Ggra7891.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7891.t1
Unique NameGgra7891.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length158
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:257022..257647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog313612.L8106_14105
PFAMsDUF3067
Max annot lvl1117|Cyanobacteria
Evalue2.93e-19
EggNOG OGs2AH3C@1|root,317CS@2|Bacteria,1G6IY@1117|Cyanobacteria,1HBGX@1150|Oscillatoriales
DescriptionDomain of unknown function (DUF3067)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7891Ggra7891Gracilaria gracilis GNS1m malegenetig00000073_pilon 257022..257647 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7891.t1Ggra7891.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 257022..257647 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7891.t1.start1Ggra7891.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 257022..257024 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7891.t1.CDS1Ggra7891.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 257022..257273 +
Ggra7891.t1.CDS2Ggra7891.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000073_pilon 257343..257487 +
Ggra7891.t1.CDS3Ggra7891.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000073_pilon 257571..257647 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7891.t1.exon1Ggra7891.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 257022..257273 +
Ggra7891.t1.exon2Ggra7891.t1.exon2Gracilaria gracilis GNS1m maleexontig00000073_pilon 257343..257487 +
Ggra7891.t1.exon3Ggra7891.t1.exon3Gracilaria gracilis GNS1m maleexontig00000073_pilon 257571..257647 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7891.t1.intron1Ggra7891.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000073_pilon 257274..257342 +
Ggra7891.t1.intron2Ggra7891.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000073_pilon 257488..257570 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7891.t1.stop1Ggra7891.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 257645..257647 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7891.t1 ID=Ggra7891.t1|Name=Ggra7891.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=158bp
MPRRFTIRATEEKFDIEEFKRSEQIRVNQMRSRLEGLFGVEEQQLQSTDA
ETFDGEALRTVVRQRWGVEYDVQPQKRGERVYVQIMWRYFEQQSFYLDEY
DFACHCEAVAQLLRKWNAVDYFCDYIASTKKRPVVGITINIPIPGINAST
AAFEDAS*
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spliced messenger RNA

>Ggra7891.t1 ID=Ggra7891.t1|Name=Ggra7891.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=474bp|location=Sequence derived from alignment at tig00000073_pilon:257022..257647+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAAGGCGTTTCACAATTCGCGCAACAGAGGAAAAGTTTGACATCGA
GGAATTCAAACGAAGCGAGCAAATCAGAGTGAATCAAATGCGCTCTCGTT
TGGAAGGTTTGTTCGGAGTGGAAGAGCAACAACTGCAGTCAACTGATGCC
GAAACCTTTGATGGAGAGGCGTTGCGAACTGTTGTGAGACAGCGTTGGGG
CGTTGAATATGATGTTCAACCACAGAAACGGGGAGAACGCGTTTATGTAC
AGATTATGTGGAGGTATTTTGAGCAACAGAGCTTCTACCTGGATGAGTAT
GACTTCGCCTGCCATTGTGAAGCAGTTGCCCAACTACTGCGTAAGTGGAA
CGCTGTAGATTACTTTTGTGATTACATTGCATCTACGAAGAAAAGACCTG
TGGTTGGCATTACTATCAATATTCCGATTCCTGGAATTAATGCGTCCACC
GCGGCGTTTGAAGACGCGAGCTAA
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protein sequence of Ggra7891.t1

>Ggra7891.t1 ID=Ggra7891.t1|Name=Ggra7891.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=158bp
MPRRFTIRATEEKFDIEEFKRSEQIRVNQMRSRLEGLFGVEEQQLQSTDA
ETFDGEALRTVVRQRWGVEYDVQPQKRGERVYVQIMWRYFEQQSFYLDEY
DFACHCEAVAQLLRKWNAVDYFCDYIASTKKRPVVGITINIPIPGINAST
AAFEDAS*
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mRNA from alignment at tig00000073_pilon:257022..257647+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7891.t1 ID=Ggra7891.t1|Name=Ggra7891.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=626bp|location=Sequence derived from alignment at tig00000073_pilon:257022..257647+ (Gracilaria gracilis GNS1m male)
ATGCCAAGGCGTTTCACAATTCGCGCAACAGAGGAAAAGTTTGACATCGA
GGAATTCAAACGAAGCGAGCAAATCAGAGTGAATCAAATGCGCTCTCGTT
TGGAAGGTTTGTTCGGAGTGGAAGAGCAACAACTGCAGTCAACTGATGCC
GAAACCTTTGATGGAGAGGCGTTGCGAACTGTTGTGAGACAGCGTTGGGG
CGTTGAATATGATGTTCAACCACAGAAACGGGGAGAACGCGTTTATGTAC
AGGTATCTTTAGCCTTAGTCATTTTGCAGCTTGTTTTGAACAGAAGATGT
GTACTAACTGGCATTGCGTAGATTATGTGGAGGTATTTTGAGCAACAGAG
CTTCTACCTGGATGAGTATGACTTCGCCTGCCATTGTGAAGCAGTTGCCC
AACTACTGCGTAAGTGGAACGCTGTAGATTACTTTTGTGATTACATTGCA
TCTACGAAGAAAAGACGTAAGTTCTGGTATTCCTTCAGAGTTTGCATCAG
GATAACTGTTACTGACCAAATCGAATCCATGCTAATCAAATTGGAGCAGC
TGTGGTTGGCATTACTATCAATATTCCGATTCCTGGAATTAATGCGTCCA
CCGCGGCGTTTGAAGACGCGAGCTAA
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Coding sequence (CDS) from alignment at tig00000073_pilon:257022..257647+

>Ggra7891.t1 ID=Ggra7891.t1|Name=Ggra7891.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=474bp|location=Sequence derived from alignment at tig00000073_pilon:257022..257647+ (Gracilaria gracilis GNS1m male)
ATGCCAAGGCGTTTCACAATTCGCGCAACAGAGGAAAAGTTTGACATCGA
GGAATTCAAACGAAGCGAGCAAATCAGAGTGAATCAAATGCGCTCTCGTT
TGGAAGGTTTGTTCGGAGTGGAAGAGCAACAACTGCAGTCAACTGATGCC
GAAACCTTTGATGGAGAGGCGTTGCGAACTGTTGTGAGACAGCGTTGGGG
CGTTGAATATGATGTTCAACCACAGAAACGGGGAGAACGCGTTTATGTAC
AGATTATGTGGAGGTATTTTGAGCAACAGAGCTTCTACCTGGATGAGTAT
GACTTCGCCTGCCATTGTGAAGCAGTTGCCCAACTACTGCGTAAGTGGAA
CGCTGTAGATTACTTTTGTGATTACATTGCATCTACGAAGAAAAGACCTG
TGGTTGGCATTACTATCAATATTCCGATTCCTGGAATTAATGCGTCCACC
GCGGCGTTTGAAGACGCGAGCTAA
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