Ggra7883.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7883.t1
Unique NameGgra7883.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length359
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:234414..235490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMI219CT
PFAMsGST_N_3
Max annot lvl2759|Eukaryota
KEGG koko:K03354
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
Evalue1.82e-90
EggNOG OGs28NCX@1|root,2QUYC@2759|Eukaryota
DescriptionGlutathione S-transferase, N-terminal domain
COG categoryS
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7883Ggra7883Gracilaria gracilis GNS1m malegenetig00000073_pilon 234414..235490 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7883.t1.stop1Ggra7883.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 234414..234416 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7883.t1.CDS1Ggra7883.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 234414..235490 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7883.t1.exon1Ggra7883.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 234414..235490 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7883.t1.start1Ggra7883.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 235488..235490 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7883.t1Ggra7883.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 234414..235490 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7883.t1 ID=Ggra7883.t1|Name=Ggra7883.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=359bp
MAFVTSIPLLRVQRRALATAKRYATPVATATKPEPPKDFSPPKPRRFYIR
PDKAIDIAQGSAGQLLRAYAGVFVEGYRLKTEDGKLVEYSATLPKSKPTI
PLRLFEFEACPFCRKVREAVTMLDLDVLVFPCPKDGVLYRQFVTDTGGKA
QFPYLIDPNTDFSGYESDDIIKYLYKTYGPSGARVPLVISNVTTLTAGLA
ASFRRGRGRARMSKTVPAGKPLELWGYEASPFVRLVRETLAELELPYFLH
TTARGSVKRAELKDMVGRFQVPYLVDPNTDIAMFESAEICEYLRATYGPD
AAGAVTTPDAASAFMPGDAWDMEPAEEKSLDPQMQTDEVLEQYCEENPES
DECRVYED*
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spliced messenger RNA

>Ggra7883.t1 ID=Ggra7883.t1|Name=Ggra7883.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00000073_pilon:234414..235490- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTTTGTCACAAGCATACCTTTACTCCGCGTGCAGCGGAGAGCGCT
CGCCACTGCGAAGCGTTACGCCACGCCGGTAGCCACCGCCACCAAACCGG
AGCCCCCGAAAGACTTTTCTCCGCCAAAGCCGCGTCGCTTTTACATCCGT
CCTGACAAGGCGATCGACATAGCACAAGGCAGTGCCGGTCAGCTGCTCAG
AGCGTATGCGGGCGTCTTTGTGGAAGGCTATCGACTAAAGACTGAAGATG
GAAAACTCGTCGAGTACTCAGCAACACTGCCCAAGTCAAAGCCCACAATT
CCGTTGCGCCTCTTCGAGTTCGAGGCCTGCCCTTTCTGTAGGAAGGTACG
GGAGGCTGTCACCATGCTTGATCTGGATGTGCTGGTGTTCCCTTGCCCGA
AGGACGGCGTTCTCTATCGTCAATTCGTCACGGACACGGGTGGAAAGGCC
CAGTTTCCGTATCTAATCGACCCGAACACCGACTTTTCTGGCTACGAATC
AGACGACATCATCAAGTACTTGTACAAGACGTATGGACCTTCTGGTGCGC
GTGTACCACTTGTCATCAGTAATGTCACCACCTTGACCGCGGGACTTGCA
GCCAGCTTCCGCAGAGGACGTGGTCGCGCTCGAATGAGCAAGACAGTGCC
TGCCGGTAAGCCCCTCGAACTGTGGGGGTATGAAGCTTCTCCGTTCGTTC
GTCTTGTGCGCGAGACGCTTGCGGAACTGGAGTTGCCGTACTTCCTACAC
ACCACGGCAAGGGGCTCAGTGAAAAGGGCCGAACTCAAGGATATGGTGGG
TAGGTTCCAAGTACCGTACCTGGTGGATCCAAATACTGATATTGCCATGT
TCGAAAGTGCCGAAATCTGCGAATACTTGCGTGCTACTTACGGCCCCGAT
GCCGCTGGCGCGGTCACGACGCCGGATGCTGCTTCGGCATTCATGCCTGG
AGATGCGTGGGATATGGAGCCTGCAGAGGAAAAGTCCCTAGACCCACAAA
TGCAGACGGACGAGGTTCTTGAGCAATACTGTGAGGAGAATCCAGAAAGC
GATGAATGTCGAGTGTATGAAGATTAG
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protein sequence of Ggra7883.t1

