Ggra7820.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7820.t1
Unique NameGgra7820.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length318
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:21936..22889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703265.1
Preferred nameVPS26B
PFAMsVps26
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01876,ko:K18466
KEGG ReactionR05577
KEGG Pathwayko00970,ko04144,map00970,map04144
KEGG ModuleM00359,M00360
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0002376,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005829,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007267,GO:0008104,GO:0008150,GO:0008565,GO:0009894,GO:0009966,GO:0009987,GO:0010008,GO:0010033,GO:0010506,GO:0010646,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016055,GO:0016192,GO:0016197,GO:0016241,GO:0016482,GO:0016787,GO:0019222,GO:0023051,GO:0023052,GO:0030111,GO:0030139,GO:0030904,GO:0030906,GO:0031090,GO:0031323,GO:0031329,GO:0031410,GO:0031982,GO:0032507,GO:0032991,GO:0033036,GO:0033365,GO:0034067,GO:0034097,GO:0034341,GO:0034613,GO:0042147,GO:0042221,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045053,GO:0045087,GO:0045184,GO:0045185,GO:0045335,GO:0046907,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051235,GO:0051641,GO:0051649,GO:0051651,GO:0051716,GO:0065007,GO:0065008,GO:0070727,GO:0070887,GO:0071310,GO:0071345,GO:0071346,GO:0071702,GO:0071705,GO:0097422,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098852,GO:0098876,GO:0198738,GO:1905114,GO:1990126
Evalue7.15e-128
EggNOG OGsKOG3063@1|root,KOG3063@2759|Eukaryota
EC6.1.1.12
Descriptionretrograde transport, endosome to Golgi
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7820Ggra7820Gracilaria gracilis GNS1m malegenetig00000073_pilon 21936..22889 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7820.t1.stop1Ggra7820.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 21936..21938 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7820.t1.CDS1Ggra7820.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 21936..22889 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7820.t1.exon1Ggra7820.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 21936..22889 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7820.t1.start1Ggra7820.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 22887..22889 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7820.t1Ggra7820.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 21936..22889 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7820.t1 ID=Ggra7820.t1|Name=Ggra7820.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=318bp
MEAALGFIGLGPPCEITVDLDGAANRRHVNQNPTSSTSLSNSKGNTESQV
LLPLFTETETVSGKVTVTLKDGKQMQHRGIKIEFIGTIEMLYDRENSQEF
TSLERLLDDPGTLSGTKDYRFEFTNVEKTYDTYSGINVKLRYFLRVSIMR
SQYSKDETKEVDIAVQHLVDNPTSNQEIRMEVGIEDSLHIEFVYHSSKFH
LTDLVIGRIYFMLVRINIKRMEMEIRKRESAGTGANVYNETETVMKFEVM
DGAPVRGEVIPVRMFLGACRALTPSYRSINNKFSVKYYLNLVLVDETDRR
YFKQSEITIWRKSYQTV*
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spliced messenger RNA

>Ggra7820.t1 ID=Ggra7820.t1|Name=Ggra7820.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=954bp|location=Sequence derived from alignment at tig00000073_pilon:21936..22889- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGCTGCGCTTGGCTTTATTGGACTGGGGCCGCCCTGTGAGATAAC
AGTTGATTTGGATGGAGCGGCTAATCGGCGTCATGTGAATCAGAACCCAA
CATCCTCCACTTCCTTATCAAATTCAAAGGGAAACACCGAAAGCCAAGTT
TTGCTCCCTTTGTTCACCGAAACAGAGACTGTGAGCGGAAAGGTCACCGT
TACGTTGAAAGATGGCAAACAAATGCAACATCGGGGTATAAAGATCGAGT
TCATTGGAACCATTGAAATGCTGTATGATCGAGAGAACTCGCAAGAGTTC
ACTTCCCTTGAACGTTTGCTGGATGATCCGGGGACGCTTTCAGGTACGAA
AGACTATCGCTTCGAGTTTACTAACGTCGAAAAGACTTATGATACGTACT
CTGGTATCAATGTGAAGTTGAGGTATTTTCTGCGAGTCTCTATTATGCGG
TCGCAGTATAGCAAAGACGAGACGAAAGAGGTCGATATAGCGGTACAACA
TCTAGTGGACAATCCCACATCCAACCAGGAGATTCGAATGGAAGTTGGTA
TTGAAGACTCTTTGCACATTGAATTTGTTTATCACAGTAGCAAGTTTCAC
TTGACTGATTTGGTGATTGGAAGAATATATTTCATGTTGGTTAGAATCAA
TATTAAGCGAATGGAAATGGAAATCCGTAAACGAGAAAGTGCAGGAACTG
GCGCGAATGTATACAATGAGACCGAAACTGTGATGAAATTTGAAGTGATG
GACGGAGCGCCTGTCAGAGGAGAAGTGATCCCAGTACGAATGTTTTTGGG
AGCTTGTCGTGCTCTCACGCCATCGTATCGGTCGATCAACAACAAGTTCT
CGGTGAAATATTACCTTAACCTTGTTCTCGTCGATGAGACTGATCGTCGA
TATTTCAAGCAATCAGAGATTACAATATGGCGAAAGTCGTACCAGACCGT
GTGA
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protein sequence of Ggra7820.t1

