Ggra7827.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7827.t1
Unique NameGgra7827.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length377
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:49891..51278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706350.1
Preferred nameDXO
PFAMsRAI1
Max annot lvl2759|Eukaryota
KEGG koko:K14845,ko:K18404
GOsGO:0000003,GO:0000166,GO:0000287,GO:0000291,GO:0000448,GO:0000460,GO:0000463,GO:0000466,GO:0000469,GO:0000470,GO:0000478,GO:0000479,GO:0000578,GO:0000956,GO:0001882,GO:0001883,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004527,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006351,GO:0006353,GO:0006364,GO:0006366,GO:0006369,GO:0006396,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006996,GO:0007028,GO:0007049,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007293,GO:0007308,GO:0007309,GO:0007314,GO:0007315,GO:0007350,GO:0007351,GO:0007389,GO:0008150,GO:0008152,GO:0008283,GO:0008358,GO:0008409,GO:0008595,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009653,GO:0009790,GO:0009798,GO:0009880,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009948,GO:0009952,GO:0009953,GO:0009987,GO:0009994,GO:0010033,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016075,GO:0016246,GO:0016441,GO:0016458,GO:0016462,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0016891,GO:0016893,GO:0017076,GO:0018130,GO:0019001,GO:0019003,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0019953,GO:0021700,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0030154,GO:0030234,GO:0030422,GO:0030717,GO:0030719,GO:0030723,GO:0030727,GO:0030846,GO:0031047,GO:0031050,GO:0031086,GO:0031087,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031644,GO:0032501,GO:0032502,GO:0032504,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032774,GO:0032991,GO:0034353,GO:0034428,GO:0034470,GO:0034587,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0034661,GO:0035194,GO:0035282,GO:0036094,GO:0040029,GO:0042221,GO:0042254,GO:0042273,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043331,GO:0043487,GO:0043632,GO:0043633,GO:0043634,GO:0043933,GO:0044057,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0044703,GO:0045478,GO:0045935,GO:0046483,GO:0046700,GO:0046872,GO:0048134,GO:0048135,GO:0048468,GO:0048469,GO:0048471,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048599,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050779,GO:0050789,GO:0050790,GO:0050794,GO:0050795,GO:0050896,GO:0051171,GO:0051173,GO:0051239,GO:0051252,GO:0051254,GO:0051276,GO:0051321,GO:0051704,GO:0051716,GO:0060255,GO:0061695,GO:0061982,GO:0061988,GO:0065007,GO:0065008,GO:0065009,GO:0070192,GO:0070887,GO:0070918,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071035,GO:0071046,GO:0071310,GO:0071359,GO:0071407,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0090305,GO:0090328,GO:0090501,GO:0090502,GO:0090730,GO:0097159,GO:0097367,GO:0097659,GO:0098772,GO:0140098,GO:1901265,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1901698,GO:1901699,GO:1902494,GO:1902555,GO:1902911,GO:1903046,GO:1905348,GO:1905354,GO:1990174,GO:1990234
Evalue4.88e-50
EggNOG OGsKOG1982@1|root,KOG1982@2759|Eukaryota
Descriptiondecapping
COG categoryK
BRITEko00000,ko03009,ko03019,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7827Ggra7827Gracilaria gracilis GNS1m malegenetig00000073_pilon 49891..51278 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7827.t1Ggra7827.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 49891..51278 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7827.t1.start1Ggra7827.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 49891..49893 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7827.t1.CDS1Ggra7827.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 49891..50894 +
