ggra7975.t1 ID=Ggra7975.t1|Name=Ggra7975.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2037bp|location=Sequence derived from alignment at tig00000073_pilon:550393..552429+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATCAACACCCGTCACTTTCGTTTCCACTTTCATTCCCTCTTTGCA
CTCGTACCGGAGCTTCTGCAACACGAAGGCACGGCAACGATGTGTTCCAC
GGAGAGCGGTACTGAAGCCCACAAGAAGAATAGCGCCAGTATCGCTTAAC
CAGAACCCACCGCCCTCTTCCAATGGTGTTGACAAGGAACACCAGAACCC
ATCGCCTTCTTCAAATGGTGTTGACAAGGAAATACCATCCAAAGAAACCG
AAGCAGAACGCAAGCGGAGAGAAGTGGGCCGTCTGCTCTCCCTTTTCTCT
CGCCTGGCGCTGCCATATTGGCAAGCAGAAAAGCAAGCGAGAAGAGATTT
GGCTGGGGTAGTGGCCCTAACATTTCTGCAGTCCGGTGTTTCAGTTCTGT
TTTCTTACGTTTCACGCGATTTCTGGACAGCTCTGAACACCAAAGATATA
GAACTCTTCTATCACCAAGCCGAAATTTTCTTTGTCACAATGGTTGCGTT
CACTCCGGTCGTAGTGTACTACCAATACTTTCGAGATAGGTGTGCACTGC
GTTGGCGAGACTGGATCACTGATAGAGTTCTGAGACAATACTGTTCTAAC
CGCAACTTCTATACTCTAGAGGCCGTAGACAATCCAGATCAGCGTATTGC
GCAGGACCTCAACTCATTTACAACTGAATCAATAGCCTTTGTTTTGACTT
TGCTTGTATCTGCAATTGACCTGGTTTCATTTTCCGCCATCTTATTCTCC
ATTTACCCATATCTATTTGTCGTCCTTCTCATATATGCCACCACTGGCAC
GTATCTAACGGCGGTACTTGGAAAGAGACTCATCGGACTCAACTACAATC
AAATTGTACGAGAAGCTGACCTGCGCTATGGTTTGATTCGAATGCGAGAG
AATGCGGAGAGTATTGCCTTCTTCAACGGTGAGCAAAGAGAAGAAGTGGA
GATCCAACGCCGTTTGAAATCTGCAATTAAGAATATGGGAGAGGTTATAA
ACCTTCGAAAGCAAGTCGGTTTCCTGCAGACGGGATACCGATACGCAGTT
CGCATACTCCCGGCCGTCTGCGTCGCTCCAAGATATTTCTCAGGAGCCAT
AGAGCTAGGAAGCGTGACGCAAAGCTTCAGCGCATTCTCACACATTCTTG
ATGACCTTAGCCTGGTTGTCAATCGATTTGATAGTTTGAGTCAGTTTGGA
GCAGGCATTGATCGACTTGCACAATTTGTGCAGGCGCTTGAAGACAACAT
TGCGGACGAGCAGAAGACGTTTGGCACCCATTCTGAAAGGAGCCCCACAC
TAGGACGTGGGCACCGTGGGGGCATCTCACTCACCAAGATACCAGGGAGG
TCAAGAGGGCTGTCAGTTCAAAACCTCACGTTATTCACTCCTGATGATGA
GATGCCGAGAAAACTGATAGAGGACTTGTCGTTCACTCTGTCACCGGGCG
AGCGTTTGCTAGTGTGTGGGCCTTCTGGAAACGGGAAATCTTCTCTGTTA
AGGGCTATCGCAGGGTTGTGGACCAATGGATCTGGATCTGTTACATGTCC
CGACGACAATGGTGTCTTCTTTCTTCCACAGAAACCGTACTGCACTCTTG
GGTCCCTACGTGACAACCTCGTTTATCCCAAAGACGCAGAAACCACAGAT
ATAACTGACGGTGCCCTACTTCGCGCTTTAGATCTTGTTCACTTAGCTAA
