Ggra7777.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7777.t1
Unique NameGgra7777.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length503
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:518837..520345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708025.1
PFAMsERO1
Max annot lvl2759|Eukaryota
KEGG koko:K10950
KEGG Pathwayko04141,ko05110,map04141,map05110
Evalue2.91e-107
EggNOG OGsCOG5061@1|root,KOG2608@2759|Eukaryota
DescriptionEndoplasmic Reticulum
COG categoryOU
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7777Ggra7777Gracilaria gracilis GNS1m malegenetig00000088_pilon 518837..520345 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7777.t1.stop1Ggra7777.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000088_pilon 518837..518839 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7777.t1.CDS1Ggra7777.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000088_pilon 518837..520345 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7777.t1.exon1Ggra7777.t1.exon1Gracilaria gracilis GNS1m maleexontig00000088_pilon 518837..520345 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7777.t1.start1Ggra7777.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000088_pilon 520343..520345 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7777.t1Ggra7777.t1Gracilaria gracilis GNS1m malepolypeptidetig00000088_pilon 518837..520345 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7777.t1 ID=Ggra7777.t1|Name=Ggra7777.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=503bp
MILKYSQLSFTVLGLILISLALGASHFPPKLPETCADARQIDRQSTRHIN
TLLGKLVSNSTYFSVFRVALDNPCPFWRDEDSMCVIRECSVQNCSEDEVP
KAWRDDADAPCTDSESDSELNSVDRSLTGLAAFVQQPMWYTADDDSWVKR
DDESKSVYVDLRRNPEQYTGYAGPSSQRVWQAIYDENCFIFSDKCRSGIC
DPDTCKEERMFYRLISGLHASISMHIARRYLFGNTWGRNVAIYRERLRPY
PERIRNLNVAYAVAMRALAKASRSLSPNTLKYVTGNEDNDNFTKEQLKNL
FQLHLLQPHCQHKVFDESDMFLEQNKYMLPYFRSAFRNISMIMDCVGCEK
CRVWGKLQFLGLGTALRILFEEEAPELERNEVIALLNLLYKLSTSVLTIE
EMEGQIQRDTQLNKLLGMVLGLCIIGLIGILSHKLSSDNKSGGLSDNNEG
NRRRSTHSSESSSSTVQPESLKSEKNASPEMSHTQSQDIRRRRKDHIVEK
SS*
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spliced messenger RNA

>Ggra7777.t1 ID=Ggra7777.t1|Name=Ggra7777.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1509bp|location=Sequence derived from alignment at tig00000088_pilon:518837..520345- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATACTCAAATACAGTCAACTATCATTCACTGTCCTTGGATTGATCCT
CATATCTCTGGCTTTGGGTGCATCCCACTTTCCTCCAAAACTCCCGGAAA
CCTGTGCTGACGCCCGCCAAATAGACCGTCAATCAACCAGACACATCAAC
ACTCTTCTTGGCAAACTCGTCTCCAATTCCACCTACTTCTCTGTCTTCCG
CGTAGCCTTGGATAATCCATGTCCTTTCTGGCGCGATGAAGATTCCATGT
GTGTGATTCGAGAATGTAGTGTCCAGAACTGTTCAGAAGATGAGGTCCCA
AAGGCCTGGCGAGATGATGCCGATGCACCGTGCACAGATAGTGAGAGCGA
CAGCGAGCTCAACAGCGTTGACCGCAGTTTGACAGGTCTTGCAGCCTTCG
TTCAACAGCCTATGTGGTACACAGCCGACGATGATTCATGGGTGAAGCGA
