Ggra7932.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7932.t1
Unique NameGgra7932.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length192
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:464686..465261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45351.EDO42412
Preferred namePPIH
PFAMsPro_isomerase
Max annot lvl33208|Metazoa
KEGG koko:K09567
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006457,GO:0006464,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016018,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0022607,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0033218,GO:0034641,GO:0036211,GO:0042277,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043900,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045069,GO:0045070,GO:0046483,GO:0046540,GO:0048518,GO:0048524,GO:0050789,GO:0050792,GO:0065003,GO:0065007,GO:0070013,GO:0071001,GO:0071704,GO:0071840,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:0140096,GO:1901360,GO:1901564,GO:1903900,GO:1903902,GO:1990904
Evalue2.72e-76
EggNOG OGsCOG0652@1|root,KOG0879@2759|Eukaryota,38S5T@33154|Opisthokonta,3BGNF@33208|Metazoa
EC5.2.1.8
Descriptionpeptidyl-prolyl cis-trans isomerase activity
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7932Ggra7932Gracilaria gracilis GNS1m malegenetig00000073_pilon 464686..465261 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7932.t1.start1Ggra7932.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 464686..464688 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7932.t1.CDS1Ggra7932.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 464686..465261 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7932.t1.exon1Ggra7932.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 464686..465261 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7932.t1.stop1Ggra7932.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 465259..465261 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7932.t1Ggra7932.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 464686..465261 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7932.t1 ID=Ggra7932.t1|Name=Ggra7932.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=192bp
MIPAPVGDPTDALHHHDEENPIVFLDISIGNEEVGRITLELFADVCPKTA
ENFRQFCTGQYRKDNKPIGYKDVLFHRIVKSFMIQGGDFVNGNGTGCMSI
YGEKAFHDESLGAFRHSGAGILAMANSGPNTNGNQFYITCKQCSFLDGKH
VVFGKVTNEESMDVVKRLENVAVDNSNRPLLTCKVVQCGEL*
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spliced messenger RNA

>Ggra7932.t1 ID=Ggra7932.t1|Name=Ggra7932.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=576bp|location=Sequence derived from alignment at tig00000073_pilon:464686..465261+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATACCAGCTCCGGTGGGGGATCCAACGGACGCTCTTCATCACCACGA
TGAGGAGAATCCAATCGTCTTCCTGGACATAAGCATCGGGAACGAAGAGG
TTGGGCGAATAACTCTTGAGCTTTTTGCAGACGTCTGTCCGAAGACCGCT
GAGAATTTTCGCCAGTTCTGCACCGGTCAGTACAGAAAAGATAACAAGCC
AATCGGATATAAAGATGTTCTATTTCATCGGATCGTGAAGAGTTTCATGA
TACAAGGAGGGGATTTTGTCAACGGTAATGGGACCGGCTGCATGTCCATA
TATGGAGAGAAAGCGTTCCACGATGAATCCCTCGGTGCCTTTCGCCATTC
TGGCGCTGGGATCCTCGCCATGGCTAACAGTGGTCCCAACACCAACGGTA
ATCAGTTCTACATCACATGCAAGCAATGCTCTTTTCTGGATGGAAAACAC
GTTGTGTTTGGAAAAGTGACTAACGAAGAGTCGATGGATGTGGTGAAAAG
GTTAGAAAACGTTGCCGTGGACAACAGCAATCGGCCACTTCTTACTTGCA
AAGTTGTGCAATGCGGAGAACTTTAA
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protein sequence of Ggra7932.t1

>Ggra7932.t1 ID=Ggra7932.t1|Name=Ggra7932.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=192bp
MIPAPVGDPTDALHHHDEENPIVFLDISIGNEEVGRITLELFADVCPKTA
ENFRQFCTGQYRKDNKPIGYKDVLFHRIVKSFMIQGGDFVNGNGTGCMSI
YGEKAFHDESLGAFRHSGAGILAMANSGPNTNGNQFYITCKQCSFLDGKH
VVFGKVTNEESMDVVKRLENVAVDNSNRPLLTCKVVQCGEL*
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mRNA from alignment at tig00000073_pilon:464686..465261+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7932.t1 ID=Ggra7932.t1|Name=Ggra7932.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=576bp|location=Sequence derived from alignment at tig00000073_pilon:464686..465261+ (Gracilaria gracilis GNS1m male)
ATGATACCAGCTCCGGTGGGGGATCCAACGGACGCTCTTCATCACCACGA
TGAGGAGAATCCAATCGTCTTCCTGGACATAAGCATCGGGAACGAAGAGG
TTGGGCGAATAACTCTTGAGCTTTTTGCAGACGTCTGTCCGAAGACCGCT
GAGAATTTTCGCCAGTTCTGCACCGGTCAGTACAGAAAAGATAACAAGCC
AATCGGATATAAAGATGTTCTATTTCATCGGATCGTGAAGAGTTTCATGA
TACAAGGAGGGGATTTTGTCAACGGTAATGGGACCGGCTGCATGTCCATA
TATGGAGAGAAAGCGTTCCACGATGAATCCCTCGGTGCCTTTCGCCATTC
TGGCGCTGGGATCCTCGCCATGGCTAACAGTGGTCCCAACACCAACGGTA
ATCAGTTCTACATCACATGCAAGCAATGCTCTTTTCTGGATGGAAAACAC
GTTGTGTTTGGAAAAGTGACTAACGAAGAGTCGATGGATGTGGTGAAAAG
GTTAGAAAACGTTGCCGTGGACAACAGCAATCGGCCACTTCTTACTTGCA
AAGTTGTGCAATGCGGAGAACTTTAA
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Coding sequence (CDS) from alignment at tig00000073_pilon:464686..465261+

>Ggra7932.t1 ID=Ggra7932.t1|Name=Ggra7932.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=576bp|location=Sequence derived from alignment at tig00000073_pilon:464686..465261+ (Gracilaria gracilis GNS1m male)
ATGATACCAGCTCCGGTGGGGGATCCAACGGACGCTCTTCATCACCACGA
TGAGGAGAATCCAATCGTCTTCCTGGACATAAGCATCGGGAACGAAGAGG
TTGGGCGAATAACTCTTGAGCTTTTTGCAGACGTCTGTCCGAAGACCGCT
GAGAATTTTCGCCAGTTCTGCACCGGTCAGTACAGAAAAGATAACAAGCC
AATCGGATATAAAGATGTTCTATTTCATCGGATCGTGAAGAGTTTCATGA
TACAAGGAGGGGATTTTGTCAACGGTAATGGGACCGGCTGCATGTCCATA
TATGGAGAGAAAGCGTTCCACGATGAATCCCTCGGTGCCTTTCGCCATTC
TGGCGCTGGGATCCTCGCCATGGCTAACAGTGGTCCCAACACCAACGGTA
ATCAGTTCTACATCACATGCAAGCAATGCTCTTTTCTGGATGGAAAACAC
GTTGTGTTTGGAAAAGTGACTAACGAAGAGTCGATGGATGTGGTGAAAAG
GTTAGAAAACGTTGCCGTGGACAACAGCAATCGGCCACTTCTTACTTGCA
AAGTTGTGCAATGCGGAGAACTTTAA
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