Ggra7776.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7776.t1
Unique Name	Ggra7776.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	403

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000088_pilon	contig	tig00000088_pilon:517318..518526 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7776	Ggra7776	Gracilaria gracilis GNS1m male	gene	tig00000088_pilon 517318..518526 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7776.t1.start1	Ggra7776.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000088_pilon 517318..517320 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7776.t1.CDS1	Ggra7776.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000088_pilon 517318..518526 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7776.t1.exon1	Ggra7776.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000088_pilon 517318..518526 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7776.t1.stop1	Ggra7776.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000088_pilon 518524..518526 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7776.t1	Ggra7776.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000088_pilon 517318..518526 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000088_pilon:517318..518526+
coding sequence from alignment at tig00000088_pilon:517318..518526+

mRNA sequence

>Ggra7776.t1 ID=Ggra7776.t1|Name=Ggra7776.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=403bp
MAETGVKRIQHAGLISRLLSDISPDQAIRGIMLHGIQKKSASKRTFPHLI
ARSLLSVVLRAASKSEARSAKDSISILLCAPEEHDASALGFSPGQSTSVV
ANILIDMLSSAAQDEPLLLSGPTLSFYSEAGAGAGDTDEFHKATPEHRVA
QAHSHEPLADIRQLNLAVAIHIFADAFRKKGCRKKLLEVARSNMHRILTP
LLSILPSSISQLDSSLLEALFSFYDALFTALAEHERSDIITRLVSSIMQT
IQTSPEDIFIFANGMSNNALKVSMCRLCLIQRFRVADDYSKPLTVRTLAS
KYLTLKPVKGRANKAVPVLLTVLINSWLQALPEEKLTFEFLGEEISRDVR
EIVTNIFLLRKKMVKRYTETLDVDMIAFKMAVFKLTHRILHAERKNGKLF
AD*

spliced messenger RNA

>Ggra7776.t1 ID=Ggra7776.t1|Name=Ggra7776.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1209bp|location=Sequence derived from alignment at tig00000088_pilon:517318..518526+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGAAACAGGAGTGAAACGAATACAACATGCTGGGTTGATTTCTCG
ACTTCTCTCCGATATTTCCCCAGACCAGGCTATTCGGGGGATTATGCTAC
ATGGAATACAAAAGAAATCAGCTTCTAAGCGAACATTTCCACATCTCATA
GCTAGGTCTCTTCTTTCTGTGGTACTACGCGCTGCATCTAAGTCAGAGGC
CAGGTCTGCCAAGGATTCTATTTCAATACTGCTCTGTGCACCTGAGGAGC
ACGATGCATCTGCGCTCGGGTTCTCACCAGGACAGTCTACCTCTGTTGTA
GCAAACATTTTAATCGATATGTTGTCGTCAGCCGCCCAAGACGAGCCGCT
CCTACTTTCAGGTCCTACTCTTTCATTCTACTCAGAAGCAGGTGCCGGTG
CGGGCGATACTGATGAATTCCATAAAGCGACCCCCGAACATCGGGTCGCA
CAAGCCCACTCACATGAACCCCTCGCAGACATACGTCAGCTCAATCTTGC
AGTGGCCATTCACATTTTCGCAGACGCTTTTAGAAAAAAAGGGTGTCGAA
AGAAGCTTCTTGAAGTCGCGAGAAGCAACATGCACAGAATTTTGACTCCA
CTGTTGTCCATTCTACCCTCTTCGATTTCCCAACTGGATTCCTCATTACT
GGAAGCACTGTTTTCTTTCTATGATGCTCTATTTACAGCTCTTGCCGAAC
ACGAACGTTCCGATATTATTACTCGTCTCGTATCTTCTATCATGCAAACC
ATACAGACAAGTCCGGAAGACATCTTCATTTTCGCGAACGGAATGTCAAA
CAATGCACTGAAAGTCTCAATGTGCCGTTTGTGTTTGATCCAGCGTTTCC
GAGTGGCAGATGACTATTCTAAACCCCTGACTGTACGGACTCTCGCTAGC
AAATATCTTACATTGAAACCTGTCAAAGGTCGTGCGAACAAGGCCGTTCC
CGTCCTTCTAACCGTGTTAATCAACTCATGGCTTCAAGCCTTGCCTGAAG
AGAAATTGACGTTTGAATTCCTGGGGGAAGAAATCTCTAGAGATGTACGA
GAGATTGTAACCAATATCTTTTTGCTGAGAAAGAAAATGGTCAAAAGGTA
TACAGAGACTCTCGACGTTGATATGATAGCGTTCAAAATGGCAGTCTTTA
AACTTACTCACAGAATCCTTCACGCAGAACGCAAGAATGGCAAGCTCTTT
GCCGACTAG

