Ggra7954.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7954.t2
Unique NameGgra7954.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length404
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:509403..510614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD26982
Preferred nameGGPS1
PFAMspolyprenyl_synt
Max annot lvl2759|Eukaryota
KEGG rclassRC00279
KEGG koko:K13789
KEGG ReactionR01658,R02003,R02061
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00364,M00366
Evalue1.04e-119
EggNOG OGsCOG0142@1|root,KOG0776@2759|Eukaryota
EC2.5.1.1,2.5.1.10,2.5.1.29
Descriptionisoprenoid biosynthetic process
COG categoryH
BiGG ReactioniRC1080.CRv4_Au5_s12_g2763_t1
BRITEko00000,ko00001,ko00002,ko01000,ko01006
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7954Ggra7954Gracilaria gracilis GNS1m malegenetig00000073_pilon 509403..510614 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7954.t2.stop1Ggra7954.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 509403..509405 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7954.t2.CDS1Ggra7954.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 509403..510614 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7954.t2.exon1Ggra7954.t2.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 509403..510614 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7954.t2.start1Ggra7954.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 510612..510614 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7954.t2Ggra7954.t2Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 509403..510614 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7954.t2 ID=Ggra7954.t2|Name=Ggra7954.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=404bp
MRRRFARLRLSRYHNGGAPCARLPRVATRPASRPLLEMLLPSFAHCVPLR
APRRVARKPRASRAPVAPLAVARRRVTPPPQHAASSSSSSSSSSPPPPPT
PALSAAALREYLVLNKRRVDEQLEACLQLTDGRTETLVSAMRYSLLAGGK
RIRPILAIAAFQMFAGERAQLAPVMPAALAVEMIHTMSLIHDDLPSMDND
DFRRGKPTNHKVYGEDIAILAGDALLSYAFEYVARNTRSVDPARVVEVLA
LLTNSVGPQGLAGGQVMDIKSEGRSDISIDTLTWIHTHKTAALLRVSVAC
GAILGGASADDVRRVSEFAVKTGLAFQIADDVLDITQSTEVLGKTAGKDL
ATDKATYPRLLGLDGSKKQAQALIQQAKESLAPYGERARTLFALADFIIS
RNN*
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spliced messenger RNA

>Ggra7954.t2 ID=Ggra7954.t2|Name=Ggra7954.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1212bp|location=Sequence derived from alignment at tig00000073_pilon:509403..510614- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGCGGCGCTTCGCGCGCTTGCGCCTCAGCCGCTATCATAACGGCGG