GACGATGAGAGCAAAAGCGTTTACGTCGATTTAAGGCGTAATCCCGAACA
ATACACCGGTTACGCGGGGCCTAGTTCTCAGCGAGTTTGGCAGGCTATAT
ATGATGAGAACTGCTTCATCTTTTCCGACAAATGCCGCTCCGGAATATGT
GATCCAGATACGTGCAAGGAAGAGCGTATGTTTTACAGACTTATATCCGG
GCTCCATGCATCTATAAGTATGCATATAGCAAGACGTTACTTGTTCGGCA
ACACTTGGGGTCGGAACGTTGCGATTTATAGAGAGAGATTGCGTCCCTAT
CCAGAACGAATCAGAAACTTGAATGTTGCTTATGCAGTTGCAATGCGCGC
CCTAGCGAAGGCATCTAGATCTCTATCTCCGAATACTTTGAAGTATGTCA
CAGGAAACGAAGACAACGATAACTTCACCAAAGAACAACTCAAGAACTTG
TTCCAGTTGCATCTACTTCAACCTCACTGTCAGCACAAAGTGTTTGATGA
GTCTGACATGTTTCTGGAACAGAATAAGTATATGCTCCCATACTTTCGCA
GCGCCTTCCGGAACATTAGTATGATCATGGATTGTGTTGGATGTGAGAAA
TGCCGGGTTTGGGGAAAGCTCCAGTTCCTGGGACTTGGGACCGCCCTACG
GATCCTTTTCGAAGAAGAGGCACCAGAACTGGAGAGGAACGAAGTGATCG
CCTTACTTAACTTGCTCTACAAGCTGTCCACGAGTGTCTTGACCATTGAA
GAAATGGAGGGGCAGATACAGCGAGATACGCAATTAAATAAGCTACTCGG
CATGGTACTCGGACTGTGCATCATTGGACTCATCGGCATTCTTTCTCACA
AGTTATCGTCCGACAACAAATCTGGGGGATTATCCGACAACAACGAAGGC
AATCGGAGAAGGTCTACACATTCAAGTGAAAGCTCATCATCTACTGTTCA
ACCCGAGTCGCTCAAATCGGAGAAGAATGCATCACCTGAGATGTCTCACA
CTCAATCTCAGGATATTCGGCGGAGACGAAAAGATCATATCGTAGAAAAA
AGTTCGTAA
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protein sequence of Ggra7777.t1

>Ggra7777.t1 ID=Ggra7777.t1|Name=Ggra7777.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=503bp
MILKYSQLSFTVLGLILISLALGASHFPPKLPETCADARQIDRQSTRHIN
TLLGKLVSNSTYFSVFRVALDNPCPFWRDEDSMCVIRECSVQNCSEDEVP
KAWRDDADAPCTDSESDSELNSVDRSLTGLAAFVQQPMWYTADDDSWVKR
DDESKSVYVDLRRNPEQYTGYAGPSSQRVWQAIYDENCFIFSDKCRSGIC
DPDTCKEERMFYRLISGLHASISMHIARRYLFGNTWGRNVAIYRERLRPY
PERIRNLNVAYAVAMRALAKASRSLSPNTLKYVTGNEDNDNFTKEQLKNL
FQLHLLQPHCQHKVFDESDMFLEQNKYMLPYFRSAFRNISMIMDCVGCEK
CRVWGKLQFLGLGTALRILFEEEAPELERNEVIALLNLLYKLSTSVLTIE
EMEGQIQRDTQLNKLLGMVLGLCIIGLIGILSHKLSSDNKSGGLSDNNEG
NRRRSTHSSESSSSTVQPESLKSEKNASPEMSHTQSQDIRRRRKDHIVEK
SS*
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mRNA from alignment at tig00000088_pilon:518837..520345-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7777.t1 ID=Ggra7777.t1|Name=Ggra7777.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1509bp|location=Sequence derived from alignment at tig00000088_pilon:518837..520345- (Gracilaria gracilis GNS1m male)
ATGATACTCAAATACAGTCAACTATCATTCACTGTCCTTGGATTGATCCT
CATATCTCTGGCTTTGGGTGCATCCCACTTTCCTCCAAAACTCCCGGAAA
CCTGTGCTGACGCCCGCCAAATAGACCGTCAATCAACCAGACACATCAAC
ACTCTTCTTGGCAAACTCGTCTCCAATTCCACCTACTTCTCTGTCTTCCG
CGTAGCCTTGGATAATCCATGTCCTTTCTGGCGCGATGAAGATTCCATGT
GTGTGATTCGAGAATGTAGTGTCCAGAACTGTTCAGAAGATGAGGTCCCA
AAGGCCTGGCGAGATGATGCCGATGCACCGTGCACAGATAGTGAGAGCGA
CAGCGAGCTCAACAGCGTTGACCGCAGTTTGACAGGTCTTGCAGCCTTCG
TTCAACAGCCTATGTGGTACACAGCCGACGATGATTCATGGGTGAAGCGA
GACGATGAGAGCAAAAGCGTTTACGTCGATTTAAGGCGTAATCCCGAACA
ATACACCGGTTACGCGGGGCCTAGTTCTCAGCGAGTTTGGCAGGCTATAT
ATGATGAGAACTGCTTCATCTTTTCCGACAAATGCCGCTCCGGAATATGT
GATCCAGATACGTGCAAGGAAGAGCGTATGTTTTACAGACTTATATCCGG
