Ggra7834.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7834.t1
Unique NameGgra7834.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length709
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:84709..86835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42345.XP_008788954.1
PFAMsSec23_helical,Sec23_trunk,zf-Sec23_Sec24
Max annot lvl35493|Streptophyta
KEGG koko:K14007
KEGG Pathwayko04141,map04141
KEGG ModuleM00404
Evalue1.13e-60
EggNOG OGsCOG5028@1|root,KOG1985@2759|Eukaryota,37RFQ@33090|Viridiplantae,3GF2M@35493|Streptophyta,3KV63@4447|Liliopsida
DescriptionSec23/Sec24 trunk domain
COG categoryU
BRITEko00000,ko00001,ko00002,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7834Ggra7834Gracilaria gracilis GNS1m malegenetig00000073_pilon 84709..86835 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7834.t1.stop1Ggra7834.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 84709..84711 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7834.t1.CDS1Ggra7834.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 84709..86835 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7834.t1.exon1Ggra7834.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 84709..86835 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7834.t1.start1Ggra7834.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 86833..86835 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7834.t1Ggra7834.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 84709..86835 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7834.t1 ID=Ggra7834.t1|Name=Ggra7834.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=709bp
MLRPTSRRVPTSAAVQARAALPCGVLVTPLAPSPPPRSVLAYEASLPPAA
LQSYKAAAATTSAAIPRCSECRAYVATVCSMNARYWRCAICSASNVLPQR
YSPVLLAEPEALHIVPELSRDIYDLPVDNIITPSPTAYVFIVDANGSHMF
LDAVRQAIRQSLLSLDALSTVGIILYDENVTLFDLRANLLRSLSSQDADV
NASHVFPPDQWLRQTSPDVIDTIVSMLGKLRPPSPPDSTTPPKSALGAAV
TAALDMIESAQLLASRIVVMATTEPNLGEGAVQYPSEPDDRQPDVPSTAL
STFYEQAGLRANLLGAMFDVYFSCTTSVHVATLSPLAQISGGRFILYDSG
EESLAKDVWQHLNDPAVVRGLLRVRTSSNIDVADVYGCGVYQDSQVPEVY
RLNCHGHTSTLAVEFRVKEQAPPPTVRLASVQLAFQGVFIEPGALPQRVL
RVQTQSYPLTASGSAVRKEADANSVTTLLFHKAVAAADEQSITAARMLLF