CGCGCCATGTGCGCGGCTGCCGCGCGTAGCGACGCGCCCCGCGTCGCGCC
CGCTGCTTGAGATGCTGCTGCCGTCGTTCGCGCACTGCGTGCCGCTGCGC
GCGCCGCGCCGCGTGGCGCGAAAGCCGCGCGCCAGCCGCGCGCCCGTTGC
GCCGCTTGCCGTTGCGCGCCGCCGCGTCACCCCGCCGCCGCAGCACGCTG
CTTCGTCGTCATCGTCATCGTCATCGTCATCGCCGCCGCCGCCGCCGACG
CCCGCGCTGTCGGCTGCCGCGCTGCGAGAGTACCTCGTGCTCAATAAGCG
CCGCGTGGACGAGCAGTTGGAGGCCTGTTTGCAGCTCACCGACGGTCGCA
CCGAGACGCTGGTCAGCGCCATGCGCTACTCGTTGCTGGCGGGCGGCAAG
CGCATTCGCCCCATCCTGGCCATTGCCGCCTTCCAGATGTTTGCCGGGGA
GCGCGCGCAGCTGGCGCCCGTCATGCCGGCCGCGCTTGCCGTCGAGATGA
TTCACACCATGAGCTTGATCCACGATGACTTGCCTAGCATGGACAACGAC
GACTTTCGTCGCGGCAAACCCACCAACCACAAGGTGTACGGCGAGGACAT
TGCCATTCTGGCGGGCGATGCCTTGCTGTCCTATGCCTTCGAGTACGTGG
CGCGCAATACCCGCTCCGTCGATCCGGCGCGCGTCGTCGAGGTGCTCGCG
CTGCTCACCAACAGTGTGGGGCCACAGGGCTTGGCCGGCGGCCAGGTCAT
GGACATCAAGTCGGAGGGGCGTTCCGACATTTCCATCGACACCCTCACCT
GGATCCATACCCACAAGACCGCCGCTCTACTGCGCGTCAGCGTCGCATGC
GGCGCCATTCTAGGCGGAGCCTCCGCGGACGACGTTCGTCGCGTCAGCGA
ATTCGCAGTCAAGACGGGGCTTGCCTTCCAGATCGCCGACGACGTGCTGG
ATATTACGCAGAGCACCGAGGTGCTTGGCAAGACTGCTGGAAAGGATCTT
GCTACCGATAAGGCTACGTATCCAAGACTGCTCGGCCTTGACGGCTCAAA
GAAGCAGGCGCAAGCACTTATTCAACAGGCGAAGGAGAGTCTTGCTCCCT
ATGGCGAACGCGCTCGAACGCTTTTCGCGCTTGCCGACTTCATCATTTCT
CGGAATAACTAG
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protein sequence of Ggra7954.t2

>Ggra7954.t2 ID=Ggra7954.t2|Name=Ggra7954.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=404bp
MRRRFARLRLSRYHNGGAPCARLPRVATRPASRPLLEMLLPSFAHCVPLR
APRRVARKPRASRAPVAPLAVARRRVTPPPQHAASSSSSSSSSSPPPPPT
PALSAAALREYLVLNKRRVDEQLEACLQLTDGRTETLVSAMRYSLLAGGK
RIRPILAIAAFQMFAGERAQLAPVMPAALAVEMIHTMSLIHDDLPSMDND
DFRRGKPTNHKVYGEDIAILAGDALLSYAFEYVARNTRSVDPARVVEVLA
LLTNSVGPQGLAGGQVMDIKSEGRSDISIDTLTWIHTHKTAALLRVSVAC
GAILGGASADDVRRVSEFAVKTGLAFQIADDVLDITQSTEVLGKTAGKDL
ATDKATYPRLLGLDGSKKQAQALIQQAKESLAPYGERARTLFALADFIIS
RNN*
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mRNA from alignment at tig00000073_pilon:509403..510614-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7954.t2 ID=Ggra7954.t2|Name=Ggra7954.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1212bp|location=Sequence derived from alignment at tig00000073_pilon:509403..510614- (Gracilaria gracilis GNS1m male)
ATGCGGCGGCGCTTCGCGCGCTTGCGCCTCAGCCGCTATCATAACGGCGG
CGCGCCATGTGCGCGGCTGCCGCGCGTAGCGACGCGCCCCGCGTCGCGCC
CGCTGCTTGAGATGCTGCTGCCGTCGTTCGCGCACTGCGTGCCGCTGCGC
GCGCCGCGCCGCGTGGCGCGAAAGCCGCGCGCCAGCCGCGCGCCCGTTGC
GCCGCTTGCCGTTGCGCGCCGCCGCGTCACCCCGCCGCCGCAGCACGCTG
CTTCGTCGTCATCGTCATCGTCATCGTCATCGCCGCCGCCGCCGCCGACG
CCCGCGCTGTCGGCTGCCGCGCTGCGAGAGTACCTCGTGCTCAATAAGCG