protein sequence of Ggra7776.t1

>Ggra7776.t1 ID=Ggra7776.t1|Name=Ggra7776.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=403bp
MAETGVKRIQHAGLISRLLSDISPDQAIRGIMLHGIQKKSASKRTFPHLI
ARSLLSVVLRAASKSEARSAKDSISILLCAPEEHDASALGFSPGQSTSVV
ANILIDMLSSAAQDEPLLLSGPTLSFYSEAGAGAGDTDEFHKATPEHRVA
QAHSHEPLADIRQLNLAVAIHIFADAFRKKGCRKKLLEVARSNMHRILTP
LLSILPSSISQLDSSLLEALFSFYDALFTALAEHERSDIITRLVSSIMQT
IQTSPEDIFIFANGMSNNALKVSMCRLCLIQRFRVADDYSKPLTVRTLAS
KYLTLKPVKGRANKAVPVLLTVLINSWLQALPEEKLTFEFLGEEISRDVR
EIVTNIFLLRKKMVKRYTETLDVDMIAFKMAVFKLTHRILHAERKNGKLF
AD*

mRNA from alignment at tig00000088_pilon:517318..518526+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7776.t1 ID=Ggra7776.t1|Name=Ggra7776.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1209bp|location=Sequence derived from alignment at tig00000088_pilon:517318..518526+ (Gracilaria gracilis GNS1m male)
ATGGCAGAAACAGGAGTGAAACGAATACAACATGCTGGGTTGATTTCTCG
ACTTCTCTCCGATATTTCCCCAGACCAGGCTATTCGGGGGATTATGCTAC
ATGGAATACAAAAGAAATCAGCTTCTAAGCGAACATTTCCACATCTCATA
GCTAGGTCTCTTCTTTCTGTGGTACTACGCGCTGCATCTAAGTCAGAGGC
CAGGTCTGCCAAGGATTCTATTTCAATACTGCTCTGTGCACCTGAGGAGC
ACGATGCATCTGCGCTCGGGTTCTCACCAGGACAGTCTACCTCTGTTGTA
GCAAACATTTTAATCGATATGTTGTCGTCAGCCGCCCAAGACGAGCCGCT
CCTACTTTCAGGTCCTACTCTTTCATTCTACTCAGAAGCAGGTGCCGGTG
CGGGCGATACTGATGAATTCCATAAAGCGACCCCCGAACATCGGGTCGCA
CAAGCCCACTCACATGAACCCCTCGCAGACATACGTCAGCTCAATCTTGC
AGTGGCCATTCACATTTTCGCAGACGCTTTTAGAAAAAAAGGGTGTCGAA
AGAAGCTTCTTGAAGTCGCGAGAAGCAACATGCACAGAATTTTGACTCCA
CTGTTGTCCATTCTACCCTCTTCGATTTCCCAACTGGATTCCTCATTACT
GGAAGCACTGTTTTCTTTCTATGATGCTCTATTTACAGCTCTTGCCGAAC
ACGAACGTTCCGATATTATTACTCGTCTCGTATCTTCTATCATGCAAACC
ATACAGACAAGTCCGGAAGACATCTTCATTTTCGCGAACGGAATGTCAAA
CAATGCACTGAAAGTCTCAATGTGCCGTTTGTGTTTGATCCAGCGTTTCC
GAGTGGCAGATGACTATTCTAAACCCCTGACTGTACGGACTCTCGCTAGC
AAATATCTTACATTGAAACCTGTCAAAGGTCGTGCGAACAAGGCCGTTCC
CGTCCTTCTAACCGTGTTAATCAACTCATGGCTTCAAGCCTTGCCTGAAG
AGAAATTGACGTTTGAATTCCTGGGGGAAGAAATCTCTAGAGATGTACGA
GAGATTGTAACCAATATCTTTTTGCTGAGAAAGAAAATGGTCAAAAGGTA
TACAGAGACTCTCGACGTTGATATGATAGCGTTCAAAATGGCAGTCTTTA
AACTTACTCACAGAATCCTTCACGCAGAACGCAAGAATGGCAAGCTCTTT
GCCGACTAG