DWLAILFSRTAKTPPDGDAPVVDAKLTRYPALQPIPRLIFGLVRSSLFRQ
DAVDPDARAALRCVWEDLSPELLAAAAYPRLYSFLSLQEKSNRELPLSLA
AVKESGHPIFLLDAFSDIVIYYAATSNRKDLPYPPPDSSTVMRVRGQCTR
DRPIAPKCVTCREGTPKDGWFKSFLIEDTLPGAGAQSFSAFLLGVVDAAE
DILRSVRK*
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spliced messenger RNA

>Ggra7834.t1 ID=Ggra7834.t1|Name=Ggra7834.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2127bp|location=Sequence derived from alignment at tig00000073_pilon:84709..86835- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTACGTCCGACCAGTCGGCGCGTCCCCACGAGCGCCGCCGTGCAGGC
GCGCGCCGCTCTGCCGTGCGGCGTTTTGGTCACCCCGCTCGCGCCTTCGC
CCCCGCCCAGGTCCGTCTTGGCGTATGAAGCTTCCTTGCCGCCCGCCGCT
TTGCAGTCGTATAAGGCGGCTGCCGCTACTACTTCGGCTGCTATTCCGAG
ATGTTCCGAATGTCGTGCGTATGTTGCTACCGTTTGTAGCATGAATGCGC
GCTATTGGCGCTGTGCCATTTGTTCCGCTTCCAATGTATTGCCGCAGCGC
TATTCGCCCGTGCTGCTCGCGGAGCCCGAGGCTTTGCATATTGTGCCGGA
GCTTTCGAGGGATATCTATGATCTGCCTGTGGACAATATCATCACCCCGT
CGCCTACCGCTTATGTGTTCATTGTGGATGCCAATGGCTCGCACATGTTT
CTGGATGCCGTCAGGCAGGCCATTCGTCAATCGTTGTTGTCCTTGGATGC
TTTGTCCACGGTCGGTATCATCTTGTACGACGAGAACGTCACTCTTTTCG
ATCTTCGTGCAAACCTTCTTCGCTCGCTCTCATCGCAGGATGCCGATGTT
AATGCGTCGCACGTCTTCCCTCCAGATCAGTGGCTGCGTCAGACCAGCCC
TGACGTCATCGACACCATTGTTTCAATGCTGGGCAAGCTCAGACCGCCTT
CTCCACCCGACTCTACCACACCGCCCAAGAGTGCCCTGGGTGCTGCGGTT
ACGGCCGCTCTCGATATGATTGAGAGCGCTCAGCTACTTGCCTCGCGCAT
CGTCGTCATGGCTACAACCGAACCCAACTTGGGTGAAGGTGCCGTTCAAT
ATCCATCCGAACCAGATGACCGCCAACCAGATGTGCCATCCACAGCGCTC
TCGACGTTCTATGAACAGGCTGGCTTGCGTGCTAATTTGCTCGGCGCCAT
GTTTGACGTGTACTTCTCATGTACCACTTCTGTGCATGTTGCTACTCTTT
CGCCGCTGGCGCAGATCAGCGGTGGCAGATTCATTCTGTATGATTCAGGG
GAAGAGAGTCTGGCGAAAGATGTCTGGCAACACCTCAATGACCCGGCTGT
CGTTCGAGGCCTCTTGCGCGTCAGAACCAGTTCTAACATAGACGTTGCTG
ATGTTTACGGATGTGGCGTATATCAAGATAGTCAAGTGCCAGAGGTGTAT
CGCTTGAATTGCCATGGCCATACTTCTACCTTGGCGGTCGAGTTCCGGGT
CAAGGAGCAAGCTCCTCCTCCAACTGTACGACTTGCTAGCGTACAGCTTG
CTTTTCAAGGCGTTTTCATTGAACCGGGTGCGCTTCCGCAAAGGGTTCTC
CGCGTTCAGACTCAATCTTACCCACTCACGGCGTCAGGCTCGGCTGTGAG
AAAAGAGGCCGACGCGAATTCTGTGACCACGCTGCTGTTCCACAAGGCGG
TCGCGGCCGCAGATGAGCAAAGCATCACCGCGGCGCGAATGCTGCTCTTC
GACTGGTTGGCTATCCTGTTCTCGAGGACAGCCAAAACTCCCCCAGATGG
AGATGCTCCGGTGGTTGATGCCAAGCTGACAAGATATCCCGCACTGCAAC
CAATCCCACGCCTTATCTTTGGGCTTGTTCGCAGCTCTCTTTTCCGCCAG
