Ggra7951.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7951.t1
Unique NameGgra7951.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length211
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:505714..506514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7897.ENSLACP00000006808
Preferred nameN6AMT1
PFAMsMTS
Max annot lvl33208|Metazoa
KEGG koko:K19589
GOsGO:0001558,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016740,GO:0016741,GO:0019538,GO:0030307,GO:0032259,GO:0032991,GO:0036211,GO:0040008,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045927,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0065007,GO:0071704,GO:0140096,GO:1901564
Evalue2.17e-36
EggNOG OGsCOG2890@1|root,KOG3191@2759|Eukaryota,39XP3@33154|Opisthokonta,3BIZ2@33208|Metazoa,3CZB8@33213|Bilateria,486TK@7711|Chordata,4913K@7742|Vertebrata
EC2.1.1.297
DescriptionN-6 adenine-specific DNA methyltransferase 1
COG categoryJ
BRITEko00000,ko01000,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7951Ggra7951Gracilaria gracilis GNS1m malegenetig00000073_pilon 505714..506514 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7951.t1Ggra7951.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 505714..506514 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7951.t1.stop1Ggra7951.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 505714..505716 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7951.t1.CDS1Ggra7951.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 505714..506221 -
Ggra7951.t1.CDS2Ggra7951.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000073_pilon 506390..506514 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7951.t1.exon1Ggra7951.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 505714..506221 -
Ggra7951.t1.exon2Ggra7951.t1.exon2Gracilaria gracilis GNS1m maleexontig00000073_pilon 506390..506514 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7951.t1.intron1Ggra7951.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000073_pilon 506222..506389 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7951.t1.start1Ggra7951.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 506512..506514 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7951.t1 ID=Ggra7951.t1|Name=Ggra7951.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=211bp
MDGADGVYPSSEDTFLLIDALHQEKDRLTKIVGSAGACLEIGSGSGLVTE
TLATILPNSFCVTTDVNTLATAKTNQLLRAANLRNVDSAVCDLFTPFRET
FQFDVIVFNPPYVPTDDDELQRALTKHDISASWAGGKDGREVINRFLNSL
NTFLSENGVAYLVVLEANNIAGVTQMAESLGLNVYQVMKRSAGIEKLYIL
RFKKRVVNDS*
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spliced messenger RNA

>Ggra7951.t1 ID=Ggra7951.t1|Name=Ggra7951.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=633bp|location=Sequence derived from alignment at tig00000073_pilon:505714..506514- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGGGGCCGATGGTGTGTATCCGTCGTCGGAGGATACGTTTTTACT
TATAGACGCTTTACACCAAGAGAAAGATCGGTTGACCAAAATCGTCGGGT
CTGCTGGTGCTTGCCTTGAAATCGGGTCTGGCTCTGGATTGGTCACAGAA
ACCCTTGCAACTATACTTCCAAATTCTTTTTGTGTCACAACTGATGTAAA
CACTCTTGCAACAGCGAAGACAAACCAACTTTTGCGGGCTGCCAATCTGC
GGAATGTGGATTCGGCAGTCTGCGATCTCTTCACCCCGTTTCGTGAAACT
TTCCAGTTTGATGTCATAGTGTTTAATCCGCCCTACGTCCCGACGGATGA
CGACGAGCTGCAACGTGCCTTAACCAAACACGATATTTCCGCTTCATGGG
CTGGCGGGAAGGATGGTCGAGAAGTGATAAACAGGTTCCTCAATTCTTTG
AATACTTTCCTCAGTGAAAATGGTGTAGCCTATCTTGTAGTGCTCGAAGC
CAACAATATAGCAGGAGTTACGCAAATGGCCGAAAGTCTCGGTTTAAATG
TGTATCAAGTAATGAAACGAAGTGCTGGTATAGAAAAGTTGTACATCTTA
CGATTTAAAAAGCGAGTCGTCAACGACTCATAA
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protein sequence of Ggra7951.t1