Coding sequence (CDS) from alignment at tig00000088_pilon:517318..518526+

>Ggra7776.t1 ID=Ggra7776.t1|Name=Ggra7776.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1209bp|location=Sequence derived from alignment at tig00000088_pilon:517318..518526+ (Gracilaria gracilis GNS1m male)
ATGGCAGAAACAGGAGTGAAACGAATACAACATGCTGGGTTGATTTCTCG
ACTTCTCTCCGATATTTCCCCAGACCAGGCTATTCGGGGGATTATGCTAC
ATGGAATACAAAAGAAATCAGCTTCTAAGCGAACATTTCCACATCTCATA
GCTAGGTCTCTTCTTTCTGTGGTACTACGCGCTGCATCTAAGTCAGAGGC
CAGGTCTGCCAAGGATTCTATTTCAATACTGCTCTGTGCACCTGAGGAGC
ACGATGCATCTGCGCTCGGGTTCTCACCAGGACAGTCTACCTCTGTTGTA
GCAAACATTTTAATCGATATGTTGTCGTCAGCCGCCCAAGACGAGCCGCT
CCTACTTTCAGGTCCTACTCTTTCATTCTACTCAGAAGCAGGTGCCGGTG
CGGGCGATACTGATGAATTCCATAAAGCGACCCCCGAACATCGGGTCGCA
CAAGCCCACTCACATGAACCCCTCGCAGACATACGTCAGCTCAATCTTGC
AGTGGCCATTCACATTTTCGCAGACGCTTTTAGAAAAAAAGGGTGTCGAA
AGAAGCTTCTTGAAGTCGCGAGAAGCAACATGCACAGAATTTTGACTCCA
CTGTTGTCCATTCTACCCTCTTCGATTTCCCAACTGGATTCCTCATTACT
GGAAGCACTGTTTTCTTTCTATGATGCTCTATTTACAGCTCTTGCCGAAC
ACGAACGTTCCGATATTATTACTCGTCTCGTATCTTCTATCATGCAAACC
ATACAGACAAGTCCGGAAGACATCTTCATTTTCGCGAACGGAATGTCAAA
CAATGCACTGAAAGTCTCAATGTGCCGTTTGTGTTTGATCCAGCGTTTCC
GAGTGGCAGATGACTATTCTAAACCCCTGACTGTACGGACTCTCGCTAGC
AAATATCTTACATTGAAACCTGTCAAAGGTCGTGCGAACAAGGCCGTTCC
CGTCCTTCTAACCGTGTTAATCAACTCATGGCTTCAAGCCTTGCCTGAAG
AGAAATTGACGTTTGAATTCCTGGGGGAAGAAATCTCTAGAGATGTACGA
GAGATTGTAACCAATATCTTTTTGCTGAGAAAGAAAATGGTCAAAAGGTA
TACAGAGACTCTCGACGTTGATATGATAGCGTTCAAAATGGCAGTCTTTA
AACTTACTCACAGAATCCTTCACGCAGAACGCAAGAATGGCAAGCTCTTT
GCCGACTAG