GATGCTGTTGATCCGGATGCTCGAGCCGCTTTGCGCTGCGTTTGGGAGGA
TTTGAGTCCTGAGCTGCTTGCGGCCGCGGCTTACCCGCGCTTGTATTCAT
TCTTGAGCCTGCAAGAAAAGAGCAATCGGGAATTGCCGTTGTCGTTAGCT
GCTGTCAAAGAGAGCGGCCATCCGATATTCTTGCTCGATGCGTTTTCCGA
TATTGTTATCTACTATGCTGCAACGTCGAATAGGAAAGACCTACCGTATC
CCCCTCCGGATTCTAGTACAGTAATGCGTGTACGTGGACAATGTACTAGG
GACAGACCTATCGCACCAAAGTGCGTCACTTGTCGCGAAGGCACTCCGAA
AGATGGATGGTTTAAGTCTTTCCTCATTGAGGATACTCTTCCAGGAGCAG
GCGCTCAATCGTTTTCTGCTTTCCTGTTAGGTGTTGTGGATGCTGCTGAG
GATATTTTACGAAGCGTTAGAAAGTAA
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protein sequence of Ggra7834.t1

>Ggra7834.t1 ID=Ggra7834.t1|Name=Ggra7834.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=709bp
MLRPTSRRVPTSAAVQARAALPCGVLVTPLAPSPPPRSVLAYEASLPPAA
LQSYKAAAATTSAAIPRCSECRAYVATVCSMNARYWRCAICSASNVLPQR
YSPVLLAEPEALHIVPELSRDIYDLPVDNIITPSPTAYVFIVDANGSHMF
LDAVRQAIRQSLLSLDALSTVGIILYDENVTLFDLRANLLRSLSSQDADV
NASHVFPPDQWLRQTSPDVIDTIVSMLGKLRPPSPPDSTTPPKSALGAAV
TAALDMIESAQLLASRIVVMATTEPNLGEGAVQYPSEPDDRQPDVPSTAL
STFYEQAGLRANLLGAMFDVYFSCTTSVHVATLSPLAQISGGRFILYDSG
EESLAKDVWQHLNDPAVVRGLLRVRTSSNIDVADVYGCGVYQDSQVPEVY
RLNCHGHTSTLAVEFRVKEQAPPPTVRLASVQLAFQGVFIEPGALPQRVL
RVQTQSYPLTASGSAVRKEADANSVTTLLFHKAVAAADEQSITAARMLLF
DWLAILFSRTAKTPPDGDAPVVDAKLTRYPALQPIPRLIFGLVRSSLFRQ
DAVDPDARAALRCVWEDLSPELLAAAAYPRLYSFLSLQEKSNRELPLSLA
AVKESGHPIFLLDAFSDIVIYYAATSNRKDLPYPPPDSSTVMRVRGQCTR
DRPIAPKCVTCREGTPKDGWFKSFLIEDTLPGAGAQSFSAFLLGVVDAAE
DILRSVRK*
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mRNA from alignment at tig00000073_pilon:84709..86835-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7834.t1 ID=Ggra7834.t1|Name=Ggra7834.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2127bp|location=Sequence derived from alignment at tig00000073_pilon:84709..86835- (Gracilaria gracilis GNS1m male)
ATGCTACGTCCGACCAGTCGGCGCGTCCCCACGAGCGCCGCCGTGCAGGC
GCGCGCCGCTCTGCCGTGCGGCGTTTTGGTCACCCCGCTCGCGCCTTCGC
CCCCGCCCAGGTCCGTCTTGGCGTATGAAGCTTCCTTGCCGCCCGCCGCT
TTGCAGTCGTATAAGGCGGCTGCCGCTACTACTTCGGCTGCTATTCCGAG
ATGTTCCGAATGTCGTGCGTATGTTGCTACCGTTTGTAGCATGAATGCGC
GCTATTGGCGCTGTGCCATTTGTTCCGCTTCCAATGTATTGCCGCAGCGC
TATTCGCCCGTGCTGCTCGCGGAGCCCGAGGCTTTGCATATTGTGCCGGA
GCTTTCGAGGGATATCTATGATCTGCCTGTGGACAATATCATCACCCCGT