>Ggra7820.t1 ID=Ggra7820.t1|Name=Ggra7820.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=318bp
MEAALGFIGLGPPCEITVDLDGAANRRHVNQNPTSSTSLSNSKGNTESQV
LLPLFTETETVSGKVTVTLKDGKQMQHRGIKIEFIGTIEMLYDRENSQEF
TSLERLLDDPGTLSGTKDYRFEFTNVEKTYDTYSGINVKLRYFLRVSIMR
SQYSKDETKEVDIAVQHLVDNPTSNQEIRMEVGIEDSLHIEFVYHSSKFH
LTDLVIGRIYFMLVRINIKRMEMEIRKRESAGTGANVYNETETVMKFEVM
DGAPVRGEVIPVRMFLGACRALTPSYRSINNKFSVKYYLNLVLVDETDRR
YFKQSEITIWRKSYQTV*
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mRNA from alignment at tig00000073_pilon:21936..22889-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7820.t1 ID=Ggra7820.t1|Name=Ggra7820.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=954bp|location=Sequence derived from alignment at tig00000073_pilon:21936..22889- (Gracilaria gracilis GNS1m male)
ATGGAGGCTGCGCTTGGCTTTATTGGACTGGGGCCGCCCTGTGAGATAAC
AGTTGATTTGGATGGAGCGGCTAATCGGCGTCATGTGAATCAGAACCCAA
CATCCTCCACTTCCTTATCAAATTCAAAGGGAAACACCGAAAGCCAAGTT
TTGCTCCCTTTGTTCACCGAAACAGAGACTGTGAGCGGAAAGGTCACCGT
TACGTTGAAAGATGGCAAACAAATGCAACATCGGGGTATAAAGATCGAGT
TCATTGGAACCATTGAAATGCTGTATGATCGAGAGAACTCGCAAGAGTTC
ACTTCCCTTGAACGTTTGCTGGATGATCCGGGGACGCTTTCAGGTACGAA
AGACTATCGCTTCGAGTTTACTAACGTCGAAAAGACTTATGATACGTACT
CTGGTATCAATGTGAAGTTGAGGTATTTTCTGCGAGTCTCTATTATGCGG
TCGCAGTATAGCAAAGACGAGACGAAAGAGGTCGATATAGCGGTACAACA
TCTAGTGGACAATCCCACATCCAACCAGGAGATTCGAATGGAAGTTGGTA
TTGAAGACTCTTTGCACATTGAATTTGTTTATCACAGTAGCAAGTTTCAC
TTGACTGATTTGGTGATTGGAAGAATATATTTCATGTTGGTTAGAATCAA
TATTAAGCGAATGGAAATGGAAATCCGTAAACGAGAAAGTGCAGGAACTG
GCGCGAATGTATACAATGAGACCGAAACTGTGATGAAATTTGAAGTGATG
GACGGAGCGCCTGTCAGAGGAGAAGTGATCCCAGTACGAATGTTTTTGGG
AGCTTGTCGTGCTCTCACGCCATCGTATCGGTCGATCAACAACAAGTTCT
CGGTGAAATATTACCTTAACCTTGTTCTCGTCGATGAGACTGATCGTCGA
TATTTCAAGCAATCAGAGATTACAATATGGCGAAAGTCGTACCAGACCGT
GTGA
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Coding sequence (CDS) from alignment at tig00000073_pilon:21936..22889-

>Ggra7820.t1 ID=Ggra7820.t1|Name=Ggra7820.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=954bp|location=Sequence derived from alignment at tig00000073_pilon:21936..22889- (Gracilaria gracilis GNS1m male)
ATGGAGGCTGCGCTTGGCTTTATTGGACTGGGGCCGCCCTGTGAGATAAC
AGTTGATTTGGATGGAGCGGCTAATCGGCGTCATGTGAATCAGAACCCAA
CATCCTCCACTTCCTTATCAAATTCAAAGGGAAACACCGAAAGCCAAGTT
TTGCTCCCTTTGTTCACCGAAACAGAGACTGTGAGCGGAAAGGTCACCGT
TACGTTGAAAGATGGCAAACAAATGCAACATCGGGGTATAAAGATCGAGT
TCATTGGAACCATTGAAATGCTGTATGATCGAGAGAACTCGCAAGAGTTC
ACTTCCCTTGAACGTTTGCTGGATGATCCGGGGACGCTTTCAGGTACGAA
AGACTATCGCTTCGAGTTTACTAACGTCGAAAAGACTTATGATACGTACT
CTGGTATCAATGTGAAGTTGAGGTATTTTCTGCGAGTCTCTATTATGCGG
TCGCAGTATAGCAAAGACGAGACGAAAGAGGTCGATATAGCGGTACAACA
TCTAGTGGACAATCCCACATCCAACCAGGAGATTCGAATGGAAGTTGGTA
TTGAAGACTCTTTGCACATTGAATTTGTTTATCACAGTAGCAAGTTTCAC
TTGACTGATTTGGTGATTGGAAGAATATATTTCATGTTGGTTAGAATCAA
TATTAAGCGAATGGAAATGGAAATCCGTAAACGAGAAAGTGCAGGAACTG
GCGCGAATGTATACAATGAGACCGAAACTGTGATGAAATTTGAAGTGATG
GACGGAGCGCCTGTCAGAGGAGAAGTGATCCCAGTACGAATGTTTTTGGG
AGCTTGTCGTGCTCTCACGCCATCGTATCGGTCGATCAACAACAAGTTCT
CGGTGAAATATTACCTTAACCTTGTTCTCGTCGATGAGACTGATCGTCGA
TATTTCAAGCAATCAGAGATTACAATATGGCGAAAGTCGTACCAGACCGT
GTGA
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