Ggra7962.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7962.t1
Unique NameGgra7962.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length309
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:526039..526965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog227086.JGI_V11_47521
Preferred nameRPF1
PFAMsBrix
Max annot lvl2759|Eukaryota
KEGG koko:K14846
GOsGO:0000027,GO:0000054,GO:0000055,GO:0000460,GO:0000463,GO:0000466,GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016072,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0030684,GO:0030687,GO:0031503,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033750,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034660,GO:0042134,GO:0042254,GO:0042255,GO:0042273,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0065003,GO:0070013,GO:0070727,GO:0070925,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Evalue1.92e-69
EggNOG OGsCOG2136@1|root,KOG2780@2759|Eukaryota
DescriptionrRNA primary transcript binding
COG categoryAJ
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7962Ggra7962Gracilaria gracilis GNS1m malegenetig00000073_pilon 526039..526965 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7962.t1.start1Ggra7962.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 526039..526041 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7962.t1.CDS1Ggra7962.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 526039..526965 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7962.t1.exon1Ggra7962.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 526039..526965 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7962.t1.stop1Ggra7962.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 526963..526965 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7962.t1Ggra7962.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 526039..526965 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7962.t1 ID=Ggra7962.t1|Name=Ggra7962.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=309bp
MKEEAPNDSLSLRVASSKNSIVKSAFRTRHRRQQKREKAERRRKRQRQER
QNPDKAPEKEEPRTIESSRVYDEQTGHPLTKEQALAITDEFTPVLAGEKH
PKIVVTTGLKATDVSFDFVRQVLPALFGATYFERLDSSISDFCTKAVEKG
FTDVVLIKEDKKALSTLTHVHLPSGPTAIYKISSFVPTQKIPGHGRCTAH
KPEVILNNFNTALGLRVARMLASLFSHTPNFVGRQAATFHNQRDFIFFRF
HRYVFSSARDKARLQELGPRFTLKLRALQKGVFQHPDVADHEFRWTTKTD
INRRRFFL*
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spliced messenger RNA

>Ggra7962.t1 ID=Ggra7962.t1|Name=Ggra7962.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=927bp|location=Sequence derived from alignment at tig00000073_pilon:526039..526965+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGAGGAAGCACCAAACGACAGCCTTTCACTACGGGTAGCATCTTC
AAAGAACAGCATTGTAAAATCGGCGTTTCGAACTCGACATCGTCGTCAGC
AAAAGCGCGAAAAGGCCGAACGCCGCCGAAAGCGTCAACGACAAGAGCGA
CAAAATCCCGATAAAGCACCAGAGAAAGAGGAACCTCGGACAATAGAATC
CTCTAGAGTATATGACGAACAAACTGGACACCCTCTCACAAAAGAACAGG
CACTCGCCATAACTGATGAATTCACCCCAGTACTGGCTGGTGAGAAACAT
CCAAAGATCGTCGTTACGACTGGACTGAAAGCAACCGACGTTTCATTCGA
CTTCGTAAGACAGGTACTTCCTGCTCTGTTTGGTGCCACTTATTTTGAAC
GGTTGGATTCATCCATTTCTGATTTCTGTACAAAGGCTGTCGAAAAGGGA
TTCACAGATGTTGTGCTCATCAAAGAAGACAAGAAAGCATTATCGACACT
AACGCACGTTCACCTCCCGTCCGGTCCCACAGCTATCTACAAAATATCTT
CGTTTGTCCCGACACAAAAGATCCCCGGACACGGTCGTTGCACGGCACAT
AAGCCGGAGGTCATTCTCAACAACTTCAACACGGCCTTAGGACTGCGCGT
CGCGAGAATGCTGGCCTCACTGTTTTCGCATACTCCCAATTTTGTCGGGC
GGCAAGCAGCCACTTTTCACAACCAACGCGACTTCATCTTCTTCCGCTTT
CATCGATATGTATTTAGTTCTGCGAGAGACAAAGCTCGCTTGCAGGAGCT
TGGCCCACGCTTTACACTTAAATTACGAGCATTGCAAAAAGGCGTGTTTC
AACACCCGGATGTAGCAGACCACGAGTTTCGTTGGACGACAAAAACAGAT
ATCAATCGGAGAAGGTTCTTTCTATGA
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protein sequence of Ggra7962.t1