CGCCTACCGCTTATGTGTTCATTGTGGATGCCAATGGCTCGCACATGTTT
CTGGATGCCGTCAGGCAGGCCATTCGTCAATCGTTGTTGTCCTTGGATGC
TTTGTCCACGGTCGGTATCATCTTGTACGACGAGAACGTCACTCTTTTCG
ATCTTCGTGCAAACCTTCTTCGCTCGCTCTCATCGCAGGATGCCGATGTT
AATGCGTCGCACGTCTTCCCTCCAGATCAGTGGCTGCGTCAGACCAGCCC
TGACGTCATCGACACCATTGTTTCAATGCTGGGCAAGCTCAGACCGCCTT
CTCCACCCGACTCTACCACACCGCCCAAGAGTGCCCTGGGTGCTGCGGTT
ACGGCCGCTCTCGATATGATTGAGAGCGCTCAGCTACTTGCCTCGCGCAT
CGTCGTCATGGCTACAACCGAACCCAACTTGGGTGAAGGTGCCGTTCAAT
ATCCATCCGAACCAGATGACCGCCAACCAGATGTGCCATCCACAGCGCTC
TCGACGTTCTATGAACAGGCTGGCTTGCGTGCTAATTTGCTCGGCGCCAT
GTTTGACGTGTACTTCTCATGTACCACTTCTGTGCATGTTGCTACTCTTT
CGCCGCTGGCGCAGATCAGCGGTGGCAGATTCATTCTGTATGATTCAGGG
GAAGAGAGTCTGGCGAAAGATGTCTGGCAACACCTCAATGACCCGGCTGT
CGTTCGAGGCCTCTTGCGCGTCAGAACCAGTTCTAACATAGACGTTGCTG
ATGTTTACGGATGTGGCGTATATCAAGATAGTCAAGTGCCAGAGGTGTAT
CGCTTGAATTGCCATGGCCATACTTCTACCTTGGCGGTCGAGTTCCGGGT
CAAGGAGCAAGCTCCTCCTCCAACTGTACGACTTGCTAGCGTACAGCTTG
CTTTTCAAGGCGTTTTCATTGAACCGGGTGCGCTTCCGCAAAGGGTTCTC
CGCGTTCAGACTCAATCTTACCCACTCACGGCGTCAGGCTCGGCTGTGAG
AAAAGAGGCCGACGCGAATTCTGTGACCACGCTGCTGTTCCACAAGGCGG
TCGCGGCCGCAGATGAGCAAAGCATCACCGCGGCGCGAATGCTGCTCTTC
GACTGGTTGGCTATCCTGTTCTCGAGGACAGCCAAAACTCCCCCAGATGG
AGATGCTCCGGTGGTTGATGCCAAGCTGACAAGATATCCCGCACTGCAAC
CAATCCCACGCCTTATCTTTGGGCTTGTTCGCAGCTCTCTTTTCCGCCAG
GATGCTGTTGATCCGGATGCTCGAGCCGCTTTGCGCTGCGTTTGGGAGGA
TTTGAGTCCTGAGCTGCTTGCGGCCGCGGCTTACCCGCGCTTGTATTCAT
TCTTGAGCCTGCAAGAAAAGAGCAATCGGGAATTGCCGTTGTCGTTAGCT
GCTGTCAAAGAGAGCGGCCATCCGATATTCTTGCTCGATGCGTTTTCCGA
TATTGTTATCTACTATGCTGCAACGTCGAATAGGAAAGACCTACCGTATC
CCCCTCCGGATTCTAGTACAGTAATGCGTGTACGTGGACAATGTACTAGG
GACAGACCTATCGCACCAAAGTGCGTCACTTGTCGCGAAGGCACTCCGAA
AGATGGATGGTTTAAGTCTTTCCTCATTGAGGATACTCTTCCAGGAGCAG
GCGCTCAATCGTTTTCTGCTTTCCTGTTAGGTGTTGTGGATGCTGCTGAG
GATATTTTACGAAGCGTTAGAAAGTAA
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Coding sequence (CDS) from alignment at tig00000073_pilon:84709..86835-

>Ggra7834.t1 ID=Ggra7834.t1|Name=Ggra7834.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2127bp|location=Sequence derived from alignment at tig00000073_pilon:84709..86835- (Gracilaria gracilis GNS1m male)
ATGCTACGTCCGACCAGTCGGCGCGTCCCCACGAGCGCCGCCGTGCAGGC
