Ggra7830.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7830.t1
Unique NameGgra7830.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length578
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:71332..73065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4577.GRMZM2G025854_P03
PFAMsPGM_PMM_I,PGM_PMM_II,PGM_PMM_III,PGM_PMM_IV
Max annot lvl35493|Streptophyta
KEGG rclassRC00408
KEGG koko:K01835
KEGG ReactionR00959,R01057,R08639
KEGG Pathwayko00010,ko00030,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130
KEGG ModuleM00549
GOsGO:0000271,GO:0003674,GO:0003824,GO:0004614,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0005982,GO:0005996,GO:0006006,GO:0006012,GO:0006073,GO:0006091,GO:0006112,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009059,GO:0009250,GO:0009266,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009581,GO:0009582,GO:0009590,GO:0009605,GO:0009628,GO:0009629,GO:0009941,GO:0009987,GO:0010319,GO:0015980,GO:0016051,GO:0016052,GO:0016853,GO:0016866,GO:0016868,GO:0019252,GO:0019318,GO:0019320,GO:0019388,GO:0031967,GO:0031975,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046365,GO:0048046,GO:0050896,GO:0051606,GO:0055114,GO:0071704,GO:1901575,GO:1901576
Evalue3.14e-200
EggNOG OGsCOG0033@1|root,KOG0625@2759|Eukaryota,37R89@33090|Viridiplantae,3GETM@35493|Streptophyta,3KX9J@4447|Liliopsida,3I7I4@38820|Poales
EC5.4.2.2
DescriptionPhosphoglucomutase/phosphomannomutase, C-terminal domain
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7830Ggra7830Gracilaria gracilis GNS1m malegenetig00000073_pilon 71332..73065 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7830.t1.start1Ggra7830.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 71332..71334 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7830.t1.CDS1Ggra7830.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 71332..73065 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7830.t1.exon1Ggra7830.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 71332..73065 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7830.t1.stop1Ggra7830.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 73063..73065 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7830.t1Ggra7830.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 71332..73065 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7830.t1 ID=Ggra7830.t1|Name=Ggra7830.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=578bp
MCQPSETPASVLSPELPILTYDTKPISGQTTGTSGMRKKTSVLVSDPSFL
PNWVQSLFDALGGPSVLSGRTLVLGGDGRFYNKSAAQTILRMAAANGFAR