>Ggra7962.t1 ID=Ggra7962.t1|Name=Ggra7962.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=309bp
MKEEAPNDSLSLRVASSKNSIVKSAFRTRHRRQQKREKAERRRKRQRQER
QNPDKAPEKEEPRTIESSRVYDEQTGHPLTKEQALAITDEFTPVLAGEKH
PKIVVTTGLKATDVSFDFVRQVLPALFGATYFERLDSSISDFCTKAVEKG
FTDVVLIKEDKKALSTLTHVHLPSGPTAIYKISSFVPTQKIPGHGRCTAH
KPEVILNNFNTALGLRVARMLASLFSHTPNFVGRQAATFHNQRDFIFFRF
HRYVFSSARDKARLQELGPRFTLKLRALQKGVFQHPDVADHEFRWTTKTD
INRRRFFL*
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mRNA from alignment at tig00000073_pilon:526039..526965+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7962.t1 ID=Ggra7962.t1|Name=Ggra7962.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=927bp|location=Sequence derived from alignment at tig00000073_pilon:526039..526965+ (Gracilaria gracilis GNS1m male)
ATGAAGGAGGAAGCACCAAACGACAGCCTTTCACTACGGGTAGCATCTTC
AAAGAACAGCATTGTAAAATCGGCGTTTCGAACTCGACATCGTCGTCAGC
AAAAGCGCGAAAAGGCCGAACGCCGCCGAAAGCGTCAACGACAAGAGCGA
CAAAATCCCGATAAAGCACCAGAGAAAGAGGAACCTCGGACAATAGAATC
CTCTAGAGTATATGACGAACAAACTGGACACCCTCTCACAAAAGAACAGG
CACTCGCCATAACTGATGAATTCACCCCAGTACTGGCTGGTGAGAAACAT
CCAAAGATCGTCGTTACGACTGGACTGAAAGCAACCGACGTTTCATTCGA
CTTCGTAAGACAGGTACTTCCTGCTCTGTTTGGTGCCACTTATTTTGAAC
GGTTGGATTCATCCATTTCTGATTTCTGTACAAAGGCTGTCGAAAAGGGA
TTCACAGATGTTGTGCTCATCAAAGAAGACAAGAAAGCATTATCGACACT
AACGCACGTTCACCTCCCGTCCGGTCCCACAGCTATCTACAAAATATCTT
CGTTTGTCCCGACACAAAAGATCCCCGGACACGGTCGTTGCACGGCACAT
AAGCCGGAGGTCATTCTCAACAACTTCAACACGGCCTTAGGACTGCGCGT
CGCGAGAATGCTGGCCTCACTGTTTTCGCATACTCCCAATTTTGTCGGGC
GGCAAGCAGCCACTTTTCACAACCAACGCGACTTCATCTTCTTCCGCTTT
CATCGATATGTATTTAGTTCTGCGAGAGACAAAGCTCGCTTGCAGGAGCT
TGGCCCACGCTTTACACTTAAATTACGAGCATTGCAAAAAGGCGTGTTTC
AACACCCGGATGTAGCAGACCACGAGTTTCGTTGGACGACAAAAACAGAT
ATCAATCGGAGAAGGTTCTTTCTATGA
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Coding sequence (CDS) from alignment at tig00000073_pilon:526039..526965+

>Ggra7962.t1 ID=Ggra7962.t1|Name=Ggra7962.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=927bp|location=Sequence derived from alignment at tig00000073_pilon:526039..526965+ (Gracilaria gracilis GNS1m male)
ATGAAGGAGGAAGCACCAAACGACAGCCTTTCACTACGGGTAGCATCTTC
AAAGAACAGCATTGTAAAATCGGCGTTTCGAACTCGACATCGTCGTCAGC
AAAAGCGCGAAAAGGCCGAACGCCGCCGAAAGCGTCAACGACAAGAGCGA
CAAAATCCCGATAAAGCACCAGAGAAAGAGGAACCTCGGACAATAGAATC
CTCTAGAGTATATGACGAACAAACTGGACACCCTCTCACAAAAGAACAGG
CACTCGCCATAACTGATGAATTCACCCCAGTACTGGCTGGTGAGAAACAT
CCAAAGATCGTCGTTACGACTGGACTGAAAGCAACCGACGTTTCATTCGA
CTTCGTAAGACAGGTACTTCCTGCTCTGTTTGGTGCCACTTATTTTGAAC
GGTTGGATTCATCCATTTCTGATTTCTGTACAAAGGCTGTCGAAAAGGGA
TTCACAGATGTTGTGCTCATCAAAGAAGACAAGAAAGCATTATCGACACT
AACGCACGTTCACCTCCCGTCCGGTCCCACAGCTATCTACAAAATATCTT
CGTTTGTCCCGACACAAAAGATCCCCGGACACGGTCGTTGCACGGCACAT
AAGCCGGAGGTCATTCTCAACAACTTCAACACGGCCTTAGGACTGCGCGT
CGCGAGAATGCTGGCCTCACTGTTTTCGCATACTCCCAATTTTGTCGGGC
GGCAAGCAGCCACTTTTCACAACCAACGCGACTTCATCTTCTTCCGCTTT
CATCGATATGTATTTAGTTCTGCGAGAGACAAAGCTCGCTTGCAGGAGCT
TGGCCCACGCTTTACACTTAAATTACGAGCATTGCAAAAAGGCGTGTTTC
AACACCCGGATGTAGCAGACCACGAGTTTCGTTGGACGACAAAAACAGAT
ATCAATCGGAGAAGGTTCTTTCTATGA
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