>Ggra7951.t1 ID=Ggra7951.t1|Name=Ggra7951.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=211bp
MDGADGVYPSSEDTFLLIDALHQEKDRLTKIVGSAGACLEIGSGSGLVTE
TLATILPNSFCVTTDVNTLATAKTNQLLRAANLRNVDSAVCDLFTPFRET
FQFDVIVFNPPYVPTDDDELQRALTKHDISASWAGGKDGREVINRFLNSL
NTFLSENGVAYLVVLEANNIAGVTQMAESLGLNVYQVMKRSAGIEKLYIL
RFKKRVVNDS*
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mRNA from alignment at tig00000073_pilon:505714..506514-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7951.t1 ID=Ggra7951.t1|Name=Ggra7951.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=801bp|location=Sequence derived from alignment at tig00000073_pilon:505714..506514- (Gracilaria gracilis GNS1m male)
ATGGATGGGGCCGATGGTGTGTATCCGTCGTCGGAGGATACGTTTTTACT
TATAGACGCTTTACACCAAGAGAAAGATCGGTTGACCAAAATCGTCGGGT
CTGCTGGTGCTTGCCTTGAAATCGGGTACGTACATTGACTTCTTTTCTGT
CTTACGGTTCTTTCCTTCAAACCGAGAGCCTGTACTTATATCATACCTAT
TGCTGTTATTTAGAACGGCCATACATCTTTATTCTGGTTATAGTTGCTAA
TATTGGCGCTTTGAGTAAATGGAAATGTTTTCTTCAAGCACAGGTCTGGC
TCTGGATTGGTCACAGAAACCCTTGCAACTATACTTCCAAATTCTTTTTG
TGTCACAACTGATGTAAACACTCTTGCAACAGCGAAGACAAACCAACTTT
TGCGGGCTGCCAATCTGCGGAATGTGGATTCGGCAGTCTGCGATCTCTTC
ACCCCGTTTCGTGAAACTTTCCAGTTTGATGTCATAGTGTTTAATCCGCC
CTACGTCCCGACGGATGACGACGAGCTGCAACGTGCCTTAACCAAACACG
ATATTTCCGCTTCATGGGCTGGCGGGAAGGATGGTCGAGAAGTGATAAAC
AGGTTCCTCAATTCTTTGAATACTTTCCTCAGTGAAAATGGTGTAGCCTA
TCTTGTAGTGCTCGAAGCCAACAATATAGCAGGAGTTACGCAAATGGCCG
AAAGTCTCGGTTTAAATGTGTATCAAGTAATGAAACGAAGTGCTGGTATA
GAAAAGTTGTACATCTTACGATTTAAAAAGCGAGTCGTCAACGACTCATA
A
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Coding sequence (CDS) from alignment at tig00000073_pilon:505714..506514-

>Ggra7951.t1 ID=Ggra7951.t1|Name=Ggra7951.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=633bp|location=Sequence derived from alignment at tig00000073_pilon:505714..506514- (Gracilaria gracilis GNS1m male)
ATGGATGGGGCCGATGGTGTGTATCCGTCGTCGGAGGATACGTTTTTACT
TATAGACGCTTTACACCAAGAGAAAGATCGGTTGACCAAAATCGTCGGGT
CTGCTGGTGCTTGCCTTGAAATCGGGTCTGGCTCTGGATTGGTCACAGAA
ACCCTTGCAACTATACTTCCAAATTCTTTTTGTGTCACAACTGATGTAAA
CACTCTTGCAACAGCGAAGACAAACCAACTTTTGCGGGCTGCCAATCTGC
GGAATGTGGATTCGGCAGTCTGCGATCTCTTCACCCCGTTTCGTGAAACT
TTCCAGTTTGATGTCATAGTGTTTAATCCGCCCTACGTCCCGACGGATGA
CGACGAGCTGCAACGTGCCTTAACCAAACACGATATTTCCGCTTCATGGG
CTGGCGGGAAGGATGGTCGAGAAGTGATAAACAGGTTCCTCAATTCTTTG
AATACTTTCCTCAGTGAAAATGGTGTAGCCTATCTTGTAGTGCTCGAAGC
CAACAATATAGCAGGAGTTACGCAAATGGCCGAAAGTCTCGGTTTAAATG
TGTATCAAGTAATGAAACGAAGTGCTGGTATAGAAAAGTTGTACATCTTA
CGATTTAAAAAGCGAGTCGTCAACGACTCATAA
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