CCGCGTGGACGAGCAGTTGGAGGCCTGTTTGCAGCTCACCGACGGTCGCA
CCGAGACGCTGGTCAGCGCCATGCGCTACTCGTTGCTGGCGGGCGGCAAG
CGCATTCGCCCCATCCTGGCCATTGCCGCCTTCCAGATGTTTGCCGGGGA
GCGCGCGCAGCTGGCGCCCGTCATGCCGGCCGCGCTTGCCGTCGAGATGA
TTCACACCATGAGCTTGATCCACGATGACTTGCCTAGCATGGACAACGAC
GACTTTCGTCGCGGCAAACCCACCAACCACAAGGTGTACGGCGAGGACAT
TGCCATTCTGGCGGGCGATGCCTTGCTGTCCTATGCCTTCGAGTACGTGG
CGCGCAATACCCGCTCCGTCGATCCGGCGCGCGTCGTCGAGGTGCTCGCG
CTGCTCACCAACAGTGTGGGGCCACAGGGCTTGGCCGGCGGCCAGGTCAT
GGACATCAAGTCGGAGGGGCGTTCCGACATTTCCATCGACACCCTCACCT
GGATCCATACCCACAAGACCGCCGCTCTACTGCGCGTCAGCGTCGCATGC
GGCGCCATTCTAGGCGGAGCCTCCGCGGACGACGTTCGTCGCGTCAGCGA
ATTCGCAGTCAAGACGGGGCTTGCCTTCCAGATCGCCGACGACGTGCTGG
ATATTACGCAGAGCACCGAGGTGCTTGGCAAGACTGCTGGAAAGGATCTT
GCTACCGATAAGGCTACGTATCCAAGACTGCTCGGCCTTGACGGCTCAAA
GAAGCAGGCGCAAGCACTTATTCAACAGGCGAAGGAGAGTCTTGCTCCCT
ATGGCGAACGCGCTCGAACGCTTTTCGCGCTTGCCGACTTCATCATTTCT
CGGAATAACTAG
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Coding sequence (CDS) from alignment at tig00000073_pilon:509403..510614-

>Ggra7954.t2 ID=Ggra7954.t2|Name=Ggra7954.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1212bp|location=Sequence derived from alignment at tig00000073_pilon:509403..510614- (Gracilaria gracilis GNS1m male)
ATGCGGCGGCGCTTCGCGCGCTTGCGCCTCAGCCGCTATCATAACGGCGG
CGCGCCATGTGCGCGGCTGCCGCGCGTAGCGACGCGCCCCGCGTCGCGCC
CGCTGCTTGAGATGCTGCTGCCGTCGTTCGCGCACTGCGTGCCGCTGCGC
GCGCCGCGCCGCGTGGCGCGAAAGCCGCGCGCCAGCCGCGCGCCCGTTGC
GCCGCTTGCCGTTGCGCGCCGCCGCGTCACCCCGCCGCCGCAGCACGCTG
CTTCGTCGTCATCGTCATCGTCATCGTCATCGCCGCCGCCGCCGCCGACG
CCCGCGCTGTCGGCTGCCGCGCTGCGAGAGTACCTCGTGCTCAATAAGCG
CCGCGTGGACGAGCAGTTGGAGGCCTGTTTGCAGCTCACCGACGGTCGCA
CCGAGACGCTGGTCAGCGCCATGCGCTACTCGTTGCTGGCGGGCGGCAAG
CGCATTCGCCCCATCCTGGCCATTGCCGCCTTCCAGATGTTTGCCGGGGA
GCGCGCGCAGCTGGCGCCCGTCATGCCGGCCGCGCTTGCCGTCGAGATGA
TTCACACCATGAGCTTGATCCACGATGACTTGCCTAGCATGGACAACGAC
GACTTTCGTCGCGGCAAACCCACCAACCACAAGGTGTACGGCGAGGACAT
TGCCATTCTGGCGGGCGATGCCTTGCTGTCCTATGCCTTCGAGTACGTGG
CGCGCAATACCCGCTCCGTCGATCCGGCGCGCGTCGTCGAGGTGCTCGCG
CTGCTCACCAACAGTGTGGGGCCACAGGGCTTGGCCGGCGGCCAGGTCAT
GGACATCAAGTCGGAGGGGCGTTCCGACATTTCCATCGACACCCTCACCT
GGATCCATACCCACAAGACCGCCGCTCTACTGCGCGTCAGCGTCGCATGC
GGCGCCATTCTAGGCGGAGCCTCCGCGGACGACGTTCGTCGCGTCAGCGA
ATTCGCAGTCAAGACGGGGCTTGCCTTCCAGATCGCCGACGACGTGCTGG
ATATTACGCAGAGCACCGAGGTGCTTGGCAAGACTGCTGGAAAGGATCTT
GCTACCGATAAGGCTACGTATCCAAGACTGCTCGGCCTTGACGGCTCAAA
GAAGCAGGCGCAAGCACTTATTCAACAGGCGAAGGAGAGTCTTGCTCCCT
ATGGCGAACGCGCTCGAACGCTTTTCGCGCTTGCCGACTTCATCATTTCT
CGGAATAACTAG
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