GTTACCAGCGAGAATGGGAGGGCTTGATGCTGTCATGGATTGGGGAGAGG
TGTTGAGTCTAGGCGAGCAGCAAAGACTGCAGTTCGCACGCCTATTCCTA
TCAGGGACTGGAGTAGCCATTATTGACGAGGGTACAAGTGCCTTAAGCGT
ACAAATTGAAAAACTAATGTATGACTTGGTGACAGGGATGGGGGCTACGG
TGATTAGCGTTGGTCATCGTCCCACTCTGTTGAGCTATCACGATAGAATT
CTGAGATTGCGTGTTGGTTTGTGGGAGCTTGACGATATCACACAGAGAGA
ACGTGATCAAGTCGTAACACAACCTTTGTGTTCGTAA

protein sequence of Ggra7975.t1

>Ggra7975.t1 ID=Ggra7975.t1|Name=Ggra7975.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=679bp
MASTPVTFVSTFIPSLHSYRSFCNTKARQRCVPRRAVLKPTRRIAPVSLN
QNPPPSSNGVDKEHQNPSPSSNGVDKEIPSKETEAERKRREVGRLLSLFS
RLALPYWQAEKQARRDLAGVVALTFLQSGVSVLFSYVSRDFWTALNTKDI
ELFYHQAEIFFVTMVAFTPVVVYYQYFRDRCALRWRDWITDRVLRQYCSN
RNFYTLEAVDNPDQRIAQDLNSFTTESIAFVLTLLVSAIDLVSFSAILFS
IYPYLFVVLLIYATTGTYLTAVLGKRLIGLNYNQIVREADLRYGLIRMRE
NAESIAFFNGEQREEVEIQRRLKSAIKNMGEVINLRKQVGFLQTGYRYAV
RILPAVCVAPRYFSGAIELGSVTQSFSAFSHILDDLSLVVNRFDSLSQFG
AGIDRLAQFVQALEDNIADEQKTFGTHSERSPTLGRGHRGGISLTKIPGR
SRGLSVQNLTLFTPDDEMPRKLIEDLSFTLSPGERLLVCGPSGNGKSSLL
RAIAGLWTNGSGSVTCPDDNGVFFLPQKPYCTLGSLRDNLVYPKDAETTD
ITDGALLRALDLVHLAKLPARMGGLDAVMDWGEVLSLGEQQRLQFARLFL
SGTGVAIIDEGTSALSVQIEKLMYDLVTGMGATVISVGHRPTLLSYHDRI
LRLRVGLWELDDITQRERDQVVTQPLCS*

mRNA from alignment at tig00000073_pilon:550393..552429+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7975.t1 ID=Ggra7975.t1|Name=Ggra7975.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2037bp|location=Sequence derived from alignment at tig00000073_pilon:550393..552429+ (Gracilaria gracilis GNS1m male)
ATGGCATCAACACCCGTCACTTTCGTTTCCACTTTCATTCCCTCTTTGCA
CTCGTACCGGAGCTTCTGCAACACGAAGGCACGGCAACGATGTGTTCCAC
GGAGAGCGGTACTGAAGCCCACAAGAAGAATAGCGCCAGTATCGCTTAAC
CAGAACCCACCGCCCTCTTCCAATGGTGTTGACAAGGAACACCAGAACCC
ATCGCCTTCTTCAAATGGTGTTGACAAGGAAATACCATCCAAAGAAACCG
AAGCAGAACGCAAGCGGAGAGAAGTGGGCCGTCTGCTCTCCCTTTTCTCT
CGCCTGGCGCTGCCATATTGGCAAGCAGAAAAGCAAGCGAGAAGAGATTT
GGCTGGGGTAGTGGCCCTAACATTTCTGCAGTCCGGTGTTTCAGTTCTGT
TTTCTTACGTTTCACGCGATTTCTGGACAGCTCTGAACACCAAAGATATA
GAACTCTTCTATCACCAAGCCGAAATTTTCTTTGTCACAATGGTTGCGTT