GCTCCATGCATCTATAAGTATGCATATAGCAAGACGTTACTTGTTCGGCA
ACACTTGGGGTCGGAACGTTGCGATTTATAGAGAGAGATTGCGTCCCTAT
CCAGAACGAATCAGAAACTTGAATGTTGCTTATGCAGTTGCAATGCGCGC
CCTAGCGAAGGCATCTAGATCTCTATCTCCGAATACTTTGAAGTATGTCA
CAGGAAACGAAGACAACGATAACTTCACCAAAGAACAACTCAAGAACTTG
TTCCAGTTGCATCTACTTCAACCTCACTGTCAGCACAAAGTGTTTGATGA
GTCTGACATGTTTCTGGAACAGAATAAGTATATGCTCCCATACTTTCGCA
GCGCCTTCCGGAACATTAGTATGATCATGGATTGTGTTGGATGTGAGAAA
TGCCGGGTTTGGGGAAAGCTCCAGTTCCTGGGACTTGGGACCGCCCTACG
GATCCTTTTCGAAGAAGAGGCACCAGAACTGGAGAGGAACGAAGTGATCG
CCTTACTTAACTTGCTCTACAAGCTGTCCACGAGTGTCTTGACCATTGAA
GAAATGGAGGGGCAGATACAGCGAGATACGCAATTAAATAAGCTACTCGG
CATGGTACTCGGACTGTGCATCATTGGACTCATCGGCATTCTTTCTCACA
AGTTATCGTCCGACAACAAATCTGGGGGATTATCCGACAACAACGAAGGC
AATCGGAGAAGGTCTACACATTCAAGTGAAAGCTCATCATCTACTGTTCA
ACCCGAGTCGCTCAAATCGGAGAAGAATGCATCACCTGAGATGTCTCACA
CTCAATCTCAGGATATTCGGCGGAGACGAAAAGATCATATCGTAGAAAAA
AGTTCGTAA
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Coding sequence (CDS) from alignment at tig00000088_pilon:518837..520345-

>Ggra7777.t1 ID=Ggra7777.t1|Name=Ggra7777.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1509bp|location=Sequence derived from alignment at tig00000088_pilon:518837..520345- (Gracilaria gracilis GNS1m male)
ATGATACTCAAATACAGTCAACTATCATTCACTGTCCTTGGATTGATCCT
CATATCTCTGGCTTTGGGTGCATCCCACTTTCCTCCAAAACTCCCGGAAA
CCTGTGCTGACGCCCGCCAAATAGACCGTCAATCAACCAGACACATCAAC
ACTCTTCTTGGCAAACTCGTCTCCAATTCCACCTACTTCTCTGTCTTCCG
CGTAGCCTTGGATAATCCATGTCCTTTCTGGCGCGATGAAGATTCCATGT
GTGTGATTCGAGAATGTAGTGTCCAGAACTGTTCAGAAGATGAGGTCCCA
AAGGCCTGGCGAGATGATGCCGATGCACCGTGCACAGATAGTGAGAGCGA
CAGCGAGCTCAACAGCGTTGACCGCAGTTTGACAGGTCTTGCAGCCTTCG
TTCAACAGCCTATGTGGTACACAGCCGACGATGATTCATGGGTGAAGCGA
GACGATGAGAGCAAAAGCGTTTACGTCGATTTAAGGCGTAATCCCGAACA
ATACACCGGTTACGCGGGGCCTAGTTCTCAGCGAGTTTGGCAGGCTATAT
ATGATGAGAACTGCTTCATCTTTTCCGACAAATGCCGCTCCGGAATATGT
GATCCAGATACGTGCAAGGAAGAGCGTATGTTTTACAGACTTATATCCGG
GCTCCATGCATCTATAAGTATGCATATAGCAAGACGTTACTTGTTCGGCA
ACACTTGGGGTCGGAACGTTGCGATTTATAGAGAGAGATTGCGTCCCTAT
CCAGAACGAATCAGAAACTTGAATGTTGCTTATGCAGTTGCAATGCGCGC
CCTAGCGAAGGCATCTAGATCTCTATCTCCGAATACTTTGAAGTATGTCA
CAGGAAACGAAGACAACGATAACTTCACCAAAGAACAACTCAAGAACTTG
TTCCAGTTGCATCTACTTCAACCTCACTGTCAGCACAAAGTGTTTGATGA
GTCTGACATGTTTCTGGAACAGAATAAGTATATGCTCCCATACTTTCGCA
GCGCCTTCCGGAACATTAGTATGATCATGGATTGTGTTGGATGTGAGAAA
TGCCGGGTTTGGGGAAAGCTCCAGTTCCTGGGACTTGGGACCGCCCTACG
GATCCTTTTCGAAGAAGAGGCACCAGAACTGGAGAGGAACGAAGTGATCG
CCTTACTTAACTTGCTCTACAAGCTGTCCACGAGTGTCTTGACCATTGAA
GAAATGGAGGGGCAGATACAGCGAGATACGCAATTAAATAAGCTACTCGG
CATGGTACTCGGACTGTGCATCATTGGACTCATCGGCATTCTTTCTCACA
AGTTATCGTCCGACAACAAATCTGGGGGATTATCCGACAACAACGAAGGC
AATCGGAGAAGGTCTACACATTCAAGTGAAAGCTCATCATCTACTGTTCA
ACCCGAGTCGCTCAAATCGGAGAAGAATGCATCACCTGAGATGTCTCACA
CTCAATCTCAGGATATTCGGCGGAGACGAAAAGATCATATCGTAGAAAAA
AGTTCGTAA
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