Ggra7827.t1.CDS2Ggra7827.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000073_pilon 50971..51016 +
Ggra7827.t1.CDS3Ggra7827.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000073_pilon 51198..51278 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7827.t1.exon1Ggra7827.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 49891..50894 +
Ggra7827.t1.exon2Ggra7827.t1.exon2Gracilaria gracilis GNS1m maleexontig00000073_pilon 50971..51016 +
Ggra7827.t1.exon3Ggra7827.t1.exon3Gracilaria gracilis GNS1m maleexontig00000073_pilon 51198..51278 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7827.t1.intron1Ggra7827.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000073_pilon 50895..50970 +
Ggra7827.t1.intron2Ggra7827.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000073_pilon 51017..51197 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7827.t1.stop1Ggra7827.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 51276..51278 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7827.t1 ID=Ggra7827.t1|Name=Ggra7827.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=377bp
MDRSDSEVPRSAIPGESNATIHVDVKRWVGSAASKVTKLHISEPREVAFF
SRAADRHIQHGSRAELKRYKEPTPNVNLGEQFESFVPKADEIATVDTVVE
AVEDGDFNLYEEADVVTFRNNLNKIAGTPYNHRDDWEMDCAMVGNVVFLD
IRKLDDNNRNPSAARFMYYGYRFEALCTGNEDEPVNANSEFCSISRLRIG
NHRIVLSAEIDCTMGDPKSVDNPIRSYLELKTMREVRSDRDLGNMYRHRF
PKYWVQSYLAGVRYIFLGLRSDDGELLGVKRLETHKLHREARQYFQERNL
SGCWEPFVCLNFIDFLLHAIRRACGKRNGSTLRLSRSARDEFQNGYKVRC
HNGALQGFVCLKCGVRIEMRAEKDTI*
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spliced messenger RNA

>Ggra7827.t1 ID=Ggra7827.t1|Name=Ggra7827.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1131bp|location=Sequence derived from alignment at tig00000073_pilon:49891..51278+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCGCTCCGACTCCGAAGTCCCCCGGTCCGCAATACCTGGGGAAAG
CAATGCGACAATTCACGTAGATGTCAAACGCTGGGTTGGCTCTGCCGCCT
CAAAAGTTACAAAGCTTCATATCTCTGAGCCCCGGGAAGTGGCTTTCTTC
TCGAGAGCTGCAGATCGGCATATACAGCACGGAAGTAGAGCAGAACTTAA
GAGATACAAAGAACCAACCCCGAATGTCAATCTGGGAGAACAGTTCGAAA
GCTTCGTTCCCAAAGCAGATGAGATCGCGACCGTTGACACTGTCGTGGAA
GCGGTGGAAGACGGCGATTTCAATCTCTACGAAGAAGCAGATGTTGTAAC
CTTTCGTAATAACCTGAACAAAATCGCGGGAACTCCGTACAATCATCGAG
ATGATTGGGAAATGGATTGCGCGATGGTCGGAAACGTTGTATTTCTCGAC
ATAAGAAAGTTAGATGACAATAACAGGAACCCATCAGCGGCCCGTTTCAT
GTACTACGGGTACCGTTTTGAAGCACTCTGTACGGGGAATGAAGATGAAC
CTGTGAACGCGAATTCAGAATTCTGCAGCATTTCTCGCCTGCGTATTGGG
AATCATCGAATCGTGCTGAGCGCAGAAATTGATTGTACCATGGGAGACCC
CAAGAGCGTCGACAATCCGATACGTAGTTATTTGGAGCTCAAGACGATGC
GTGAAGTGCGGAGTGATAGAGATTTAGGCAATATGTACAGACATCGGTTC
CCAAAGTATTGGGTTCAGTCTTACTTGGCTGGCGTACGGTACATATTTCT
AGGCCTTCGGAGCGATGATGGGGAGCTTCTCGGTGTGAAACGCCTCGAGA
CCCACAAACTTCATCGAGAAGCGCGCCAGTATTTTCAAGAAAGGAATTTG
TCTGGGTGCTGGGAACCGTTTGTATGTCTCAATTTCATCGACTTCCTACT
TCACGCCATTCGCCGTGCTTGCGGAAAGCGAAATGGTTCTACACTCCGAT
TAAGTCGAAGTGCAAGGGATGAGTTCCAGAACGGGTACAAAGTAAGATGT
CATAATGGAGCTCTTCAGGGTTTCGTCTGTCTCAAGTGCGGTGTCAGAAT
AGAGATGCGTGCGGAAAAGGACACGATCTGA
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protein sequence of Ggra7827.t1

>Ggra7827.t1 ID=Ggra7827.t1|Name=Ggra7827.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=377bp
MDRSDSEVPRSAIPGESNATIHVDVKRWVGSAASKVTKLHISEPREVAFF
SRAADRHIQHGSRAELKRYKEPTPNVNLGEQFESFVPKADEIATVDTVVE
AVEDGDFNLYEEADVVTFRNNLNKIAGTPYNHRDDWEMDCAMVGNVVFLD