CACTCCGGTCGTAGTGTACTACCAATACTTTCGAGATAGGTGTGCACTGC
GTTGGCGAGACTGGATCACTGATAGAGTTCTGAGACAATACTGTTCTAAC
CGCAACTTCTATACTCTAGAGGCCGTAGACAATCCAGATCAGCGTATTGC
GCAGGACCTCAACTCATTTACAACTGAATCAATAGCCTTTGTTTTGACTT
TGCTTGTATCTGCAATTGACCTGGTTTCATTTTCCGCCATCTTATTCTCC
ATTTACCCATATCTATTTGTCGTCCTTCTCATATATGCCACCACTGGCAC
GTATCTAACGGCGGTACTTGGAAAGAGACTCATCGGACTCAACTACAATC
AAATTGTACGAGAAGCTGACCTGCGCTATGGTTTGATTCGAATGCGAGAG
AATGCGGAGAGTATTGCCTTCTTCAACGGTGAGCAAAGAGAAGAAGTGGA
GATCCAACGCCGTTTGAAATCTGCAATTAAGAATATGGGAGAGGTTATAA
ACCTTCGAAAGCAAGTCGGTTTCCTGCAGACGGGATACCGATACGCAGTT
CGCATACTCCCGGCCGTCTGCGTCGCTCCAAGATATTTCTCAGGAGCCAT
AGAGCTAGGAAGCGTGACGCAAAGCTTCAGCGCATTCTCACACATTCTTG
ATGACCTTAGCCTGGTTGTCAATCGATTTGATAGTTTGAGTCAGTTTGGA
GCAGGCATTGATCGACTTGCACAATTTGTGCAGGCGCTTGAAGACAACAT
TGCGGACGAGCAGAAGACGTTTGGCACCCATTCTGAAAGGAGCCCCACAC
TAGGACGTGGGCACCGTGGGGGCATCTCACTCACCAAGATACCAGGGAGG
TCAAGAGGGCTGTCAGTTCAAAACCTCACGTTATTCACTCCTGATGATGA
GATGCCGAGAAAACTGATAGAGGACTTGTCGTTCACTCTGTCACCGGGCG
AGCGTTTGCTAGTGTGTGGGCCTTCTGGAAACGGGAAATCTTCTCTGTTA
AGGGCTATCGCAGGGTTGTGGACCAATGGATCTGGATCTGTTACATGTCC
CGACGACAATGGTGTCTTCTTTCTTCCACAGAAACCGTACTGCACTCTTG
GGTCCCTACGTGACAACCTCGTTTATCCCAAAGACGCAGAAACCACAGAT
ATAACTGACGGTGCCCTACTTCGCGCTTTAGATCTTGTTCACTTAGCTAA
GTTACCAGCGAGAATGGGAGGGCTTGATGCTGTCATGGATTGGGGAGAGG
TGTTGAGTCTAGGCGAGCAGCAAAGACTGCAGTTCGCACGCCTATTCCTA
TCAGGGACTGGAGTAGCCATTATTGACGAGGGTACAAGTGCCTTAAGCGT
ACAAATTGAAAAACTAATGTATGACTTGGTGACAGGGATGGGGGCTACGG
TGATTAGCGTTGGTCATCGTCCCACTCTGTTGAGCTATCACGATAGAATT
CTGAGATTGCGTGTTGGTTTGTGGGAGCTTGACGATATCACACAGAGAGA
ACGTGATCAAGTCGTAACACAACCTTTGTGTTCGTAA

Coding sequence (CDS) from alignment at tig00000073_pilon:550393..552429+

>Ggra7975.t1 ID=Ggra7975.t1|Name=Ggra7975.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2037bp|location=Sequence derived from alignment at tig00000073_pilon:550393..552429+ (Gracilaria gracilis GNS1m male)
ATGGCATCAACACCCGTCACTTTCGTTTCCACTTTCATTCCCTCTTTGCA
CTCGTACCGGAGCTTCTGCAACACGAAGGCACGGCAACGATGTGTTCCAC