VVVGRNALLTTPAVSALIPSCEALGGIILTASHNPAGPDGDWGIKYNTES
GAPALKGLTDLIYEHTQKISQYKLADFGSDIDLSTEGVTSFTDGKFVVEV
INPVDHYLTMLQSIFDFDALKTLVARPDFSMCFDAMHASTGEYARVIFGI
ELGAGFRSIINADPKEDFGGGHPDPNLTYAAELVEALNPEKNPEAPQFGA
ASDGDGDRNMILGRGVFVSPADSVAIIADYATKAIPYFGRQGLKGVARSM
PTASALDRVAEEKGVQLYYTPTGWKYFTNLMDAGKINICGEESFGTSSDH
IREKDGIWAVLAWLSILALENRDTAVGQFVTVEDILLSHWKKYGRTYNLR
HDYEAVDSNDADMFMLNLKGMAHGIVPFLDEVRRVQEFEYKDPVDGSTET
NQGIIVEMKSGGRAVFRLSGTGSAGATIRIYYELYESPSPDMENKDPKVV
MESIVDLVGKLTRIEEFSGRSAPTVIT*
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spliced messenger RNA

>Ggra7830.t1 ID=Ggra7830.t1|Name=Ggra7830.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1734bp|location=Sequence derived from alignment at tig00000073_pilon:71332..73065+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCCAACCTTCAGAAACACCAGCCTCTGTTCTATCTCCGGAATTACC
AATACTTACGTACGATACGAAGCCTATATCTGGACAGACTACCGGAACTA
GCGGTATGCGCAAGAAGACGTCCGTGCTAGTATCTGATCCATCGTTTTTG
CCGAATTGGGTTCAGTCTCTGTTCGATGCTCTTGGTGGCCCATCTGTGCT
TTCTGGGCGCACGCTTGTACTCGGAGGTGATGGTCGTTTTTACAACAAGA
GCGCTGCACAAACTATTTTACGCATGGCTGCTGCGAATGGTTTTGCTCGC
GTTGTCGTCGGCAGAAATGCACTGCTCACGACCCCAGCTGTATCTGCTCT
GATTCCTAGTTGCGAGGCGCTTGGTGGTATCATCCTCACAGCAAGTCACA
ATCCAGCCGGACCAGATGGCGACTGGGGGATAAAGTACAACACTGAATCC
GGGGCACCAGCGTTGAAGGGGTTAACAGACTTAATCTATGAACATACTCA
GAAGATTTCTCAGTACAAGCTTGCAGATTTCGGGTCTGATATAGATTTAT
CGACCGAAGGTGTCACGTCCTTTACGGACGGGAAGTTTGTGGTCGAAGTG
ATTAATCCAGTGGACCACTACTTGACGATGCTGCAGTCGATATTTGACTT
TGATGCTCTGAAAACGCTGGTTGCTCGTCCAGACTTTTCTATGTGCTTTG
ACGCTATGCATGCGTCAACTGGAGAATACGCTCGGGTTATATTTGGAATT
GAGCTGGGAGCGGGTTTTCGATCCATCATAAACGCCGATCCAAAGGAGGA
CTTCGGCGGAGGACATCCTGATCCCAACCTAACTTATGCGGCGGAACTTG
TAGAGGCCTTGAACCCTGAGAAGAACCCCGAGGCGCCTCAGTTTGGTGCT
GCTTCTGACGGCGATGGTGACCGGAACATGATTCTTGGTCGAGGGGTATT
CGTTAGTCCAGCTGATTCGGTTGCTATTATCGCTGACTACGCAACTAAGG
CTATTCCATATTTTGGCCGGCAAGGACTTAAAGGAGTGGCCCGCTCCATG
CCGACTGCGTCGGCGTTAGATAGAGTGGCGGAGGAGAAGGGGGTACAGTT
GTACTATACCCCCACCGGATGGAAGTACTTTACAAATTTAATGGACGCTG
GAAAGATCAACATATGCGGAGAAGAGTCGTTTGGGACAAGCTCCGATCAC
ATACGGGAAAAAGACGGTATATGGGCTGTCCTAGCTTGGTTAAGCATCTT
AGCTCTTGAAAACCGAGATACAGCAGTGGGACAATTTGTTACGGTGGAAG
ATATACTTCTAAGCCACTGGAAAAAGTACGGGCGTACGTACAACTTGCGA
CATGATTATGAGGCCGTAGATTCAAATGATGCGGACATGTTCATGCTCAA
CCTGAAGGGAATGGCACATGGGATAGTTCCCTTCCTTGACGAGGTACGGA
GAGTTCAGGAGTTTGAGTACAAAGATCCCGTTGATGGTTCAACGGAAACA
AATCAAGGCATCATTGTAGAAATGAAGAGCGGTGGTCGTGCCGTGTTCCG
ATTGAGCGGCACAGGATCGGCCGGTGCCACGATTCGAATATACTATGAGT
TGTACGAATCGCCGTCGCCGGATATGGAAAACAAAGACCCAAAGGTTGTG
ATGGAGAGCATCGTAGATCTCGTTGGTAAGCTTACAAGAATTGAAGAGTT
CAGCGGTCGAAGCGCCCCGACAGTGATAACATAA
