Ggra7749.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7749.t1
Unique NameGgra7749.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length306
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:327458..328375 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704184.1
Max annot lvl2759|Eukaryota
KEGG koko:K17306
Evalue4.6e-37
EggNOG OGs2E9QI@1|root,2SG1G@2759|Eukaryota
BRITEko00000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7749Ggra7749Gracilaria gracilis GNS1m malegenetig00000088_pilon 327458..328375 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7749.t1.stop1Ggra7749.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000088_pilon 327458..327460 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7749.t1.CDS1Ggra7749.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000088_pilon 327458..328375 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7749.t1.exon1Ggra7749.t1.exon1Gracilaria gracilis GNS1m maleexontig00000088_pilon 327458..328375 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7749.t1.start1Ggra7749.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000088_pilon 328373..328375 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7749.t1Ggra7749.t1Gracilaria gracilis GNS1m malepolypeptidetig00000088_pilon 327458..328375 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7749.t1 ID=Ggra7749.t1|Name=Ggra7749.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=306bp
MSVADAASVRTVAVQLRALSADPDNQPIIAREEGCLRALISFVEAQDIAV
ATIAVAALKNLASHPDNFQLLRSEHDLLDALKTLLLADHADRQLRQTVFD
VLEELVDDNDDDEMDELDDLEHNAGLRQKPAPEPGLLEHPCTVRLHVPGI
SDDVFCVRVEQLVIRKRGVISIAFELGAEVAVIYTKTPADELMSYVSTMT
GVSVQQLPDPPEHDEDDCDDEHGTNDTASERDHDAAQPAYLDQSGQRLRD
VAKKNAKKKNNIAQGASSLHERLRAQREEESRKKARANRLLDSIGRGMTS
GWGLW*
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spliced messenger RNA

>Ggra7749.t1 ID=Ggra7749.t1|Name=Ggra7749.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=918bp|location=Sequence derived from alignment at tig00000088_pilon:327458..328375- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGTAGCCGACGCCGCCAGCGTGCGAACCGTCGCCGTCCAGCTACG
CGCCCTGTCGGCAGACCCCGACAACCAGCCCATCATCGCGCGTGAGGAAG
GCTGTCTCCGCGCCCTCATCTCCTTCGTCGAGGCGCAGGACATTGCCGTC
GCCACCATCGCCGTCGCAGCCCTCAAGAACCTCGCCTCGCACCCCGACAA
TTTCCAGCTGCTGCGCTCGGAACACGACCTCCTGGACGCCCTCAAGACCC
TCTTGCTGGCCGACCATGCCGACAGGCAGCTCAGACAGACCGTCTTCGAC
GTGCTGGAGGAGCTGGTCGATGACAATGACGACGATGAGATGGATGAACT
CGATGACCTGGAGCATAACGCTGGCCTCCGCCAAAAACCTGCGCCGGAGC
CTGGCCTGCTGGAACACCCCTGTACCGTCAGACTGCACGTGCCGGGCATT
TCTGACGACGTGTTCTGCGTACGCGTCGAGCAACTCGTCATTCGTAAACG
CGGCGTAATTTCAATCGCATTCGAGCTGGGCGCGGAGGTGGCCGTCATCT
ACACCAAAACGCCCGCGGACGAGCTCATGTCCTACGTGTCTACTATGACG
GGCGTCAGCGTGCAGCAGTTGCCAGACCCCCCCGAGCACGATGAGGACGA
CTGCGATGATGAACATGGCACCAATGATACCGCGTCGGAGAGGGACCATG
ATGCCGCGCAACCCGCTTATCTGGATCAATCTGGGCAACGACTGCGCGAT
GTTGCTAAGAAGAATGCCAAGAAGAAAAATAACATCGCCCAGGGCGCTAG
TTCGCTGCACGAGCGCTTGCGCGCGCAGCGCGAGGAGGAGAGTCGCAAGA
AGGCGCGCGCAAATCGATTGTTGGATAGCATTGGTAGAGGTATGACTTCT
GGCTGGGGACTGTGGTAA
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protein sequence of Ggra7749.t1