GGAGAGCGGTACTGAAGCCCACAAGAAGAATAGCGCCAGTATCGCTTAAC
CAGAACCCACCGCCCTCTTCCAATGGTGTTGACAAGGAACACCAGAACCC
ATCGCCTTCTTCAAATGGTGTTGACAAGGAAATACCATCCAAAGAAACCG
AAGCAGAACGCAAGCGGAGAGAAGTGGGCCGTCTGCTCTCCCTTTTCTCT
CGCCTGGCGCTGCCATATTGGCAAGCAGAAAAGCAAGCGAGAAGAGATTT
GGCTGGGGTAGTGGCCCTAACATTTCTGCAGTCCGGTGTTTCAGTTCTGT
TTTCTTACGTTTCACGCGATTTCTGGACAGCTCTGAACACCAAAGATATA
GAACTCTTCTATCACCAAGCCGAAATTTTCTTTGTCACAATGGTTGCGTT
CACTCCGGTCGTAGTGTACTACCAATACTTTCGAGATAGGTGTGCACTGC
GTTGGCGAGACTGGATCACTGATAGAGTTCTGAGACAATACTGTTCTAAC
CGCAACTTCTATACTCTAGAGGCCGTAGACAATCCAGATCAGCGTATTGC
GCAGGACCTCAACTCATTTACAACTGAATCAATAGCCTTTGTTTTGACTT
TGCTTGTATCTGCAATTGACCTGGTTTCATTTTCCGCCATCTTATTCTCC
ATTTACCCATATCTATTTGTCGTCCTTCTCATATATGCCACCACTGGCAC
GTATCTAACGGCGGTACTTGGAAAGAGACTCATCGGACTCAACTACAATC
AAATTGTACGAGAAGCTGACCTGCGCTATGGTTTGATTCGAATGCGAGAG
AATGCGGAGAGTATTGCCTTCTTCAACGGTGAGCAAAGAGAAGAAGTGGA
GATCCAACGCCGTTTGAAATCTGCAATTAAGAATATGGGAGAGGTTATAA
ACCTTCGAAAGCAAGTCGGTTTCCTGCAGACGGGATACCGATACGCAGTT
CGCATACTCCCGGCCGTCTGCGTCGCTCCAAGATATTTCTCAGGAGCCAT
AGAGCTAGGAAGCGTGACGCAAAGCTTCAGCGCATTCTCACACATTCTTG
ATGACCTTAGCCTGGTTGTCAATCGATTTGATAGTTTGAGTCAGTTTGGA
GCAGGCATTGATCGACTTGCACAATTTGTGCAGGCGCTTGAAGACAACAT
TGCGGACGAGCAGAAGACGTTTGGCACCCATTCTGAAAGGAGCCCCACAC
TAGGACGTGGGCACCGTGGGGGCATCTCACTCACCAAGATACCAGGGAGG
TCAAGAGGGCTGTCAGTTCAAAACCTCACGTTATTCACTCCTGATGATGA
GATGCCGAGAAAACTGATAGAGGACTTGTCGTTCACTCTGTCACCGGGCG
AGCGTTTGCTAGTGTGTGGGCCTTCTGGAAACGGGAAATCTTCTCTGTTA
AGGGCTATCGCAGGGTTGTGGACCAATGGATCTGGATCTGTTACATGTCC
CGACGACAATGGTGTCTTCTTTCTTCCACAGAAACCGTACTGCACTCTTG
GGTCCCTACGTGACAACCTCGTTTATCCCAAAGACGCAGAAACCACAGAT
ATAACTGACGGTGCCCTACTTCGCGCTTTAGATCTTGTTCACTTAGCTAA
GTTACCAGCGAGAATGGGAGGGCTTGATGCTGTCATGGATTGGGGAGAGG
TGTTGAGTCTAGGCGAGCAGCAAAGACTGCAGTTCGCACGCCTATTCCTA
TCAGGGACTGGAGTAGCCATTATTGACGAGGGTACAAGTGCCTTAAGCGT
ACAAATTGAAAAACTAATGTATGACTTGGTGACAGGGATGGGGGCTACGG
TGATTAGCGTTGGTCATCGTCCCACTCTGTTGAGCTATCACGATAGAATT
CTGAGATTGCGTGTTGGTTTGTGGGAGCTTGACGATATCACACAGAGAGA
ACGTGATCAAGTCGTAACACAACCTTTGTGTTCGTAA