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protein sequence of Ggra7830.t1

>Ggra7830.t1 ID=Ggra7830.t1|Name=Ggra7830.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=578bp
MCQPSETPASVLSPELPILTYDTKPISGQTTGTSGMRKKTSVLVSDPSFL
PNWVQSLFDALGGPSVLSGRTLVLGGDGRFYNKSAAQTILRMAAANGFAR
VVVGRNALLTTPAVSALIPSCEALGGIILTASHNPAGPDGDWGIKYNTES
GAPALKGLTDLIYEHTQKISQYKLADFGSDIDLSTEGVTSFTDGKFVVEV
INPVDHYLTMLQSIFDFDALKTLVARPDFSMCFDAMHASTGEYARVIFGI
ELGAGFRSIINADPKEDFGGGHPDPNLTYAAELVEALNPEKNPEAPQFGA
ASDGDGDRNMILGRGVFVSPADSVAIIADYATKAIPYFGRQGLKGVARSM
PTASALDRVAEEKGVQLYYTPTGWKYFTNLMDAGKINICGEESFGTSSDH
IREKDGIWAVLAWLSILALENRDTAVGQFVTVEDILLSHWKKYGRTYNLR
HDYEAVDSNDADMFMLNLKGMAHGIVPFLDEVRRVQEFEYKDPVDGSTET
NQGIIVEMKSGGRAVFRLSGTGSAGATIRIYYELYESPSPDMENKDPKVV
MESIVDLVGKLTRIEEFSGRSAPTVIT*
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mRNA from alignment at tig00000073_pilon:71332..73065+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7830.t1 ID=Ggra7830.t1|Name=Ggra7830.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1734bp|location=Sequence derived from alignment at tig00000073_pilon:71332..73065+ (Gracilaria gracilis GNS1m male)
ATGTGCCAACCTTCAGAAACACCAGCCTCTGTTCTATCTCCGGAATTACC
AATACTTACGTACGATACGAAGCCTATATCTGGACAGACTACCGGAACTA
GCGGTATGCGCAAGAAGACGTCCGTGCTAGTATCTGATCCATCGTTTTTG
CCGAATTGGGTTCAGTCTCTGTTCGATGCTCTTGGTGGCCCATCTGTGCT
TTCTGGGCGCACGCTTGTACTCGGAGGTGATGGTCGTTTTTACAACAAGA
GCGCTGCACAAACTATTTTACGCATGGCTGCTGCGAATGGTTTTGCTCGC
GTTGTCGTCGGCAGAAATGCACTGCTCACGACCCCAGCTGTATCTGCTCT
GATTCCTAGTTGCGAGGCGCTTGGTGGTATCATCCTCACAGCAAGTCACA
ATCCAGCCGGACCAGATGGCGACTGGGGGATAAAGTACAACACTGAATCC
GGGGCACCAGCGTTGAAGGGGTTAACAGACTTAATCTATGAACATACTCA
GAAGATTTCTCAGTACAAGCTTGCAGATTTCGGGTCTGATATAGATTTAT
CGACCGAAGGTGTCACGTCCTTTACGGACGGGAAGTTTGTGGTCGAAGTG
ATTAATCCAGTGGACCACTACTTGACGATGCTGCAGTCGATATTTGACTT
TGATGCTCTGAAAACGCTGGTTGCTCGTCCAGACTTTTCTATGTGCTTTG
ACGCTATGCATGCGTCAACTGGAGAATACGCTCGGGTTATATTTGGAATT
GAGCTGGGAGCGGGTTTTCGATCCATCATAAACGCCGATCCAAAGGAGGA
CTTCGGCGGAGGACATCCTGATCCCAACCTAACTTATGCGGCGGAACTTG
TAGAGGCCTTGAACCCTGAGAAGAACCCCGAGGCGCCTCAGTTTGGTGCT
GCTTCTGACGGCGATGGTGACCGGAACATGATTCTTGGTCGAGGGGTATT
CGTTAGTCCAGCTGATTCGGTTGCTATTATCGCTGACTACGCAACTAAGG
CTATTCCATATTTTGGCCGGCAAGGACTTAAAGGAGTGGCCCGCTCCATG
CCGACTGCGTCGGCGTTAGATAGAGTGGCGGAGGAGAAGGGGGTACAGTT
GTACTATACCCCCACCGGATGGAAGTACTTTACAAATTTAATGGACGCTG
GAAAGATCAACATATGCGGAGAAGAGTCGTTTGGGACAAGCTCCGATCAC
ATACGGGAAAAAGACGGTATATGGGCTGTCCTAGCTTGGTTAAGCATCTT
AGCTCTTGAAAACCGAGATACAGCAGTGGGACAATTTGTTACGGTGGAAG
ATATACTTCTAAGCCACTGGAAAAAGTACGGGCGTACGTACAACTTGCGA