IRKLDDNNRNPSAARFMYYGYRFEALCTGNEDEPVNANSEFCSISRLRIG
NHRIVLSAEIDCTMGDPKSVDNPIRSYLELKTMREVRSDRDLGNMYRHRF
PKYWVQSYLAGVRYIFLGLRSDDGELLGVKRLETHKLHREARQYFQERNL
SGCWEPFVCLNFIDFLLHAIRRACGKRNGSTLRLSRSARDEFQNGYKVRC
HNGALQGFVCLKCGVRIEMRAEKDTI*
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mRNA from alignment at tig00000073_pilon:49891..51278+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7827.t1 ID=Ggra7827.t1|Name=Ggra7827.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1388bp|location=Sequence derived from alignment at tig00000073_pilon:49891..51278+ (Gracilaria gracilis GNS1m male)
ATGGATCGCTCCGACTCCGAAGTCCCCCGGTCCGCAATACCTGGGGAAAG
CAATGCGACAATTCACGTAGATGTCAAACGCTGGGTTGGCTCTGCCGCCT
CAAAAGTTACAAAGCTTCATATCTCTGAGCCCCGGGAAGTGGCTTTCTTC
TCGAGAGCTGCAGATCGGCATATACAGCACGGAAGTAGAGCAGAACTTAA
GAGATACAAAGAACCAACCCCGAATGTCAATCTGGGAGAACAGTTCGAAA
GCTTCGTTCCCAAAGCAGATGAGATCGCGACCGTTGACACTGTCGTGGAA
GCGGTGGAAGACGGCGATTTCAATCTCTACGAAGAAGCAGATGTTGTAAC
CTTTCGTAATAACCTGAACAAAATCGCGGGAACTCCGTACAATCATCGAG
ATGATTGGGAAATGGATTGCGCGATGGTCGGAAACGTTGTATTTCTCGAC
ATAAGAAAGTTAGATGACAATAACAGGAACCCATCAGCGGCCCGTTTCAT
GTACTACGGGTACCGTTTTGAAGCACTCTGTACGGGGAATGAAGATGAAC
CTGTGAACGCGAATTCAGAATTCTGCAGCATTTCTCGCCTGCGTATTGGG
AATCATCGAATCGTGCTGAGCGCAGAAATTGATTGTACCATGGGAGACCC
CAAGAGCGTCGACAATCCGATACGTAGTTATTTGGAGCTCAAGACGATGC
GTGAAGTGCGGAGTGATAGAGATTTAGGCAATATGTACAGACATCGGTTC
CCAAAGTATTGGGTTCAGTCTTACTTGGCTGGCGTACGGTACATATTTCT
AGGCCTTCGGAGCGATGATGGGGAGCTTCTCGGTGTGAAACGCCTCGAGA
CCCACAAACTTCATCGAGAAGCGCGCCAGTATTTTCAAGAAAGGAATTTG
TCTGGGTGCTGGGAACCGTTTGTATGTCTCAATTTCATCGACTTCCTACT
TCACGCCATTCGCCGTGCTTGCGGAAAGCGAAATGGTTCTACACTCCGAT
TAAGGTACAGAGCACGTGAAGGGGTGATTGAGGGGAACTTCCTTCCCGAT
AATGACGGCCTCGTTGGAACCCGAATGAAGTCGAAGTGCAAGGGATGAGT
TCCAGAACGGGTACAAAGTAAGATGTGTATGTTCGTATGAAACTCAAAGC
GCTTTCTTCCTACAAAATCACAGGCAGCAAATAAGCATTACACCATGCGC
CGAAGTTTTGAGCGGCTTGACCAAAGCATTTTGCGAACGTAGGACACTTG
ACTTACTGCTGCCAAGAGCGCTGCAACACATTCCAGAGCCACTAACCGAC
CAGTCAGCATAATGGAGCTCTTCAGGGTTTCGTCTGTCTCAAGTGCGGTG
TCAGAATAGAGATGCGTGCGGAAAAGGACACGATCTGA
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Coding sequence (CDS) from alignment at tig00000073_pilon:49891..51278+

>Ggra7827.t1 ID=Ggra7827.t1|Name=Ggra7827.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1131bp|location=Sequence derived from alignment at tig00000073_pilon:49891..51278+ (Gracilaria gracilis GNS1m male)
ATGGATCGCTCCGACTCCGAAGTCCCCCGGTCCGCAATACCTGGGGAAAG
CAATGCGACAATTCACGTAGATGTCAAACGCTGGGTTGGCTCTGCCGCCT
CAAAAGTTACAAAGCTTCATATCTCTGAGCCCCGGGAAGTGGCTTTCTTC
TCGAGAGCTGCAGATCGGCATATACAGCACGGAAGTAGAGCAGAACTTAA
GAGATACAAAGAACCAACCCCGAATGTCAATCTGGGAGAACAGTTCGAAA
GCTTCGTTCCCAAAGCAGATGAGATCGCGACCGTTGACACTGTCGTGGAA
GCGGTGGAAGACGGCGATTTCAATCTCTACGAAGAAGCAGATGTTGTAAC
CTTTCGTAATAACCTGAACAAAATCGCGGGAACTCCGTACAATCATCGAG
ATGATTGGGAAATGGATTGCGCGATGGTCGGAAACGTTGTATTTCTCGAC
ATAAGAAAGTTAGATGACAATAACAGGAACCCATCAGCGGCCCGTTTCAT
GTACTACGGGTACCGTTTTGAAGCACTCTGTACGGGGAATGAAGATGAAC
CTGTGAACGCGAATTCAGAATTCTGCAGCATTTCTCGCCTGCGTATTGGG
AATCATCGAATCGTGCTGAGCGCAGAAATTGATTGTACCATGGGAGACCC
CAAGAGCGTCGACAATCCGATACGTAGTTATTTGGAGCTCAAGACGATGC
GTGAAGTGCGGAGTGATAGAGATTTAGGCAATATGTACAGACATCGGTTC
CCAAAGTATTGGGTTCAGTCTTACTTGGCTGGCGTACGGTACATATTTCT
AGGCCTTCGGAGCGATGATGGGGAGCTTCTCGGTGTGAAACGCCTCGAGA
CCCACAAACTTCATCGAGAAGCGCGCCAGTATTTTCAAGAAAGGAATTTG
TCTGGGTGCTGGGAACCGTTTGTATGTCTCAATTTCATCGACTTCCTACT
TCACGCCATTCGCCGTGCTTGCGGAAAGCGAAATGGTTCTACACTCCGAT
TAAGTCGAAGTGCAAGGGATGAGTTCCAGAACGGGTACAAAGTAAGATGT
CATAATGGAGCTCTTCAGGGTTTCGTCTGTCTCAAGTGCGGTGTCAGAAT
AGAGATGCGTGCGGAAAAGGACACGATCTGA
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