>Ggra7883.t1 ID=Ggra7883.t1|Name=Ggra7883.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=359bp
MAFVTSIPLLRVQRRALATAKRYATPVATATKPEPPKDFSPPKPRRFYIR
PDKAIDIAQGSAGQLLRAYAGVFVEGYRLKTEDGKLVEYSATLPKSKPTI
PLRLFEFEACPFCRKVREAVTMLDLDVLVFPCPKDGVLYRQFVTDTGGKA
QFPYLIDPNTDFSGYESDDIIKYLYKTYGPSGARVPLVISNVTTLTAGLA
ASFRRGRGRARMSKTVPAGKPLELWGYEASPFVRLVRETLAELELPYFLH
TTARGSVKRAELKDMVGRFQVPYLVDPNTDIAMFESAEICEYLRATYGPD
AAGAVTTPDAASAFMPGDAWDMEPAEEKSLDPQMQTDEVLEQYCEENPES
DECRVYED*
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mRNA from alignment at tig00000073_pilon:234414..235490-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7883.t1 ID=Ggra7883.t1|Name=Ggra7883.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00000073_pilon:234414..235490- (Gracilaria gracilis GNS1m male)
ATGGCGTTTGTCACAAGCATACCTTTACTCCGCGTGCAGCGGAGAGCGCT
CGCCACTGCGAAGCGTTACGCCACGCCGGTAGCCACCGCCACCAAACCGG
AGCCCCCGAAAGACTTTTCTCCGCCAAAGCCGCGTCGCTTTTACATCCGT
CCTGACAAGGCGATCGACATAGCACAAGGCAGTGCCGGTCAGCTGCTCAG
AGCGTATGCGGGCGTCTTTGTGGAAGGCTATCGACTAAAGACTGAAGATG
GAAAACTCGTCGAGTACTCAGCAACACTGCCCAAGTCAAAGCCCACAATT
CCGTTGCGCCTCTTCGAGTTCGAGGCCTGCCCTTTCTGTAGGAAGGTACG
GGAGGCTGTCACCATGCTTGATCTGGATGTGCTGGTGTTCCCTTGCCCGA
AGGACGGCGTTCTCTATCGTCAATTCGTCACGGACACGGGTGGAAAGGCC
CAGTTTCCGTATCTAATCGACCCGAACACCGACTTTTCTGGCTACGAATC
AGACGACATCATCAAGTACTTGTACAAGACGTATGGACCTTCTGGTGCGC
GTGTACCACTTGTCATCAGTAATGTCACCACCTTGACCGCGGGACTTGCA
GCCAGCTTCCGCAGAGGACGTGGTCGCGCTCGAATGAGCAAGACAGTGCC
TGCCGGTAAGCCCCTCGAACTGTGGGGGTATGAAGCTTCTCCGTTCGTTC
GTCTTGTGCGCGAGACGCTTGCGGAACTGGAGTTGCCGTACTTCCTACAC
ACCACGGCAAGGGGCTCAGTGAAAAGGGCCGAACTCAAGGATATGGTGGG
TAGGTTCCAAGTACCGTACCTGGTGGATCCAAATACTGATATTGCCATGT
TCGAAAGTGCCGAAATCTGCGAATACTTGCGTGCTACTTACGGCCCCGAT
GCCGCTGGCGCGGTCACGACGCCGGATGCTGCTTCGGCATTCATGCCTGG
AGATGCGTGGGATATGGAGCCTGCAGAGGAAAAGTCCCTAGACCCACAAA
TGCAGACGGACGAGGTTCTTGAGCAATACTGTGAGGAGAATCCAGAAAGC
GATGAATGTCGAGTGTATGAAGATTAG
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Coding sequence (CDS) from alignment at tig00000073_pilon:234414..235490-

>Ggra7883.t1 ID=Ggra7883.t1|Name=Ggra7883.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1077bp|location=Sequence derived from alignment at tig00000073_pilon:234414..235490- (Gracilaria gracilis GNS1m male)
ATGGCGTTTGTCACAAGCATACCTTTACTCCGCGTGCAGCGGAGAGCGCT
CGCCACTGCGAAGCGTTACGCCACGCCGGTAGCCACCGCCACCAAACCGG
AGCCCCCGAAAGACTTTTCTCCGCCAAAGCCGCGTCGCTTTTACATCCGT
CCTGACAAGGCGATCGACATAGCACAAGGCAGTGCCGGTCAGCTGCTCAG
AGCGTATGCGGGCGTCTTTGTGGAAGGCTATCGACTAAAGACTGAAGATG
GAAAACTCGTCGAGTACTCAGCAACACTGCCCAAGTCAAAGCCCACAATT
CCGTTGCGCCTCTTCGAGTTCGAGGCCTGCCCTTTCTGTAGGAAGGTACG
GGAGGCTGTCACCATGCTTGATCTGGATGTGCTGGTGTTCCCTTGCCCGA
AGGACGGCGTTCTCTATCGTCAATTCGTCACGGACACGGGTGGAAAGGCC
CAGTTTCCGTATCTAATCGACCCGAACACCGACTTTTCTGGCTACGAATC
AGACGACATCATCAAGTACTTGTACAAGACGTATGGACCTTCTGGTGCGC
GTGTACCACTTGTCATCAGTAATGTCACCACCTTGACCGCGGGACTTGCA
GCCAGCTTCCGCAGAGGACGTGGTCGCGCTCGAATGAGCAAGACAGTGCC
TGCCGGTAAGCCCCTCGAACTGTGGGGGTATGAAGCTTCTCCGTTCGTTC
GTCTTGTGCGCGAGACGCTTGCGGAACTGGAGTTGCCGTACTTCCTACAC
ACCACGGCAAGGGGCTCAGTGAAAAGGGCCGAACTCAAGGATATGGTGGG
TAGGTTCCAAGTACCGTACCTGGTGGATCCAAATACTGATATTGCCATGT
TCGAAAGTGCCGAAATCTGCGAATACTTGCGTGCTACTTACGGCCCCGAT
GCCGCTGGCGCGGTCACGACGCCGGATGCTGCTTCGGCATTCATGCCTGG
AGATGCGTGGGATATGGAGCCTGCAGAGGAAAAGTCCCTAGACCCACAAA
TGCAGACGGACGAGGTTCTTGAGCAATACTGTGAGGAGAATCCAGAAAGC
GATGAATGTCGAGTGTATGAAGATTAG
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