GCGCGCCGCTCTGCCGTGCGGCGTTTTGGTCACCCCGCTCGCGCCTTCGC
CCCCGCCCAGGTCCGTCTTGGCGTATGAAGCTTCCTTGCCGCCCGCCGCT
TTGCAGTCGTATAAGGCGGCTGCCGCTACTACTTCGGCTGCTATTCCGAG
ATGTTCCGAATGTCGTGCGTATGTTGCTACCGTTTGTAGCATGAATGCGC
GCTATTGGCGCTGTGCCATTTGTTCCGCTTCCAATGTATTGCCGCAGCGC
TATTCGCCCGTGCTGCTCGCGGAGCCCGAGGCTTTGCATATTGTGCCGGA
GCTTTCGAGGGATATCTATGATCTGCCTGTGGACAATATCATCACCCCGT
CGCCTACCGCTTATGTGTTCATTGTGGATGCCAATGGCTCGCACATGTTT
CTGGATGCCGTCAGGCAGGCCATTCGTCAATCGTTGTTGTCCTTGGATGC
TTTGTCCACGGTCGGTATCATCTTGTACGACGAGAACGTCACTCTTTTCG
ATCTTCGTGCAAACCTTCTTCGCTCGCTCTCATCGCAGGATGCCGATGTT
AATGCGTCGCACGTCTTCCCTCCAGATCAGTGGCTGCGTCAGACCAGCCC
TGACGTCATCGACACCATTGTTTCAATGCTGGGCAAGCTCAGACCGCCTT
CTCCACCCGACTCTACCACACCGCCCAAGAGTGCCCTGGGTGCTGCGGTT
ACGGCCGCTCTCGATATGATTGAGAGCGCTCAGCTACTTGCCTCGCGCAT
CGTCGTCATGGCTACAACCGAACCCAACTTGGGTGAAGGTGCCGTTCAAT
ATCCATCCGAACCAGATGACCGCCAACCAGATGTGCCATCCACAGCGCTC
TCGACGTTCTATGAACAGGCTGGCTTGCGTGCTAATTTGCTCGGCGCCAT
GTTTGACGTGTACTTCTCATGTACCACTTCTGTGCATGTTGCTACTCTTT
CGCCGCTGGCGCAGATCAGCGGTGGCAGATTCATTCTGTATGATTCAGGG
GAAGAGAGTCTGGCGAAAGATGTCTGGCAACACCTCAATGACCCGGCTGT
CGTTCGAGGCCTCTTGCGCGTCAGAACCAGTTCTAACATAGACGTTGCTG
ATGTTTACGGATGTGGCGTATATCAAGATAGTCAAGTGCCAGAGGTGTAT
CGCTTGAATTGCCATGGCCATACTTCTACCTTGGCGGTCGAGTTCCGGGT
CAAGGAGCAAGCTCCTCCTCCAACTGTACGACTTGCTAGCGTACAGCTTG
CTTTTCAAGGCGTTTTCATTGAACCGGGTGCGCTTCCGCAAAGGGTTCTC
CGCGTTCAGACTCAATCTTACCCACTCACGGCGTCAGGCTCGGCTGTGAG
AAAAGAGGCCGACGCGAATTCTGTGACCACGCTGCTGTTCCACAAGGCGG
TCGCGGCCGCAGATGAGCAAAGCATCACCGCGGCGCGAATGCTGCTCTTC
GACTGGTTGGCTATCCTGTTCTCGAGGACAGCCAAAACTCCCCCAGATGG
AGATGCTCCGGTGGTTGATGCCAAGCTGACAAGATATCCCGCACTGCAAC
CAATCCCACGCCTTATCTTTGGGCTTGTTCGCAGCTCTCTTTTCCGCCAG
GATGCTGTTGATCCGGATGCTCGAGCCGCTTTGCGCTGCGTTTGGGAGGA
TTTGAGTCCTGAGCTGCTTGCGGCCGCGGCTTACCCGCGCTTGTATTCAT
TCTTGAGCCTGCAAGAAAAGAGCAATCGGGAATTGCCGTTGTCGTTAGCT
GCTGTCAAAGAGAGCGGCCATCCGATATTCTTGCTCGATGCGTTTTCCGA
TATTGTTATCTACTATGCTGCAACGTCGAATAGGAAAGACCTACCGTATC
CCCCTCCGGATTCTAGTACAGTAATGCGTGTACGTGGACAATGTACTAGG
GACAGACCTATCGCACCAAAGTGCGTCACTTGTCGCGAAGGCACTCCGAA
AGATGGATGGTTTAAGTCTTTCCTCATTGAGGATACTCTTCCAGGAGCAG
GCGCTCAATCGTTTTCTGCTTTCCTGTTAGGTGTTGTGGATGCTGCTGAG
GATATTTTACGAAGCGTTAGAAAGTAA
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