CATGATTATGAGGCCGTAGATTCAAATGATGCGGACATGTTCATGCTCAA
CCTGAAGGGAATGGCACATGGGATAGTTCCCTTCCTTGACGAGGTACGGA
GAGTTCAGGAGTTTGAGTACAAAGATCCCGTTGATGGTTCAACGGAAACA
AATCAAGGCATCATTGTAGAAATGAAGAGCGGTGGTCGTGCCGTGTTCCG
ATTGAGCGGCACAGGATCGGCCGGTGCCACGATTCGAATATACTATGAGT
TGTACGAATCGCCGTCGCCGGATATGGAAAACAAAGACCCAAAGGTTGTG
ATGGAGAGCATCGTAGATCTCGTTGGTAAGCTTACAAGAATTGAAGAGTT
CAGCGGTCGAAGCGCCCCGACAGTGATAACATAA
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Coding sequence (CDS) from alignment at tig00000073_pilon:71332..73065+

>Ggra7830.t1 ID=Ggra7830.t1|Name=Ggra7830.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1734bp|location=Sequence derived from alignment at tig00000073_pilon:71332..73065+ (Gracilaria gracilis GNS1m male)
ATGTGCCAACCTTCAGAAACACCAGCCTCTGTTCTATCTCCGGAATTACC
AATACTTACGTACGATACGAAGCCTATATCTGGACAGACTACCGGAACTA
GCGGTATGCGCAAGAAGACGTCCGTGCTAGTATCTGATCCATCGTTTTTG
CCGAATTGGGTTCAGTCTCTGTTCGATGCTCTTGGTGGCCCATCTGTGCT
TTCTGGGCGCACGCTTGTACTCGGAGGTGATGGTCGTTTTTACAACAAGA
GCGCTGCACAAACTATTTTACGCATGGCTGCTGCGAATGGTTTTGCTCGC
GTTGTCGTCGGCAGAAATGCACTGCTCACGACCCCAGCTGTATCTGCTCT
GATTCCTAGTTGCGAGGCGCTTGGTGGTATCATCCTCACAGCAAGTCACA
ATCCAGCCGGACCAGATGGCGACTGGGGGATAAAGTACAACACTGAATCC
GGGGCACCAGCGTTGAAGGGGTTAACAGACTTAATCTATGAACATACTCA
GAAGATTTCTCAGTACAAGCTTGCAGATTTCGGGTCTGATATAGATTTAT
CGACCGAAGGTGTCACGTCCTTTACGGACGGGAAGTTTGTGGTCGAAGTG
ATTAATCCAGTGGACCACTACTTGACGATGCTGCAGTCGATATTTGACTT
TGATGCTCTGAAAACGCTGGTTGCTCGTCCAGACTTTTCTATGTGCTTTG
ACGCTATGCATGCGTCAACTGGAGAATACGCTCGGGTTATATTTGGAATT
GAGCTGGGAGCGGGTTTTCGATCCATCATAAACGCCGATCCAAAGGAGGA
CTTCGGCGGAGGACATCCTGATCCCAACCTAACTTATGCGGCGGAACTTG
TAGAGGCCTTGAACCCTGAGAAGAACCCCGAGGCGCCTCAGTTTGGTGCT
GCTTCTGACGGCGATGGTGACCGGAACATGATTCTTGGTCGAGGGGTATT
CGTTAGTCCAGCTGATTCGGTTGCTATTATCGCTGACTACGCAACTAAGG
CTATTCCATATTTTGGCCGGCAAGGACTTAAAGGAGTGGCCCGCTCCATG
CCGACTGCGTCGGCGTTAGATAGAGTGGCGGAGGAGAAGGGGGTACAGTT
GTACTATACCCCCACCGGATGGAAGTACTTTACAAATTTAATGGACGCTG
GAAAGATCAACATATGCGGAGAAGAGTCGTTTGGGACAAGCTCCGATCAC
ATACGGGAAAAAGACGGTATATGGGCTGTCCTAGCTTGGTTAAGCATCTT
AGCTCTTGAAAACCGAGATACAGCAGTGGGACAATTTGTTACGGTGGAAG
ATATACTTCTAAGCCACTGGAAAAAGTACGGGCGTACGTACAACTTGCGA
CATGATTATGAGGCCGTAGATTCAAATGATGCGGACATGTTCATGCTCAA
CCTGAAGGGAATGGCACATGGGATAGTTCCCTTCCTTGACGAGGTACGGA
GAGTTCAGGAGTTTGAGTACAAAGATCCCGTTGATGGTTCAACGGAAACA
AATCAAGGCATCATTGTAGAAATGAAGAGCGGTGGTCGTGCCGTGTTCCG
ATTGAGCGGCACAGGATCGGCCGGTGCCACGATTCGAATATACTATGAGT
TGTACGAATCGCCGTCGCCGGATATGGAAAACAAAGACCCAAAGGTTGTG
ATGGAGAGCATCGTAGATCTCGTTGGTAAGCTTACAAGAATTGAAGAGTT
CAGCGGTCGAAGCGCCCCGACAGTGATAACATAA
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