>Ggra7749.t1 ID=Ggra7749.t1|Name=Ggra7749.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=306bp
MSVADAASVRTVAVQLRALSADPDNQPIIAREEGCLRALISFVEAQDIAV
ATIAVAALKNLASHPDNFQLLRSEHDLLDALKTLLLADHADRQLRQTVFD
VLEELVDDNDDDEMDELDDLEHNAGLRQKPAPEPGLLEHPCTVRLHVPGI
SDDVFCVRVEQLVIRKRGVISIAFELGAEVAVIYTKTPADELMSYVSTMT
GVSVQQLPDPPEHDEDDCDDEHGTNDTASERDHDAAQPAYLDQSGQRLRD
VAKKNAKKKNNIAQGASSLHERLRAQREEESRKKARANRLLDSIGRGMTS
GWGLW*
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mRNA from alignment at tig00000088_pilon:327458..328375-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7749.t1 ID=Ggra7749.t1|Name=Ggra7749.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=918bp|location=Sequence derived from alignment at tig00000088_pilon:327458..328375- (Gracilaria gracilis GNS1m male)
ATGAGCGTAGCCGACGCCGCCAGCGTGCGAACCGTCGCCGTCCAGCTACG
CGCCCTGTCGGCAGACCCCGACAACCAGCCCATCATCGCGCGTGAGGAAG
GCTGTCTCCGCGCCCTCATCTCCTTCGTCGAGGCGCAGGACATTGCCGTC
GCCACCATCGCCGTCGCAGCCCTCAAGAACCTCGCCTCGCACCCCGACAA
TTTCCAGCTGCTGCGCTCGGAACACGACCTCCTGGACGCCCTCAAGACCC
TCTTGCTGGCCGACCATGCCGACAGGCAGCTCAGACAGACCGTCTTCGAC
GTGCTGGAGGAGCTGGTCGATGACAATGACGACGATGAGATGGATGAACT
CGATGACCTGGAGCATAACGCTGGCCTCCGCCAAAAACCTGCGCCGGAGC
CTGGCCTGCTGGAACACCCCTGTACCGTCAGACTGCACGTGCCGGGCATT
TCTGACGACGTGTTCTGCGTACGCGTCGAGCAACTCGTCATTCGTAAACG
CGGCGTAATTTCAATCGCATTCGAGCTGGGCGCGGAGGTGGCCGTCATCT
ACACCAAAACGCCCGCGGACGAGCTCATGTCCTACGTGTCTACTATGACG
GGCGTCAGCGTGCAGCAGTTGCCAGACCCCCCCGAGCACGATGAGGACGA
CTGCGATGATGAACATGGCACCAATGATACCGCGTCGGAGAGGGACCATG
ATGCCGCGCAACCCGCTTATCTGGATCAATCTGGGCAACGACTGCGCGAT
GTTGCTAAGAAGAATGCCAAGAAGAAAAATAACATCGCCCAGGGCGCTAG
TTCGCTGCACGAGCGCTTGCGCGCGCAGCGCGAGGAGGAGAGTCGCAAGA
AGGCGCGCGCAAATCGATTGTTGGATAGCATTGGTAGAGGTATGACTTCT
GGCTGGGGACTGTGGTAA
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Coding sequence (CDS) from alignment at tig00000088_pilon:327458..328375-

>Ggra7749.t1 ID=Ggra7749.t1|Name=Ggra7749.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=918bp|location=Sequence derived from alignment at tig00000088_pilon:327458..328375- (Gracilaria gracilis GNS1m male)
ATGAGCGTAGCCGACGCCGCCAGCGTGCGAACCGTCGCCGTCCAGCTACG
CGCCCTGTCGGCAGACCCCGACAACCAGCCCATCATCGCGCGTGAGGAAG
GCTGTCTCCGCGCCCTCATCTCCTTCGTCGAGGCGCAGGACATTGCCGTC
GCCACCATCGCCGTCGCAGCCCTCAAGAACCTCGCCTCGCACCCCGACAA
TTTCCAGCTGCTGCGCTCGGAACACGACCTCCTGGACGCCCTCAAGACCC
TCTTGCTGGCCGACCATGCCGACAGGCAGCTCAGACAGACCGTCTTCGAC
GTGCTGGAGGAGCTGGTCGATGACAATGACGACGATGAGATGGATGAACT
CGATGACCTGGAGCATAACGCTGGCCTCCGCCAAAAACCTGCGCCGGAGC
CTGGCCTGCTGGAACACCCCTGTACCGTCAGACTGCACGTGCCGGGCATT
TCTGACGACGTGTTCTGCGTACGCGTCGAGCAACTCGTCATTCGTAAACG
CGGCGTAATTTCAATCGCATTCGAGCTGGGCGCGGAGGTGGCCGTCATCT
ACACCAAAACGCCCGCGGACGAGCTCATGTCCTACGTGTCTACTATGACG
GGCGTCAGCGTGCAGCAGTTGCCAGACCCCCCCGAGCACGATGAGGACGA
CTGCGATGATGAACATGGCACCAATGATACCGCGTCGGAGAGGGACCATG
ATGCCGCGCAACCCGCTTATCTGGATCAATCTGGGCAACGACTGCGCGAT
GTTGCTAAGAAGAATGCCAAGAAGAAAAATAACATCGCCCAGGGCGCTAG
TTCGCTGCACGAGCGCTTGCGCGCGCAGCGCGAGGAGGAGAGTCGCAAGA
AGGCGCGCGCAAATCGATTGTTGGATAGCATTGGTAGAGGTATGACTTCT
GGCTGGGGACTGTGGTAA
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