Ggra7753.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7753.t1
Unique NameGgra7753.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length257
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:331518..332288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_12087T0
PFAMsAnk,Ank_2,Ank_3,Ank_4,HET,Helo_like_N,NACHT,NACHT_N
Max annot lvl33154|Opisthokonta
KEGG koko:K10380
KEGG Pathwayko04624,ko05205,map04624,map05205
Evalue3.67e-16
EggNOG OGsCOG0515@1|root,COG0666@1|root,KOG0192@2759|Eukaryota,KOG4177@2759|Eukaryota,38BVK@33154|Opisthokonta
Descriptionprotein localization to T-tubule
COG categoryM
BRITEko00000,ko00001,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7753Ggra7753Gracilaria gracilis GNS1m malegenetig00000088_pilon 331518..332288 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7753.t1.stop1Ggra7753.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000088_pilon 331518..331520 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7753.t1.CDS1Ggra7753.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000088_pilon 331518..332288 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7753.t1.exon1Ggra7753.t1.exon1Gracilaria gracilis GNS1m maleexontig00000088_pilon 331518..332288 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7753.t1.start1Ggra7753.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000088_pilon 332286..332288 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7753.t1Ggra7753.t1Gracilaria gracilis GNS1m malepolypeptidetig00000088_pilon 331518..332288 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7753.t1 ID=Ggra7753.t1|Name=Ggra7753.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=257bp
MTRFSTEDADGFALLTATASADVRQVRRLFNKRSPRMRAQLANFADYDGR
RALHVACSDGYAPVVRELLRNGADWTCIDRFGRSCVADAIAAGHTLVLRE
LAGWHAADHAVPHPVDVLAHGLPAVCVERGYCWGRDLLCAVAARNLSAVR
QLVRQYGANVNFANADGRTPLHLAAVNGDVQMALYLLSAGADARRLDRWR
VSPVAEARRCAFDKLADVLRTYASAAESPPPLPPPPPPPPPPSSSPSPPP
SSPSPQ*
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spliced messenger RNA

>Ggra7753.t1 ID=Ggra7753.t1|Name=Ggra7753.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=771bp|location=Sequence derived from alignment at tig00000088_pilon:331518..332288- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCCGCTTCAGCACCGAGGACGCCGACGGCTTTGCGCTGCTAACCGC
CACAGCGTCCGCCGACGTGCGACAGGTTCGCCGCCTGTTCAACAAACGCT
CGCCGCGCATGCGCGCGCAGCTCGCAAACTTCGCCGACTACGACGGCCGC
CGTGCGCTCCACGTCGCCTGCAGCGACGGCTACGCGCCCGTGGTGCGCGA
GCTGCTTCGCAACGGCGCCGATTGGACGTGTATTGACCGCTTCGGCCGTT
CGTGCGTCGCCGACGCCATCGCCGCCGGCCACACGCTCGTGTTGAGAGAG
CTTGCCGGCTGGCATGCTGCCGACCACGCCGTGCCGCATCCCGTCGACGT
GCTCGCACATGGGCTGCCTGCCGTGTGCGTGGAGCGCGGCTACTGCTGGG
GACGCGACCTGCTTTGCGCCGTCGCCGCGCGCAATCTCAGCGCTGTGCGC
CAGCTTGTGAGACAGTATGGCGCTAACGTCAACTTTGCTAACGCCGACGG
CCGCACGCCGCTGCATCTGGCCGCTGTTAACGGCGACGTGCAGATGGCGC
TCTACTTGCTCAGCGCTGGCGCCGATGCGCGCCGCCTGGATAGGTGGCGC
GTGTCGCCCGTGGCCGAGGCGCGGCGCTGCGCCTTCGACAAGTTGGCCGA
CGTGCTGCGTACGTACGCGAGCGCCGCTGAGTCGCCGCCGCCGCTGCCGC
CGCCGCCGCCGCCGCCGCCGCCGCCTTCTTCGTCGCCCTCGCCGCCGCCT
TCATCGCCCTCGCCGCAGTAG
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protein sequence of Ggra7753.t1

