Ggra7952.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7952.t1
Unique NameGgra7952.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length86
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:506557..507141 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7952Ggra7952Gracilaria gracilis GNS1m malegenetig00000073_pilon 506557..507141 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7952.t1Ggra7952.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 506557..507141 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7952.t1.stop1Ggra7952.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 506557..506559 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7952.t1.CDS1Ggra7952.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 506557..506564 -
Ggra7952.t1.CDS2Ggra7952.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000073_pilon 506805..506858 -
Ggra7952.t1.CDS3Ggra7952.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000073_pilon 506946..507141 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7952.t1.exon1Ggra7952.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 506557..506564 -
Ggra7952.t1.exon2Ggra7952.t1.exon2Gracilaria gracilis GNS1m maleexontig00000073_pilon 506805..506858 -
Ggra7952.t1.exon3Ggra7952.t1.exon3Gracilaria gracilis GNS1m maleexontig00000073_pilon 506946..507141 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7952.t1.intron1Ggra7952.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000073_pilon 506565..506804 -
Ggra7952.t1.intron2Ggra7952.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000073_pilon 506859..506945 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7952.t1.start1Ggra7952.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 507139..507141 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7952.t1 ID=Ggra7952.t1|Name=Ggra7952.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=86bp
MKDAYVVCCVWPDASGQHDDAGEPTSAVEGSDVLHHIGEKSQMPNHILYL
FGSDREQFLQRPPPQVKQALHLGLAAHSKAASFLV*
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spliced messenger RNA

>Ggra7952.t1 ID=Ggra7952.t1|Name=Ggra7952.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=258bp|location=Sequence derived from alignment at tig00000073_pilon:506557..507141- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGATGCATACGTGGTGTGCTGTGTATGGCCCGATGCATCGGGCCA
ACATGATGATGCTGGCGAACCAACATCCGCGGTGGAGGGCAGCGACGTGT
TGCACCACATTGGTGAAAAGTCCCAAATGCCAAACCATATTCTGTATCTA
TTTGGATCAGATCGTGAACAGTTTCTGCAACGTCCACCGCCGCAAGTCAA
ACAAGCATTGCATCTTGGTCTAGCCGCACACTCGAAAGCAGCTTCTTTCC
TTGTTTGA
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protein sequence of Ggra7952.t1

>Ggra7952.t1 ID=Ggra7952.t1|Name=Ggra7952.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=86bp
MKDAYVVCCVWPDASGQHDDAGEPTSAVEGSDVLHHIGEKSQMPNHILYL
FGSDREQFLQRPPPQVKQALHLGLAAHSKAASFLV*
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mRNA from alignment at tig00000073_pilon:506557..507141-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7952.t1 ID=Ggra7952.t1|Name=Ggra7952.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=585bp|location=Sequence derived from alignment at tig00000073_pilon:506557..507141- (Gracilaria gracilis GNS1m male)
ATGAAGGATGCATACGTGGTGTGCTGTGTATGGCCCGATGCATCGGGCCA
ACATGATGATGCTGGCGAACCAACATCCGCGGTGGAGGGCAGCGACGTGT
TGCACCACATTGGTGAAAAGTCCCAAATGCCAAACCATATTCTGTATCTA
TTTGGATCAGATCGTGAACAGTTTCTGCAACGTCCACCGCCGCAAGGTGC
ACCGCGGTGCCATTCTTGAACAGGCAAGCAAGCTCGTACGAATGCTCCCC
TCTAGTCGCGCACCCACTTTGGGAGCCCTATAGTCAAACAAGCATTGCAT
CTTGGTCTAGCCGCACACTCGAAAGCAGCTTCTTTCCGTAAGTTTTGCAC
GCATCTCAATACTCCCAATTTAAGATCACTTCAGTTCAGTCCTTCGCAGC
TCCGATATGATGAATCAATGCCTCAAAGAGGTGGGCCTAGTCTCAGTATT
ATGAGGAACCAAAACAATGCAACAACTTTCTGAATCAATTTCCAAGCTGA
ACACTTCGAACAAGGAAGTCCCCATAGTCTCCACTTACTGACCACCATTT
ATGGTATCGTTTCGTTTACCTATTCAGTTGTTTGA
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Coding sequence (CDS) from alignment at tig00000073_pilon:506557..507141-

>Ggra7952.t1 ID=Ggra7952.t1|Name=Ggra7952.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=258bp|location=Sequence derived from alignment at tig00000073_pilon:506557..507141- (Gracilaria gracilis GNS1m male)
ATGAAGGATGCATACGTGGTGTGCTGTGTATGGCCCGATGCATCGGGCCA
ACATGATGATGCTGGCGAACCAACATCCGCGGTGGAGGGCAGCGACGTGT
TGCACCACATTGGTGAAAAGTCCCAAATGCCAAACCATATTCTGTATCTA
TTTGGATCAGATCGTGAACAGTTTCTGCAACGTCCACCGCCGCAAGTCAA
ACAAGCATTGCATCTTGGTCTAGCCGCACACTCGAAAGCAGCTTCTTTCC
TTGTTTGA
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