>Ggra7753.t1 ID=Ggra7753.t1|Name=Ggra7753.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=257bp
MTRFSTEDADGFALLTATASADVRQVRRLFNKRSPRMRAQLANFADYDGR
RALHVACSDGYAPVVRELLRNGADWTCIDRFGRSCVADAIAAGHTLVLRE
LAGWHAADHAVPHPVDVLAHGLPAVCVERGYCWGRDLLCAVAARNLSAVR
QLVRQYGANVNFANADGRTPLHLAAVNGDVQMALYLLSAGADARRLDRWR
VSPVAEARRCAFDKLADVLRTYASAAESPPPLPPPPPPPPPPSSSPSPPP
SSPSPQ*
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mRNA from alignment at tig00000088_pilon:331518..332288-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7753.t1 ID=Ggra7753.t1|Name=Ggra7753.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=771bp|location=Sequence derived from alignment at tig00000088_pilon:331518..332288- (Gracilaria gracilis GNS1m male)
ATGACCCGCTTCAGCACCGAGGACGCCGACGGCTTTGCGCTGCTAACCGC
CACAGCGTCCGCCGACGTGCGACAGGTTCGCCGCCTGTTCAACAAACGCT
CGCCGCGCATGCGCGCGCAGCTCGCAAACTTCGCCGACTACGACGGCCGC
CGTGCGCTCCACGTCGCCTGCAGCGACGGCTACGCGCCCGTGGTGCGCGA
GCTGCTTCGCAACGGCGCCGATTGGACGTGTATTGACCGCTTCGGCCGTT
CGTGCGTCGCCGACGCCATCGCCGCCGGCCACACGCTCGTGTTGAGAGAG
CTTGCCGGCTGGCATGCTGCCGACCACGCCGTGCCGCATCCCGTCGACGT
GCTCGCACATGGGCTGCCTGCCGTGTGCGTGGAGCGCGGCTACTGCTGGG
GACGCGACCTGCTTTGCGCCGTCGCCGCGCGCAATCTCAGCGCTGTGCGC
CAGCTTGTGAGACAGTATGGCGCTAACGTCAACTTTGCTAACGCCGACGG
CCGCACGCCGCTGCATCTGGCCGCTGTTAACGGCGACGTGCAGATGGCGC
TCTACTTGCTCAGCGCTGGCGCCGATGCGCGCCGCCTGGATAGGTGGCGC
GTGTCGCCCGTGGCCGAGGCGCGGCGCTGCGCCTTCGACAAGTTGGCCGA
CGTGCTGCGTACGTACGCGAGCGCCGCTGAGTCGCCGCCGCCGCTGCCGC
CGCCGCCGCCGCCGCCGCCGCCGCCTTCTTCGTCGCCCTCGCCGCCGCCT
TCATCGCCCTCGCCGCAGTAG
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Coding sequence (CDS) from alignment at tig00000088_pilon:331518..332288-

>Ggra7753.t1 ID=Ggra7753.t1|Name=Ggra7753.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=771bp|location=Sequence derived from alignment at tig00000088_pilon:331518..332288- (Gracilaria gracilis GNS1m male)
ATGACCCGCTTCAGCACCGAGGACGCCGACGGCTTTGCGCTGCTAACCGC
CACAGCGTCCGCCGACGTGCGACAGGTTCGCCGCCTGTTCAACAAACGCT
CGCCGCGCATGCGCGCGCAGCTCGCAAACTTCGCCGACTACGACGGCCGC
CGTGCGCTCCACGTCGCCTGCAGCGACGGCTACGCGCCCGTGGTGCGCGA
GCTGCTTCGCAACGGCGCCGATTGGACGTGTATTGACCGCTTCGGCCGTT
CGTGCGTCGCCGACGCCATCGCCGCCGGCCACACGCTCGTGTTGAGAGAG
CTTGCCGGCTGGCATGCTGCCGACCACGCCGTGCCGCATCCCGTCGACGT
GCTCGCACATGGGCTGCCTGCCGTGTGCGTGGAGCGCGGCTACTGCTGGG
GACGCGACCTGCTTTGCGCCGTCGCCGCGCGCAATCTCAGCGCTGTGCGC
CAGCTTGTGAGACAGTATGGCGCTAACGTCAACTTTGCTAACGCCGACGG
CCGCACGCCGCTGCATCTGGCCGCTGTTAACGGCGACGTGCAGATGGCGC
TCTACTTGCTCAGCGCTGGCGCCGATGCGCGCCGCCTGGATAGGTGGCGC
GTGTCGCCCGTGGCCGAGGCGCGGCGCTGCGCCTTCGACAAGTTGGCCGA
CGTGCTGCGTACGTACGCGAGCGCCGCTGAGTCGCCGCCGCCGCTGCCGC
CGCCGCCGCCGCCGCCGCCGCCGCCTTCTTCGTCGCCCTCGCCGCCGCCT
TCATCGCCCTCGCCGCAGTAG
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